Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012321

Physical Location & Seq

Genomic Coordinates Reverse (-)

1982968 .. 1983759

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCACTCGCATCGCCCTCCGCCTCAAATCCCACCTCCTCCGCACCACAACCCCGATCCACCACCACCCCGTATTCAAATCTCCACCTTCCATCTTCTCCCTCCTCTCCACCCCCCATCTCCACCCTCCATCAAATCCCCACCTCCCCTTCACTCTCCGCTTCCTCTCCACCGCCCGCCGCGGCCCGACCCGCCCCAAACCCGTCGACATCGGCGCCCGGGCTCGCCAGCTCCAAACCCGCCGCCTCTGGACCTACGCCCTGACCTTCAGCTGCATCGCCGGATTCATTGTCATCGTCCTCAACAGCTTCCAAGACCAGCTCGTCTTCTACGTCACTCCAACCGACGCTATCGAGAAATACTCCGCAAACCCTAGCAAGAGCAAGTTCCGGGTCGGCGGCCTCGTCCTTGAAGGTAGCGTCGTCCAGCCGTCTTCCTCGCCGGAGATGGAGTTCGTCGTCACCGATTTGATGACCGATATCTTGGTCCGGTACAAGGGATCATTGCCCGATTTGTTCCGGGAGGGCCACTCGGTGGTGGTGGAGGGATTTGTGAAGCCTTTCACGGAGGAGATTCGGAGGGAAATTTCGACGAAAAGCATATCGGAAAAGGCGAGGAGCGGCGAGTGCTACTTTGCCGCCACGGAGGTTTTGGCCAAGCATGACGAGAAGTACATGCCGGGTGAAGTTGCTGCGGCCATAGAGAAGAATAAGAAGAAGCTGGAGGAGGCAGGTGCCGGTGCCGGTGAAGGTGAAGCTGCTAAAGATGGTAAAGATGCTAAGAGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

264

Amino Acids

29.12

Weight (kDa)

9.35

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmE	PF03100	109 - 227	2.2e-27	CcmE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51790
fragaria_vesca	FvH4_3g43060
malus_domestica	MD03G1024200.v1.1 MD11G1029300.v1.1
prunus_persica	Prupe.6G023600_v2.0.a1 Prupe.6G023600_v2.0.a1
pyrus_communis	pycom11g02280
rosa_chinensis	RchiOBHm_Chr5g0077121
rosa_laevigata	RLG00000036667
rosa_multiflora	Rmu_sc0009061.1_g000004 Rmu_sc0009061.1_g000005 Rmu_sc0010146.1_g000001 Rmu_sc0021865.1_g000001 Rmu_sc0021865.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004970
rosa_rugosa	Rorug05G0452000
rosa_samantha	Rh5CG552300 Rh5DG540300
rosa_wichuraiana	Rw5G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	722
AasI	GACNNNNNNGTC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	722
AccB1I	GGYRCC	3 cut(s)	215, 734, 740
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccBSI	CCGCTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	183
AclWI	GGATC	2 cut(s)	52, 508
AcoI	YGGCCR	3 cut(s)	3, 654, 696
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	535
AfaI	GTAC	2 cut(s)	494, 674
AfiI	CCNNNNNNNGG	2 cut(s)	496, 535
AgsI	TTSAA	2 cut(s)	79, 413
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
AluBI	AGCT	6 cut(s)	232, 273, 309, 322, 721, 758
AluI	AGCT	6 cut(s)	232, 273, 309, 322, 721, 758
AlwI	GGATC	2 cut(s)	52, 508
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	6 cut(s)	3, 184, 400, 526, 654, 696
ApeKI	GCWGC	3 cut(s)	273, 692, 758
ApoI	RAATTY	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	185, 252, 487, 526
AsuC2I	CCSGG	5 cut(s)	220, 221, 392, 521, 681
AsuHPI	GGTGA	4 cut(s)	454, 695, 758, 764
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	2 cut(s)	252, 487
BalI	TGGCCA	2 cut(s)	5, 656
BanI	GGYRCC	3 cut(s)	215, 734, 740
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	319, 426
BbvI	GCAGC	3 cut(s)	260, 679, 745
BccI	CCATC	5 cut(s)	101, 126, 139, 442, 761
BceAI	ACGGC	1 cut(s)	415
BcnI	CCSGG	5 cut(s)	220, 221, 392, 521, 681
BfaI	CTAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	722
Bme1390I	CCNGG	5 cut(s)	220, 221, 392, 521, 681
Bme18I	GGWCC	2 cut(s)	252, 487
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	4 cut(s)	185, 252, 487, 526
BmiI	GGNNCC	3 cut(s)	217, 736, 742
BmrFI	CCNGG	5 cut(s)	220, 221, 392, 521, 681
BmsI	GCATC	3 cut(s)	21, 285, 766
BpiI	GAAGAC	2 cut(s)	319, 426
BplI	GAGNNNNNCTC	4 cut(s)	347, 379, 515, 547
BpmI	CTGGAG	1 cut(s)	743
BpuMI	CCSGG	5 cut(s)	220, 221, 392, 521, 681
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	181, 219, 642
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 535
Bse118I	RCCGGY	2 cut(s)	737, 743
Bse3DI	GCAATG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	181, 219, 642
BseLI	CCNNNNNNNGG	2 cut(s)	496, 535
BseMI	GCAATG	1 cut(s)	503
BseRI	GAGGAG	5 cut(s)	29, 95, 584, 631, 740
BseXI	GCAGC	3 cut(s)	260, 679, 745
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	6 cut(s)	5, 186, 402, 528, 656, 698
BshNI	GGYRCC	3 cut(s)	215, 734, 740
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	9 cut(s)	220, 282, 391, 443, 490, 520, 680, 738, 744
BslI	CCNNNNNNNGG	2 cut(s)	496, 535
BsnI	GGCC	6 cut(s)	5, 186, 402, 528, 656, 698
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	57, 500
BspANI	GGCC	6 cut(s)	5, 186, 402, 528, 656, 698
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	217, 736, 742
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	52, 508
BspT107I	GGYRCC	3 cut(s)	215, 734, 740
BsrBI	CCGCTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	2 cut(s)	737, 743
BssAI	RCCGGY	2 cut(s)	737, 743
BssECI	CCNNGG	3 cut(s)	181, 219, 642
BssMI	GATC	2 cut(s)	57, 500
BssNI	GRCGYC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	178, 226, 230
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	2 cut(s)	181, 642
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	60, 503
BstMBI	GATC	2 cut(s)	57, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 627
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	5 cut(s)	218, 219, 390, 519, 679
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	260, 679, 745
BstV2I	GAAGAC	2 cut(s)	319, 426
BsuRI	GGCC	6 cut(s)	5, 186, 402, 528, 656, 698
BtgI	CCRYGG	2 cut(s)	181, 642
BtgZI	GCGATG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	3 cut(s)	178, 226, 230
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	2 cut(s)	737, 743
Cfr13I	GGNCC	4 cut(s)	185, 252, 487, 526
Cfr42I	CCGCGG	1 cut(s)	184
Cfr9I	CCCGGG	1 cut(s)	219
CseI	GACGC	2 cut(s)	356, 409
Csp6I	GTAC	2 cut(s)	493, 673
CviAII	CATG	2 cut(s)	662, 676
CviQI	GTAC	2 cut(s)	493, 673
DdeI	CTNAG	1 cut(s)	780
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	2 cut(s)	59, 502
DpnII	GATC	2 cut(s)	57, 500
DraIII	CACNNNGTG	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	3 cut(s)	3, 654, 696
EciI	GGCGGA	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	252, 487
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	226
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
FaeI	CATG	2 cut(s)	665, 679
FaiI	YATR	4 cut(s)	602, 663, 677, 701
FatI	CATG	2 cut(s)	661, 675
FauI	CCCGC	3 cut(s)	185, 200, 248
FblI	GTMKAC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	5, 186, 402, 528, 656, 698
HapII	CCGG	9 cut(s)	220, 282, 391, 443, 490, 520, 680, 738, 744
HgaI	GACGC	2 cut(s)	356, 409
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	665, 679
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	285, 574
HpaII	CCGG	9 cut(s)	220, 282, 391, 443, 490, 520, 680, 738, 744
HphI	GGTGA	4 cut(s)	454, 695, 758, 764
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	579, 607
Hpy188III	TCNNGA	2 cut(s)	250, 355
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	5 cut(s)	209, 350, 425, 461, 595
HpyAV	CCTTC	5 cut(s)	99, 160, 277, 407, 743
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 627
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	665, 679
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	57, 500
LmnI	GCTCC	2 cut(s)	237, 618
Lsp1109I	GCAGC	3 cut(s)	260, 679, 745
LweI	GCATC	3 cut(s)	21, 285, 766
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	334, 460
MalI	GATC	2 cut(s)	59, 502
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	2 cut(s)	57, 500
MboII	GAAGA	5 cut(s)	88, 319, 426, 718, 727
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	2 cut(s)	5, 656
MluCI	AATT	1 cut(s)	585
MluNI	TGGCCA	2 cut(s)	5, 656
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	365
Mox20I	TGGCCA	2 cut(s)	5, 656
MroXI	GAANNNNTTC	1 cut(s)	560
MscI	TGGCCA	2 cut(s)	5, 656
Msp20I	TGGCCA	2 cut(s)	5, 656
MspA1I	CMGCKG	2 cut(s)	183, 273
MspI	CCGG	9 cut(s)	220, 282, 391, 443, 490, 520, 680, 738, 744
MspR9I	CCNGG	5 cut(s)	220, 221, 392, 521, 681
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	192, 627
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	5 cut(s)	220, 221, 392, 521, 681
NdeII	GATC	2 cut(s)	57, 500
NlaIII	CATG	2 cut(s)	665, 679
NlaIV	GGNNCC	3 cut(s)	217, 736, 742
NmuCI	GTSAC	2 cut(s)	334, 460
NspI	RCATGY	1 cut(s)	679
PaqCI	CACCTGC	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	4 cut(s)	330, 402, 462, 611
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	285, 574
PflMI	CCANNNNNTGG	1 cut(s)	535
PfoI	TCCNGGA	1 cut(s)	519
PluTI	GGCGCC	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	217, 736, 742
PspPI	GGNCC	4 cut(s)	185, 252, 487, 526
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	2 cut(s)	494, 674
RsaNI	GTAC	2 cut(s)	493, 673
SacII	CCGCGG	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	57, 500
Sau96I	GGNCC	4 cut(s)	185, 252, 487, 526
ScrFI	CCNGG	5 cut(s)	220, 221, 392, 521, 681
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	3 cut(s)	21, 285, 766
SfoI	GGCGCC	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	252, 487
SmaI	CCCGGG	1 cut(s)	221
SrfI	GCCCGGGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	585
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	5 cut(s)	218, 219, 390, 519, 679
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	207, 354, 590
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	1 cut(s)	585
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	7 cut(s)	183, 186, 246, 402, 624, 641, 698
TfiI	GAWTC	2 cut(s)	285, 574
TseFI	GTSAC	2 cut(s)	334, 460
TseI	GCWGC	3 cut(s)	273, 692, 758
Tsp45I	GTSAC	2 cut(s)	334, 460
TspDTI	ATGAA	1 cut(s)	277
TspGWI	ACGGA	2 cut(s)	581, 659
TspMI	CCCGGG	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	2 cut(s)	252, 487
XapI	RAATTY	1 cut(s)	585
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.