MD12G1180600.v1.1

CRAL/TRIO, N-terminal domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
26054346 .. 26056717
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1180600.v1.1.491

Sequence Viewer

Length: 1227 bp
ATGGACCAGAAAACTCCTCTGCAAGCCCTACCGGAAGCCTCCCCAAAACCCAGCAAGAAAAGCTTCGTCACGTCCCTAATGTCCCCCCGCACCCCCTCCTTCCATGAAGACACCTACTTCGTCTCCAACCTCAAATCCTCCGAAAAGAAATCCCTCCAAGAACTCAAAGACAAGCTCGCCGTCTCGGACTCCTCCTCCGCCGCCATGTGGGGCATTCCCCTTCTGGGAAACGACGAAAAGGCCGACGTCGTCCTCCTTAAGTTCCTCCGCGCCAGGGACTTCCGCGTCCCCGACACTTTCACCATGCTTACCAAATGCCTGGCGTGGCGGAAGGAGTTCGGCGCCGACGGCGTCGTGGAGGAGGACTTGGGGTTCAAGGAGCTGGAGGGGGTGGTGGCGTACATGCACGGATTCGACAAACAGGGGCACCCTGTTTGCTACAACGCCTATGGAGTTTTTAAAGATAAGGAAATGTATGAGAGGATTTTCGGGGACGATGAGAAGCTGAAGAAGTTTCTGAGGTGGAGAGTGCAGGTTCTTGAGAGGGGGATCAATGCCCTGCACTTTAAGCCAGGCGGGATCAACTCGCTAATTCAGGTGACTGATCTGAAGGACATGCCTAAAAGGGAGCTCAGGGTTGCTTCCAACCAGATCCTCTCTCTGTTTCAGGACAACTATCCTGAAATGGTTGCAAGAAAGATTTTCATCAATGTGCCGTGGTACTTCAGTGTTTTGTATTCTATGTTCAGCCCATTTCTGACTCAGAGGACAAAGAGCAAGTTTGTGATAGCCAAGGAAGGAAATGTTGCAGAAACACTATACAAGTTCATAAGGCCCGAGGATGTTCCGGTTCAGTACGGAGGCCTGAGTCGACCGAGTGATGCACAAAACGGCCCCCCTAAACCAGCTTCCGAGTTCACTGTCAAAGGAGGAGAGAAAGTGAACATACAGATTGAGGGGATTGAGGCTGATGCAACAATCACATGGGACATAGTAGTGGGAGGGTGGGACTTGGAGTACACTGCAGAGTTCGTGCCTAGTGCAGAAGGCAGCTACACTATCCAAGTGGAGAAGCCAAGAAAAGTGATGCCCTCTGAAGAAGCAATCCACAGCTCCTTTACTCCCAGTGAAGCAGGAAAGATGGTTTTCTCAGTTGACAACTCTGGCTCCCGCCGGAAAAAAGTAGCTGCCTATCGCTACATTGTCTGCAAATCTGCTCCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

46.01

Weight (kDa)

8.45

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 52 - 105 1.6e-11 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 129 - 288 1.8e-33 CRAL/TRIO domain
GOLD_PATL1_C PF25099 309 - 393 2e-29 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 523
AccB1I GGYRCC 2 cut(s) 341, 426
AccI GTMKAC 1 cut(s) 871
AccII CGCG 2 cut(s) 270, 285
AciI CCGC 8 cut(s) 88, 198, 201, 268, 283, 328, 576, 1171
AclWI GGATC 3 cut(s) 557, 587, 646
AcuI CTGAAG 4 cut(s) 527, 629, 709, 1116
AcyI GRCGYC 3 cut(s) 246, 342, 351
AfaI GTAC 4 cut(s) 401, 722, 857, 1019
AfiI CCNNNNNNNGG 3 cut(s) 207, 224, 274
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 376
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 3 cut(s) 272, 318, 571
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 9 cut(s) 63, 175, 382, 505, 631, 908, 1053, 1113, 1187
AluI AGCT 9 cut(s) 63, 175, 382, 505, 631, 908, 1053, 1113, 1187
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 2 cut(s) 127, 187
AlwI GGATC 3 cut(s) 557, 587, 646
Ama87I CYCGRG 1 cut(s) 836
AoxI GGCC 4 cut(s) 240, 833, 862, 892
ApeKI GCWGC 2 cut(s) 1050, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 2 cut(s) 62, 335
AspLEI GCGC 2 cut(s) 272, 344
AspS9I GGNCC 3 cut(s) 4, 834, 893
AsuHPI GGTGA 2 cut(s) 292, 610
AvaI CYCGRG 1 cut(s) 836
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 429
BaeI ACNNNNGTAYC 2 cut(s) 712, 745
BanI GGYRCC 2 cut(s) 341, 426
BanII GRGCYC 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 1062, 1174
BccI CCATC 1 cut(s) 1135
BceAI ACGGC 4 cut(s) 164, 364, 700, 907
BciT130I CCWGG 3 cut(s) 274, 320, 573
BcoDI GTCTC 2 cut(s) 127, 187
BfaI CTAG 1 cut(s) 1038
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 523
BisI GCNGC 3 cut(s) 201, 1051, 1188
BlsI GCNGC 3 cut(s) 202, 1052, 1189
Bme1390I CCNGG 3 cut(s) 274, 320, 573
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 836
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 4, 834, 893
BmiI GGNNCC 4 cut(s) 343, 428, 895, 1168
BmrFI CCNGG 3 cut(s) 274, 320, 573
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 3 cut(s) 871, 961, 1077
BmuI ACTGGG 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 704
BsaHI GRCGYC 3 cut(s) 246, 342, 351
BsaJI CCNNGG 4 cut(s) 273, 716, 792, 837
BsaWI WCCGGW 2 cut(s) 31, 847
BsaXI ACNNNNNCTCC 8 cut(s) 107, 137, 179, 209, 924, 954, 1151, 1181
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 224, 274
Bse1I ACTGG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 704
BseBI CCWGG 3 cut(s) 274, 320, 573
BseDI CCNNGG 4 cut(s) 273, 716, 792, 837
BseGI GGATG 1 cut(s) 847
BseJI GATNNNNATC 1 cut(s) 704
BseLI CCNNNNNNNGG 3 cut(s) 207, 224, 274
BseMII CTCAG 5 cut(s) 509, 646, 776, 857, 1164
BseNI ACTGG 1 cut(s) 1125
BseRI GAGGAG 5 cut(s) 6, 181, 184, 374, 945
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 2 cut(s) 1062, 1174
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 3 cut(s) 545, 551, 1062
Bsh1236I CGCG 2 cut(s) 270, 285
Bsh1285I CGRYCG 1 cut(s) 875
BshFI GGCC 4 cut(s) 242, 835, 864, 894
BshNI GGYRCC 2 cut(s) 341, 426
BsiEI CGRYCG 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 836
BsiSI CCGG 3 cut(s) 32, 848, 1174
BslFI GGGAC 7 cut(s) 58, 67, 272, 290, 506, 1001, 1022
BslI CCNNNNNNNGG 3 cut(s) 207, 224, 274
BsmAI GTCTC 2 cut(s) 127, 187
BsmBI CGTCTC 2 cut(s) 127, 187
BsmFI GGGAC 7 cut(s) 58, 67, 272, 290, 506, 1001, 1022
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 4 cut(s) 242, 835, 864, 894
BsoBI CYCGRG 1 cut(s) 836
Bsp1286I GDGCHC 2 cut(s) 429, 633
Bsp143I GATC 4 cut(s) 549, 579, 604, 651
BspACI CCGC 8 cut(s) 88, 198, 201, 268, 283, 328, 576, 1171
BspANI GGCC 4 cut(s) 242, 835, 864, 894
BspCNI CTCAG 5 cut(s) 510, 645, 775, 858, 1163
BspFNI CGCG 2 cut(s) 270, 285
BspLI GGNNCC 4 cut(s) 343, 428, 895, 1168
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 3 cut(s) 557, 587, 646
BspT107I GGYRCC 2 cut(s) 341, 426
BspTI CTTAAG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 1125
BssECI CCNNGG 4 cut(s) 273, 716, 792, 837
BssMI GATC 4 cut(s) 549, 579, 604, 651
BssNI GRCGYC 3 cut(s) 246, 342, 351
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 3 cut(s) 274, 320, 573
Bst4CI ACNGT 1 cut(s) 922
BstACI GRCGYC 3 cut(s) 246, 342, 351
BstAFI CTTAAG 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 24, 177
BstDEI CTNAG 5 cut(s) 518, 632, 762, 866, 1150
BstDSI CCRYGG 1 cut(s) 716
BstF5I GGATG 1 cut(s) 847
BstFNI CGCG 2 cut(s) 270, 285
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 2 cut(s) 272, 344
BstKTI GATC 4 cut(s) 552, 582, 607, 654
BstMAI GTCTC 2 cut(s) 127, 187
BstMBI GATC 4 cut(s) 549, 579, 604, 651
BstMCI CGRYCG 1 cut(s) 875
BstMWI GCNNNNNNNGC 3 cut(s) 60, 348, 568
BstNI CCWGG 3 cut(s) 274, 320, 573
BstNSI RCATGY 2 cut(s) 406, 619
BstSCI CCNGG 3 cut(s) 272, 318, 571
BstSFI CTRYAG 1 cut(s) 1023
BstSLI GKGCMC 1 cut(s) 429
BstUI CGCG 2 cut(s) 270, 285
BstV1I GCAGC 2 cut(s) 1062, 1174
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 651
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 651
BsuRI GGCC 4 cut(s) 242, 835, 864, 894
BtgI CCRYGG 1 cut(s) 716
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 847
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 4 cut(s) 733, 918, 1020, 1132
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 24, 177
CfoI GCGC 2 cut(s) 272, 344
Cfr13I GGNCC 3 cut(s) 4, 834, 893
CseI GACGC 2 cut(s) 274, 340
Csp6I GTAC 4 cut(s) 400, 721, 856, 1018
CviAII CATG 6 cut(s) 104, 205, 304, 403, 616, 984
CviQI GTAC 4 cut(s) 400, 721, 856, 1018
DdeI CTNAG 5 cut(s) 518, 632, 762, 866, 1150
DinI GGCGCC 1 cut(s) 343
DpnI GATC 4 cut(s) 551, 581, 606, 653
DpnII GATC 4 cut(s) 549, 579, 604, 651
DraI TTTAAA 1 cut(s) 460
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EciI GGCGGA 2 cut(s) 187, 343
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 864
Eco24I GRGCYC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 4 cut(s) 527, 629, 709, 1116
Eco88I CYCGRG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 631
EcoRII CCWGG 3 cut(s) 272, 318, 571
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 633
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 2 cut(s) 127, 187
FaeI CATG 6 cut(s) 107, 208, 307, 406, 619, 987
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 7 cut(s) 58, 67, 272, 290, 506, 1001, 1022
FatI CATG 6 cut(s) 103, 204, 303, 402, 615, 983
FauI CCCGC 3 cut(s) 95, 569, 1178
FblI GTMKAC 1 cut(s) 871
Fnu4HI GCNGC 3 cut(s) 201, 1051, 1188
FokI GGATG 1 cut(s) 854
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 3 cut(s) 201, 1051, 1188
FspBI CTAG 1 cut(s) 1038
GlaI GCGC 2 cut(s) 271, 343
GluI GCNGC 3 cut(s) 201, 1051, 1188
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 4 cut(s) 242, 835, 864, 894
HapII CCGG 3 cut(s) 32, 848, 1174
HgaI GACGC 2 cut(s) 274, 340
HhaI GCGC 2 cut(s) 272, 344
Hin1I GRCGYC 3 cut(s) 246, 342, 351
Hin1II CATG 6 cut(s) 107, 208, 307, 406, 619, 987
Hin6I GCGC 2 cut(s) 270, 342
HinP1I GCGC 2 cut(s) 270, 342
HincII GTYRAC 2 cut(s) 872, 1156
HindII GTYRAC 2 cut(s) 872, 1156
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 4 cut(s) 188, 411, 760, 868
HpaII CCGG 3 cut(s) 32, 848, 1174
HphI GGTGA 2 cut(s) 292, 610
Hpy166II GTNNAC 5 cut(s) 872, 918, 943, 1020, 1156
Hpy188I TCNGA 8 cut(s) 142, 187, 519, 609, 759, 765, 913, 1096
Hpy188III TCNNGA 3 cut(s) 539, 668, 680
Hpy8I GTNNAC 5 cut(s) 872, 918, 943, 1020, 1156
Hpy99I CGWCG 5 cut(s) 236, 248, 251, 350, 356
HpyAV CCTTC 6 cut(s) 109, 230, 325, 604, 791, 1040
HpyCH4III ACNGT 1 cut(s) 922
HpyCH4IV ACGT 2 cut(s) 71, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 348, 568
HpyF3I CTNAG 5 cut(s) 518, 632, 762, 866, 1150
HpySE526I ACGT 2 cut(s) 71, 246
Hsp92I GRCGYC 3 cut(s) 246, 342, 351
Hsp92II CATG 6 cut(s) 107, 208, 307, 406, 619, 987
HspAI GCGC 2 cut(s) 270, 342
KasI GGCGCC 1 cut(s) 341
Kzo9I GATC 4 cut(s) 549, 579, 604, 651
LmnI GCTCC 5 cut(s) 379, 628, 1118, 1172, 1222
Lsp1109I GCAGC 2 cut(s) 1062, 1174
LweI GCATC 3 cut(s) 871, 961, 1077
MaeI CTAG 1 cut(s) 1038
MaeII ACGT 2 cut(s) 71, 246
MaeIII GTNAC 2 cut(s) 67, 598
MalI GATC 4 cut(s) 551, 581, 606, 653
MboI GATC 4 cut(s) 549, 579, 604, 651
MboII GAAGA 3 cut(s) 119, 520, 1109
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 2 cut(s) 429, 633
MluCI AATT 1 cut(s) 591
Mly113I GGCGCC 1 cut(s) 342
MlyI GAGTC 3 cut(s) 182, 754, 877
MmeI TCCRAC 2 cut(s) 150, 669
MroXI GAANNNNTTC 2 cut(s) 62, 335
MseI TTAA 3 cut(s) 258, 459, 567
MslI CAYNNNNRTG 2 cut(s) 710, 995
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 3 cut(s) 32, 848, 1174
MspR9I CCNGG 3 cut(s) 274, 320, 573
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 3 cut(s) 274, 320, 573
MvnI CGCG 2 cut(s) 270, 285
MwoI GCNNNNNNNGC 3 cut(s) 60, 348, 568
NarI GGCGCC 1 cut(s) 342
NdeII GATC 4 cut(s) 549, 579, 604, 651
NlaIII CATG 6 cut(s) 107, 208, 307, 406, 619, 987
NlaIV GGNNCC 4 cut(s) 343, 428, 895, 1168
NmuCI GTSAC 2 cut(s) 67, 598
NspI RCATGY 2 cut(s) 406, 619
PceI AGGCCT 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 2 cut(s) 62, 335
PfeI GAWTC 1 cut(s) 411
PflFI GACNNNGTC 2 cut(s) 248, 350
PkrI GCNGC 3 cut(s) 202, 1052, 1189
PleI GAGTC 3 cut(s) 182, 754, 876
PluTI GGCGCC 1 cut(s) 345
PpsI GAGTC 3 cut(s) 182, 754, 876
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 3 cut(s) 272, 318, 571
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 3 cut(s) 272, 318, 571
PspN4I GGNNCC 4 cut(s) 343, 428, 895, 1168
PspPI GGNCC 3 cut(s) 4, 834, 893
PsrI GAACNNNNNNTAC 2 cut(s) 728, 760
PstI CTGCAG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 651
PsyI GACNNNGTC 2 cut(s) 248, 350
RsaI GTAC 4 cut(s) 401, 722, 857, 1019
RsaNI GTAC 4 cut(s) 400, 721, 856, 1018
RseI CAYNNNNRTG 2 cut(s) 710, 995
SacI GAGCTC 1 cut(s) 633
SalI GTCGAC 1 cut(s) 870
SaqAI TTAA 3 cut(s) 258, 459, 567
SatI GCNGC 3 cut(s) 201, 1051, 1188
Sau3AI GATC 4 cut(s) 549, 579, 604, 651
Sau96I GGNCC 3 cut(s) 4, 834, 893
SchI GAGTC 3 cut(s) 182, 754, 877
ScrFI CCNGG 3 cut(s) 274, 320, 573
SduI GDGCHC 2 cut(s) 429, 633
SfaNI GCATC 3 cut(s) 871, 961, 1077
SfcI CTRYAG 1 cut(s) 1023
SfoI GGCGCC 1 cut(s) 343
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 710, 995
SmlI CTYRAG 2 cut(s) 257, 539
SmoI CTYRAG 2 cut(s) 257, 539
Sse9I AATT 1 cut(s) 591
SseBI AGGCCT 1 cut(s) 864
SsiI CCGC 8 cut(s) 88, 198, 201, 268, 283, 328, 576, 1171
SspDI GGCGCC 1 cut(s) 341
SspMI CTAG 1 cut(s) 1038
SstI GAGCTC 1 cut(s) 633
StuI AGGCCT 1 cut(s) 864
StyD4I CCNGG 3 cut(s) 272, 318, 571
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 1 cut(s) 922
TaiI ACGT 2 cut(s) 74, 249
TaqI TCGA 2 cut(s) 414, 871
TaqII GACCGA 1 cut(s) 889
TasI AATT 1 cut(s) 591
TatI WGTACW 1 cut(s) 1017
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 3 cut(s) 258, 459, 567
Tru9I TTAA 3 cut(s) 258, 459, 567
TscAI CASTG 4 cut(s) 733, 925, 1027, 1132
TseFI GTSAC 2 cut(s) 67, 598
TseI GCWGC 2 cut(s) 1050, 1187
Tsp45I GTSAC 2 cut(s) 67, 598
TspDTI ATGAA 3 cut(s) 120, 694, 817
TspGWI ACGGA 2 cut(s) 423, 873
TspRI CASTG 4 cut(s) 733, 925, 1027, 1132
Tth111I GACNNNGTC 2 cut(s) 248, 350
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 2 cut(s) 406, 619
XmiI GTMKAC 1 cut(s) 871
XmnI GAANNNNTTC 2 cut(s) 62, 335
XspI CTAG 1 cut(s) 1038
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.