Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012321

Physical Location & Seq

Genomic Coordinates Reverse (-)

19209515 .. 19210849

Gene Structure 1335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAGCTAGGTTATTGTTCCGTCGAAGTTCTCAAATCCTCCGATCAATTCAACGAAATCCTCAAATCTCATCGTCATTCGAATCACCACCTTGCCCGATTTTTCACTCATTGACCACCGCCTCACCAGATCCATCGCGATTATCATCCTTAACCTTCCTCCGATCTCTCTCCATCGCTCGTCGCGGTCCAACACGTCCTAAGAAAATCGATATCGGAGCCAAAGCGCGTCAGATGCAGAATCGCCGTTTATGGACCTACGCGCTAACCTTCAGCTGCATCGCCGGATTCGTAGTTATCGTCCTTAACCAATTTCAGGATCAGCTTGTCTTCTACCTAACGCCATCAGACGCTATGGAGAAATTCGCAGAGAATCCAACAAAGAACAAATTCAGACTCGGTGGTTTGGTTCTAGAAGGTAGCGTTGCGCAGCCGGCGGCGTCACAGGAGATGGAGTTTGTGATCACTGATCTGATCACTGATATTTTGGTTAGGTATAAAGGATCTTTGCCGGATCTGTTTAGGGAAGGTCATTCAGTTGTGGTTGAAGGATTCATTAAGCCGTATACAGATGAAGTAAGGAAGGAAGTTTCTACAAAACCTATTTCGAAGAAAGCTAGGAACCTCGATTGTTTCTTCTCGGCGACTGAAGTTTTGGCTAAGCATGATGAGAAGTATATGCCACAGGAAGTTGCGGCGGCGATTGAGAAGAATAAGAAAATTATTGAAGCGGCGGCGACTGAACAAGCTGCTGAAGTTGCGGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

256

Amino Acids

28.6

Weight (kDa)

9.44

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmE	PF03100	110 - 229	8.2e-28	CcmE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51790
fragaria_vesca	FvH4_3g43060
malus_domestica	MD03G1024200.v1.1 MD11G1029300.v1.1
prunus_persica	Prupe.6G023600_v2.0.a1 Prupe.6G023600_v2.0.a1
pyrus_communis	pycom11g02280
rosa_chinensis	RchiOBHm_Chr5g0077121
rosa_laevigata	RLG00000036667
rosa_multiflora	Rmu_sc0009061.1_g000004 Rmu_sc0009061.1_g000005 Rmu_sc0010146.1_g000001 Rmu_sc0021865.1_g000001 Rmu_sc0021865.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004970
rosa_rugosa	Rorug05G0452000
rosa_samantha	Rh5CG552300 Rh5DG540300
rosa_wichuraiana	Rw5G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	566
AccII	CGCG	4 cut(s)	139, 186, 229, 263
AciI	CCGC	8 cut(s)	120, 186, 437, 695, 698, 731, 734, 761
AclWI	GGATC	4 cut(s)	125, 327, 511, 522
AcsI	RAATTY	2 cut(s)	362, 389
AcuI	CTGAAG	2 cut(s)	256, 669
AcyI	GRCGYC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	53, 548, 728
AjiI	CACGTC	1 cut(s)	197
AluBI	AGCT	5 cut(s)	8, 276, 325, 617, 749
AluI	AGCT	5 cut(s)	8, 276, 325, 617, 749
AlwI	GGATC	4 cut(s)	125, 327, 511, 522
ApeKI	GCWGC	4 cut(s)	5, 276, 430, 749
ApoI	RAATTY	2 cut(s)	362, 389
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	229, 265, 430
AspS9I	GGNCC	2 cut(s)	188, 255
AsuHPI	GGTGA	2 cut(s)	78, 117
AsuII	TTCGAA	2 cut(s)	81, 608
AvaII	GGWCC	2 cut(s)	188, 255
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	17, 263, 442, 736
BccI	CCATC	4 cut(s)	142, 182, 352, 445
BceAI	ACGGC	2 cut(s)	231, 547
BclI	TGATCA	2 cut(s)	462, 474
BfaI	CTAG	3 cut(s)	9, 413, 618
BlpI	GCTNAGC	1 cut(s)	660
Bme18I	GGWCC	2 cut(s)	188, 255
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	188, 255
BmiI	GGNNCC	2 cut(s)	220, 623
BmsI	GCATC	2 cut(s)	225, 288
BpiI	GAAGAC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	2 cut(s)	81, 608
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	210
BseGI	GGATG	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseXI	GCAGC	4 cut(s)	17, 263, 442, 736
Bsh1236I	CGCG	4 cut(s)	139, 186, 229, 263
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	285, 434, 512
BslI	CCNNNNNNNGG	1 cut(s)	316
Bsp119I	TTCGAA	2 cut(s)	81, 608
Bsp143I	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
Bsp1720I	GCTNAGC	1 cut(s)	660
Bsp68I	TCGCGA	1 cut(s)	139
BspACI	CCGC	8 cut(s)	120, 186, 437, 695, 698, 731, 734, 761
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	4 cut(s)	139, 186, 229, 263
BspLI	GGNNCC	2 cut(s)	220, 623
BspPI	GGATC	4 cut(s)	125, 327, 511, 522
BspT104I	TTCGAA	2 cut(s)	81, 608
BsrFI	RCCGGY	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	433
BssMI	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
BssNAI	GTATAC	1 cut(s)	567
BssNI	GRCGYC	1 cut(s)	440
Bst1107I	GTATAC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	440
BstBI	TTCGAA	2 cut(s)	81, 608
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	201, 660, 768
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	4 cut(s)	139, 186, 229, 263
BstHHI	GCGC	3 cut(s)	229, 265, 430
BstKTI	GATC	9 cut(s)	47, 133, 167, 322, 465, 472, 477, 506, 517
BstMBI	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 434, 758
BstUI	CGCG	4 cut(s)	139, 186, 229, 263
BstV1I	GCAGC	4 cut(s)	17, 263, 442, 736
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	3 cut(s)	130, 503, 514
BstYI	RGATCY	3 cut(s)	130, 503, 514
BstZ17I	GTATAC	1 cut(s)	567
Bsu15I	ATCGAT	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	210
BtgZI	GCGATG	3 cut(s)	120, 160, 265
BtrI	CACGTC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	465, 477
BtuMI	TCGCGA	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	3 cut(s)	229, 265, 430
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	188, 255
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	3 cut(s)	218, 359, 429
CviAII	CATG	1 cut(s)	665
DdeI	CTNAG	3 cut(s)	201, 660, 768
DpnI	GATC	9 cut(s)	46, 132, 166, 321, 464, 471, 476, 505, 516
DpnII	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	188, 255
Eco57I	CTGAAG	2 cut(s)	256, 669
EcoRV	GATATC	1 cut(s)	214
FaeI	CATG	1 cut(s)	668
FaiI	YATR	7 cut(s)	253, 356, 498, 567, 666, 678, 680
FatI	CATG	1 cut(s)	664
FbaI	TGATCA	2 cut(s)	462, 474
FblI	GTMKAC	1 cut(s)	566
FokI	GGATG	1 cut(s)	133
FspBI	CTAG	3 cut(s)	9, 413, 618
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	3 cut(s)	228, 264, 429
HapII	CCGG	3 cut(s)	285, 434, 512
HgaI	GACGC	3 cut(s)	218, 359, 429
HhaI	GCGC	3 cut(s)	229, 265, 430
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	1 cut(s)	668
Hin6I	GCGC	3 cut(s)	227, 263, 428
HinP1I	GCGC	3 cut(s)	227, 263, 428
HinfI	GANTC	6 cut(s)	83, 241, 288, 373, 396, 552
HpaII	CCGG	3 cut(s)	285, 434, 512
HphI	GGTGA	2 cut(s)	78, 117
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	7 cut(s)	44, 164, 218, 234, 349, 395, 474
Hpy188III	TCNNGA	3 cut(s)	138, 317, 413
Hpy8I	GTNNAC	1 cut(s)	567
Hpy99I	CGWCG	2 cut(s)	27, 186
HpyAV	CCTTC	6 cut(s)	166, 280, 410, 521, 542, 577
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	238, 279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 434, 758
HpyF3I	CTNAG	3 cut(s)	201, 660, 768
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	1 cut(s)	668
HspAI	GCGC	3 cut(s)	227, 263, 428
KroI	GCCGGC	1 cut(s)	433
KroNI	GCCGGC	1 cut(s)	435
Ksp22I	TGATCA	2 cut(s)	462, 474
Kzo9I	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	7 cut(s)	141, 298, 302, 431, 447, 525, 671
Lsp1109I	GCAGC	4 cut(s)	17, 263, 442, 736
LweI	GCATC	2 cut(s)	225, 288
MaeI	CTAG	3 cut(s)	9, 413, 618
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	9 cut(s)	46, 132, 166, 321, 464, 471, 476, 505, 516
MboI	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
MboII	GAAGA	4 cut(s)	322, 622, 628, 721
MflI	RGATCY	3 cut(s)	130, 503, 514
MluCI	AATT	5 cut(s)	48, 311, 362, 389, 720
MlyI	GAGTC	1 cut(s)	390
MmeI	TCCRAC	2 cut(s)	215, 401
MnlI	CCTC	5 cut(s)	50, 72, 133, 170, 635
MroNI	GCCGGC	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	152, 306, 558
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	3 cut(s)	285, 434, 512
MvnI	CGCG	4 cut(s)	139, 186, 229, 263
MwoI	GCNNNNNNNGC	3 cut(s)	235, 434, 758
NaeI	GCCGGC	1 cut(s)	435
NdeII	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
NgoMIV	GCCGGC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	668
NlaIV	GGNNCC	2 cut(s)	220, 623
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	1 cut(s)	441
NruI	TCGCGA	1 cut(s)	139
NsbI	TGCGCA	1 cut(s)	429
NspV	TTCGAA	2 cut(s)	81, 608
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 297
PdiI	GCCGGC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	5 cut(s)	83, 241, 288, 373, 552
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	220, 623
PspPI	GGNCC	2 cut(s)	188, 255
PsuI	RGATCY	3 cut(s)	130, 503, 514
PvuII	CAGCTG	1 cut(s)	276
RruI	TCGCGA	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	152, 306, 558
Sau3AI	GATC	9 cut(s)	44, 130, 164, 319, 462, 469, 474, 503, 514
Sau96I	GGNCC	2 cut(s)	188, 255
SchI	GAGTC	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	225, 288
SfuI	TTCGAA	2 cut(s)	81, 608
SinI	GGWCC	2 cut(s)	188, 255
Sse9I	AATT	5 cut(s)	48, 311, 362, 389, 720
SsiI	CCGC	8 cut(s)	120, 186, 437, 695, 698, 731, 734, 761
SspMI	CTAG	3 cut(s)	9, 413, 618
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	5 cut(s)	25, 81, 210, 608, 627
TasI	AATT	5 cut(s)	48, 311, 362, 389, 720
TauI	GCSGC	6 cut(s)	440, 698, 701, 734, 737, 764
TfiI	GAWTC	5 cut(s)	83, 241, 288, 373, 552
Tru1I	TTAA	3 cut(s)	152, 306, 558
Tru9I	TTAA	3 cut(s)	152, 306, 558
TscAI	CASTG	2 cut(s)	472, 484
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	4 cut(s)	5, 276, 430, 749
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	544, 588
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	472, 484
VpaK11BI	GGWCC	2 cut(s)	188, 255
XapI	RAATTY	2 cut(s)	362, 389
XbaI	TCTAGA	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	3 cut(s)	9, 413, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.