Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8289033.1

Orthogroup ID

OG0010322

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 716

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8289033.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 715 bp

atggactcctcatccccaatccctctccagcagacccctctcgcctccccaaaaccctccaagaaaagcttcgtcacctctctcatggaggtcgccaccctccgaaccccttccttcaaggaagacacctacttggtctccggtctcaagtcctcggagaagaaggcgctccaggagctcaaggacaagctcattgcctccgactcctgcgacggcgccatgtggggcgtcaaattgctcgccggagacgacaaggccgacgtcatcctcctcaagtttctccgggcgcgggatttccgggtcgctgacgctttcagcatgatagtcaagtgtctggagtggaggaaggagttcggagcggacggggttgctgaggaggacctgggatttaaggagctcgaaggcgttgttgcttacatgcacggatttgataggtgcggacaccctgtgtgttataatgcctatggagtcttcaaggacaaggacatgtacgagaggattttcggggacgaggagaagctcaagaagtttttgaggtggagagttcaggtccttgaaaagggtatcaacgtcttgcattttaagccgggagggatcaactccatcatccaagtcactgatctcaaggacatgcccaaaagggagctcagggttgcttcaaatcagatcctttcgctgtttcaggacaactacccagaaatggtggccagaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

238

Amino Acids

26.94

Weight (kDa)

8.22

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51670
fragaria_vesca	FvH4_6g10580
malus_domestica	MD04G1167000.v1.1 MD12G1180600.v1.1
prunus_persica	Prupe.6G285300_v2.0.a1 Prupe.6G285300_v2.0.a1
pyrus_communis	pycom04g14840 pycom12g17020
rosa_chinensis	RchiOBHm_Chr3g0461561
rosa_laevigata	RLG00000014119 RLG00000024918
rosa_multiflora	Rmu_co8289033.1_g000001 Rmu_ssc0000193.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418140 Rroxscaffold_6G00418510
rosa_rugosa	Rorug03G0051900 Rorug06G0023600
rosa_samantha	Rh3AG110000 Rh3BG113300 Rh3DG114900
rosa_wichuraiana	Rw3G009300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AatII	GACGTC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	359
AccII	CGCG	1 cut(s)	289
AciI	CCGC	3 cut(s)	289, 359, 438
AclWI	GGATC	2 cut(s)	602, 661
AcoI	YGGCCR	1 cut(s)	705
AcyI	GRCGYC	3 cut(s)	216, 228, 261
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	289, 559, 700
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	4 cut(s)	118, 475, 557, 660
AjnI	CCWGG	2 cut(s)	171, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	69, 178, 190, 397, 520, 646
AluI	AGCT	6 cut(s)	69, 178, 190, 397, 520, 646
Alw21I	GWGCWC	3 cut(s)	180, 399, 648
Alw26I	GTCTC	3 cut(s)	142, 149, 240
AlwI	GGATC	2 cut(s)	602, 661
AoxI	GGCC	2 cut(s)	255, 705
Asp700I	GAANNNNTTC	3 cut(s)	68, 109, 350
AspLEI	GCGC	3 cut(s)	169, 218, 289
AspS9I	GGNCC	2 cut(s)	379, 550
AsuC2I	CCSGG	3 cut(s)	284, 299, 588
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	379, 550
BalI	TGGCCA	1 cut(s)	707
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	3 cut(s)	180, 399, 648
BbsI	GAAGAC	2 cut(s)	129, 463
Bbv12I	GWGCWC	3 cut(s)	180, 399, 648
BbvCI	CCTCAGC	1 cut(s)	372
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	173, 383
BcnI	CCSGG	3 cut(s)	284, 299, 588
BcoDI	GTCTC	3 cut(s)	142, 149, 240
BfoI	RGCGCY	2 cut(s)	170, 219
Bme1390I	CCNGG	5 cut(s)	173, 284, 299, 383, 588
Bme18I	GGWCC	2 cut(s)	379, 550
BmgT120I	GGNCC	2 cut(s)	379, 550
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	5 cut(s)	173, 284, 299, 383, 588
BpiI	GAAGAC	2 cut(s)	129, 463
BpmI	CTGGAG	3 cut(s)	11, 155, 356
Bpu10I	CCTNAGC	2 cut(s)	372, 647
BpuEI	CTTGAG	5 cut(s)	131, 164, 257, 506, 608
BpuMI	CCSGG	3 cut(s)	284, 299, 588
BsaHI	GRCGYC	3 cut(s)	216, 228, 261
BsaI	GGTCTC	2 cut(s)	142, 149
BsaJI	CCNNGG	2 cut(s)	153, 382
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 559, 700
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	173, 383
BseDI	CCNNGG	2 cut(s)	153, 382
BseGI	GGATG	3 cut(s)	11, 264, 606
BseLI	CCNNNNNNNGG	3 cut(s)	289, 559, 700
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	363, 661
BseRI	GAGGAG	3 cut(s)	260, 389, 527
Bsh1236I	CGCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	257, 707
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	3 cut(s)	180, 399, 648
BsiSI	CCGG	5 cut(s)	141, 243, 283, 298, 587
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	3 cut(s)	289, 559, 700
BsmAI	GTCTC	3 cut(s)	142, 149, 240
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	257, 707
Bso31I	GGTCTC	2 cut(s)	142, 149
Bsp1286I	GDGCHC	3 cut(s)	180, 399, 648
Bsp143I	GATC	3 cut(s)	594, 619, 666
BspACI	CCGC	3 cut(s)	289, 359, 438
BspANI	GGCC	2 cut(s)	257, 707
BspCNI	CTCAG	2 cut(s)	364, 660
BspFNI	CGCG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	602, 661
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	2 cut(s)	142, 149
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	153, 382
BssMI	GATC	3 cut(s)	594, 619, 666
BssNI	GRCGYC	3 cut(s)	216, 228, 261
Bst2UI	CCWGG	2 cut(s)	173, 383
BstACI	GRCGYC	3 cut(s)	216, 228, 261
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	372, 647
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	11, 264, 606
BstFNI	CGCG	1 cut(s)	289
BstH2I	RGCGCY	2 cut(s)	170, 219
BstHHI	GCGC	3 cut(s)	169, 218, 289
BstKTI	GATC	3 cut(s)	597, 622, 669
BstMAI	GTCTC	3 cut(s)	142, 149, 240
BstMBI	GATC	3 cut(s)	594, 619, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 583
BstNI	CCWGG	2 cut(s)	173, 383
BstNSI	RCATGY	3 cut(s)	421, 490, 634
BstSCI	CCNGG	5 cut(s)	171, 282, 297, 381, 586
BstUI	CGCG	1 cut(s)	289
BstV2I	GAAGAC	2 cut(s)	129, 463
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	257, 707
BtsCI	GGATG	3 cut(s)	11, 264, 606
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	3 cut(s)	169, 218, 289
Cfr13I	GGNCC	2 cut(s)	379, 550
CseI	GACGC	2 cut(s)	217, 317
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	6 cut(s)	85, 220, 319, 418, 487, 631
CviJI	RGCY	9 cut(s)	69, 178, 190, 257, 397, 520, 586, 646, 707
CviKI_1	RGCY	9 cut(s)	69, 178, 190, 257, 397, 520, 586, 646, 707
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	2 cut(s)	372, 647
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	3 cut(s)	596, 621, 668
DpnII	GATC	3 cut(s)	594, 619, 666
DraIII	CACNNNGTG	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	705
Ecl136II	GAGCTC	3 cut(s)	178, 397, 646
Eco24I	GRGCYC	3 cut(s)	180, 399, 648
Eco31I	GGTCTC	2 cut(s)	142, 149
Eco47I	GGWCC	2 cut(s)	379, 550
Eco53kI	GAGCTC	3 cut(s)	178, 397, 646
EcoICRI	GAGCTC	3 cut(s)	178, 397, 646
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	379, 550
EcoRII	CCWGG	2 cut(s)	171, 381
EcoT38I	GRGCYC	3 cut(s)	180, 399, 648
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	6 cut(s)	88, 223, 322, 421, 490, 634
FaiI	YATR	8 cut(s)	86, 221, 320, 419, 456, 465, 488, 632
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	6 cut(s)	84, 219, 318, 417, 486, 630
FauI	CCCGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	251, 593
FriOI	GRGCYC	3 cut(s)	180, 399, 648
GlaI	GCGC	3 cut(s)	168, 217, 288
GsuI	CTGGAG	3 cut(s)	11, 155, 356
HaeII	RGCGCY	2 cut(s)	170, 219
HaeIII	GGCC	2 cut(s)	257, 707
HapII	CCGG	5 cut(s)	141, 243, 283, 298, 587
HgaI	GACGC	2 cut(s)	217, 317
HhaI	GCGC	3 cut(s)	169, 218, 289
Hin1I	GRCGYC	3 cut(s)	216, 228, 261
Hin1II	CATG	6 cut(s)	88, 223, 322, 421, 490, 634
Hin6I	GCGC	3 cut(s)	167, 216, 287
HinP1I	GCGC	3 cut(s)	167, 216, 287
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	3 cut(s)	5, 203, 468
HpaII	CCGG	5 cut(s)	141, 243, 283, 298, 587
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	5 cut(s)	104, 157, 202, 356, 666
Hpy188III	TCNNGA	3 cut(s)	335, 523, 683
Hpy99I	CGWCG	2 cut(s)	215, 263
HpyAV	CCTTC	5 cut(s)	120, 124, 157, 340, 395
HpyCH4IV	ACGT	2 cut(s)	261, 570
HpyCH4V	TGCA	2 cut(s)	421, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 583
HpyF3I	CTNAG	2 cut(s)	372, 647
HpySE526I	ACGT	2 cut(s)	261, 570
Hsp92I	GRCGYC	3 cut(s)	216, 228, 261
Hsp92II	CATG	6 cut(s)	88, 223, 322, 421, 490, 634
HspAI	GCGC	3 cut(s)	167, 216, 287
KasI	GGCGCC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	594, 619, 666
LmnI	GCTCC	5 cut(s)	174, 175, 356, 394, 643
MaeII	ACGT	2 cut(s)	261, 570
MaeIII	GTNAC	2 cut(s)	73, 613
MalI	GATC	3 cut(s)	596, 621, 668
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	3 cut(s)	594, 619, 666
MboII	GAAGA	3 cut(s)	134, 172, 463
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	3 cut(s)	180, 399, 648
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	1 cut(s)	233
MluNI	TGGCCA	1 cut(s)	707
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	197, 477
MmeI	TCCRAC	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	707
MroXI	GAANNNNTTC	3 cut(s)	68, 109, 350
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	2 cut(s)	390, 582
Msp20I	TGGCCA	1 cut(s)	707
MspI	CCGG	5 cut(s)	141, 243, 283, 298, 587
MspR9I	CCNGG	5 cut(s)	173, 284, 299, 383, 588
MvaI	CCWGG	2 cut(s)	173, 383
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	175, 583
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	3 cut(s)	284, 299, 588
NdeII	GATC	3 cut(s)	594, 619, 666
NlaIII	CATG	6 cut(s)	88, 223, 322, 421, 490, 634
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	73, 613
NspI	RCATGY	3 cut(s)	421, 490, 634
PciI	ACATGT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PdmI	GAANNNNTTC	3 cut(s)	68, 109, 350
PfoI	TCCNGGA	1 cut(s)	171
PleI	GAGTC	2 cut(s)	197, 476
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	2 cut(s)	197, 476
PpuMI	RGGWCCY	2 cut(s)	379, 550
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	456
Psp124BI	GAGCTC	3 cut(s)	180, 399, 648
Psp5II	RGGWCCY	2 cut(s)	379, 550
Psp6I	CCWGG	2 cut(s)	171, 381
PspGI	CCWGG	2 cut(s)	171, 381
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	379, 550
PspPPI	RGGWCCY	2 cut(s)	379, 550
PsuI	RGATCY	1 cut(s)	666
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SacI	GAGCTC	3 cut(s)	180, 399, 648
SaqAI	TTAA	2 cut(s)	390, 582
Sau3AI	GATC	3 cut(s)	594, 619, 666
Sau96I	GGNCC	2 cut(s)	379, 550
SchI	GAGTC	2 cut(s)	197, 477
ScrFI	CCNGG	5 cut(s)	173, 284, 299, 383, 588
SduI	GDGCHC	3 cut(s)	180, 399, 648
SfoI	GGCGCC	1 cut(s)	217
SinI	GGWCC	2 cut(s)	379, 550
SmlI	CTYRAG	5 cut(s)	146, 179, 272, 521, 623
SmoI	CTYRAG	5 cut(s)	146, 179, 272, 521, 623
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	289, 359, 438
SspDI	GGCGCC	1 cut(s)	215
SstI	GAGCTC	3 cut(s)	180, 399, 648
StyD4I	CCNGG	5 cut(s)	171, 282, 297, 381, 586
TaiI	ACGT	2 cut(s)	264, 573
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	390, 582
Tru9I	TTAA	2 cut(s)	390, 582
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	2 cut(s)	73, 613
Tsp45I	GTSAC	2 cut(s)	73, 613
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	622
VpaK11BI	GGWCC	2 cut(s)	379, 550
XagI	CCTNNNNNAGG	1 cut(s)	557
XceI	RCATGY	3 cut(s)	421, 490, 634
XmnI	GAANNNNTTC	3 cut(s)	68, 109, 350
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.