Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012321

Physical Location & Seq

Genomic Coordinates Reverse (-)

1889862 .. 1891379

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G023600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCAATCGCATCGCCCTCCGCCTCAAATCCCACCTCCTTCGCATCACAACCCCCATCCACCCCCGTCCCTTCATCCAATCTCCACCGTTGATCTTCTCCCCACTCTTCGACCCCCATCTCCAACGTTCAACAAATTTCCTCCTCCCGTTCACTCTCCGCTTCCTCTCCACCTCTCGCCGTGGCCCGATCCGGCCCAAACCCGTCGACATCGCGGGCCGGGCGCGCCAGCTCCAAACCCGACGCCTTTGGACCTATGCACTAACCTTCAGCTGCATCGCGGGCTTCATTGTCATCGTCCTCAATAGCTTCCAAGACCAGCTCGTCTTCTACGTGACCCCAACCGACGCTCTAGAGAAATACTCAGCAAACCCTAGCAAGAGCAAGTTCAGGATCGGCGGTCTGGTCCTCGAAGGCAGCGTGCTCCAGCCCGCCTCGTCGCCCGAGATGGAGTTCGTCGTCACCGATTTGATGACCGATATATTGGTCCGATACAAAGGCTCCTTGCCTGATTTGTTTCGGGAGGGTCACTCGGTTGTGGTCGAGGGCTTCGTCAAGCCTTTTACGGATGAAATTCGAAGGGAGATTTCAACGAAGAGTGTCTCGGAGAAGGCGAGGAGCGGCGAGTGCTATTTCGCCGCCACGGAGGTTTTAGCAAAGCATGACGAGAAGTACATGCCCGGTGAAGTCGCTGAGGCGATCGAGAAGAACAAGAAGCTCCTCGAGGCCGGTCGGGCAGGTGGTGGAGAGTCTGAAAACCCCAAAAGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

258

Amino Acids

28.85

Weight (kDa)

9.43

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51790
fragaria_vesca	FvH4_3g43060
malus_domestica	MD03G1024200.v1.1 MD11G1029300.v1.1
prunus_persica	Prupe.6G023600_v2.0.a1 Prupe.6G023600_v2.0.a1
pyrus_communis	pycom11g02280
rosa_chinensis	RchiOBHm_Chr5g0077121
rosa_laevigata	RLG00000036667
rosa_multiflora	Rmu_sc0009061.1_g000004 Rmu_sc0009061.1_g000005 Rmu_sc0010146.1_g000001 Rmu_sc0021865.1_g000001 Rmu_sc0021865.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004970
rosa_rugosa	Rorug05G0452000
rosa_samantha	Rh5CG552300 Rh5DG540300
rosa_wichuraiana	Rw5G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
AasI	GACNNNNNNGTC	1 cut(s)	323
AbsI	CCTCGAGG	1 cut(s)	722
Acc36I	ACCTGC	1 cut(s)	728
AccBSI	CCGCTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	3 cut(s)	215, 226, 281
AciI	CCGC	8 cut(s)	22, 160, 215, 281, 399, 432, 621, 639
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	2 cut(s)	184, 401
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	136, 573
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	1 cut(s)	674
AgsI	TTSAA	2 cut(s)	132, 591
AluBI	AGCT	5 cut(s)	232, 273, 309, 322, 718
AluI	AGCT	5 cut(s)	232, 273, 309, 322, 718
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	184, 401
Ama87I	CYCGRG	2 cut(s)	443, 722
AoxI	GGCC	5 cut(s)	3, 184, 194, 217, 726
ApeKI	GCWGC	2 cut(s)	273, 417
ApoI	RAATTY	2 cut(s)	136, 573
AscI	GGCGCGCC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	226, 228
AspS9I	GGNCC	6 cut(s)	185, 195, 217, 252, 406, 487
AsuC2I	CCSGG	2 cut(s)	221, 681
AsuHPI	GGTGA	2 cut(s)	454, 695
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	2 cut(s)	443, 722
AvaII	GGWCC	3 cut(s)	252, 406, 487
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	260, 429
BccI	CCATC	3 cut(s)	65, 126, 442
BceAI	ACGGC	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	221, 681
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	2 cut(s)	353, 375
BfuAI	ACCTGC	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	734
BisI	GCNGC	4 cut(s)	274, 418, 622, 639
BlsI	GCNGC	4 cut(s)	275, 419, 623, 640
Bme1390I	CCNGG	2 cut(s)	221, 681
Bme18I	GGWCC	3 cut(s)	252, 406, 487
BmeT110I	CYCGRG	2 cut(s)	443, 722
BmgT120I	GGNCC	6 cut(s)	185, 195, 217, 252, 406, 487
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	221, 681
BmsI	GCATC	3 cut(s)	21, 54, 285
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	4 cut(s)	347, 379, 515, 547
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	221, 681
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	181, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bse118I	RCCGGY	1 cut(s)	728
BseDI	CCNNGG	2 cut(s)	181, 642
BseGI	GGATG	3 cut(s)	57, 75, 574
BseMII	CTCAG	2 cut(s)	378, 684
BsePI	GCGCGC	1 cut(s)	224
BseRI	GAGGAG	3 cut(s)	134, 631, 710
BseXI	GCAGC	2 cut(s)	260, 429
Bsh1236I	CGCG	3 cut(s)	215, 226, 281
Bsh1285I	CGRYCG	2 cut(s)	702, 733
BshFI	GGCC	5 cut(s)	5, 186, 196, 219, 728
BsiEI	CGRYCG	2 cut(s)	702, 733
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	2 cut(s)	443, 722
BsiSI	CCGG	4 cut(s)	193, 220, 681, 729
BslFI	GGGAC	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	5 cut(s)	5, 186, 196, 219, 728
BsoBI	CYCGRG	2 cut(s)	443, 722
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	93, 189, 393, 699
BspACI	CCGC	8 cut(s)	22, 160, 215, 281, 399, 432, 621, 639
BspANI	GGCC	5 cut(s)	5, 186, 196, 219, 728
BspCNI	CTCAG	2 cut(s)	377, 685
BspFNI	CGCG	3 cut(s)	215, 226, 281
BspLI	GGNNCC	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	2 cut(s)	184, 401
BspT104I	TTCGAA	1 cut(s)	577
BsrBI	CCGCTC	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	728
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	2 cut(s)	181, 642
BssHII	GCGCGC	1 cut(s)	224
BssMI	GATC	4 cut(s)	93, 189, 393, 699
BssNI	GRCGYC	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	2 cut(s)	113, 590
BstACI	GRCGYC	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	6 cut(s)	217, 226, 230, 283, 422, 432
BstDEI	CTNAG	2 cut(s)	364, 693
BstDSI	CCRYGG	2 cut(s)	181, 642
BstF5I	GGATG	3 cut(s)	57, 75, 574
BstFNI	CGCG	3 cut(s)	215, 226, 281
BstHHI	GCGC	2 cut(s)	226, 228
BstKTI	GATC	4 cut(s)	96, 192, 396, 702
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	4 cut(s)	93, 189, 393, 699
BstMCI	CGRYCG	2 cut(s)	702, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 225, 282, 627, 734
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	219, 679
BstUI	CGCG	3 cut(s)	215, 226, 281
BstV1I	GCAGC	2 cut(s)	260, 429
BstV2I	GAAGAC	1 cut(s)	319
BsuRI	GGCC	5 cut(s)	5, 186, 196, 219, 728
BtgI	CCRYGG	2 cut(s)	181, 642
BtgZI	GCGATG	2 cut(s)	196, 262
BtsCI	GGATG	3 cut(s)	57, 75, 574
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	6 cut(s)	217, 226, 230, 283, 422, 432
CfoI	GCGC	2 cut(s)	226, 228
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	6 cut(s)	185, 195, 217, 252, 406, 487
CseI	GACGC	2 cut(s)	252, 356
Csp6I	GTAC	1 cut(s)	673
CviAII	CATG	2 cut(s)	662, 676
CviQI	GTAC	1 cut(s)	673
DdeI	CTNAG	2 cut(s)	364, 693
DpnI	GATC	4 cut(s)	95, 191, 395, 701
DpnII	GATC	4 cut(s)	93, 189, 393, 699
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	113, 590
EarI	CTCTTC	2 cut(s)	113, 590
EciI	GGCGGA	1 cut(s)	11
Eco47I	GGWCC	3 cut(s)	252, 406, 487
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	2 cut(s)	443, 722
FaeI	CATG	2 cut(s)	665, 679
FaiI	YATR	4 cut(s)	258, 482, 663, 677
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	661, 675
FauI	CCCGC	3 cut(s)	208, 274, 439
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	274, 418, 622, 639
FokI	GGATG	3 cut(s)	44, 62, 581
Fsp4HI	GCNGC	4 cut(s)	274, 418, 622, 639
FspBI	CTAG	2 cut(s)	353, 375
GlaI	GCGC	2 cut(s)	225, 227
GluI	GCNGC	4 cut(s)	274, 418, 622, 639
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	5 cut(s)	5, 186, 196, 219, 728
HapII	CCGG	4 cut(s)	193, 220, 681, 729
HgaI	GACGC	2 cut(s)	252, 356
HhaI	GCGC	2 cut(s)	226, 228
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	665, 679
Hin6I	GCGC	2 cut(s)	224, 226
HinP1I	GCGC	2 cut(s)	224, 226
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	749
HpaII	CCGG	4 cut(s)	193, 220, 681, 729
HphI	GGTGA	2 cut(s)	454, 695
Hpy166II	GTNNAC	2 cut(s)	153, 208
Hpy188I	TCNGA	3 cut(s)	491, 607, 754
Hpy188III	TCNNGA	4 cut(s)	353, 391, 521, 703
Hpy8I	GTNNAC	2 cut(s)	153, 208
Hpy99I	CGWCG	5 cut(s)	209, 246, 350, 442, 461
HpyAV	CCTTC	6 cut(s)	50, 82, 277, 407, 573, 604
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	127, 333
HpyCH4V	TGCA	2 cut(s)	260, 276
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 225, 282, 627, 734
HpyF3I	CTNAG	2 cut(s)	364, 693
HpySE526I	ACGT	2 cut(s)	127, 333
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	665, 679
HspAI	GCGC	2 cut(s)	224, 226
Kzo9I	GATC	4 cut(s)	93, 189, 393, 699
LmnI	GCTCC	5 cut(s)	237, 429, 506, 618, 723
Lsp1109I	GCAGC	2 cut(s)	260, 429
LweI	GCATC	3 cut(s)	21, 54, 285
MaeI	CTAG	2 cut(s)	353, 375
MaeII	ACGT	2 cut(s)	127, 333
MaeIII	GTNAC	3 cut(s)	334, 460, 527
MalI	GATC	4 cut(s)	95, 191, 395, 701
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	4 cut(s)	93, 189, 393, 699
MboII	GAAGA	5 cut(s)	88, 100, 319, 607, 718
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	136, 573
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	4 cut(s)	193, 220, 681, 729
MspR9I	CCNGG	2 cut(s)	221, 681
MvnI	CGCG	3 cut(s)	215, 226, 281
MwoI	GCNNNNNNNGC	5 cut(s)	221, 225, 282, 627, 734
NciI	CCSGG	2 cut(s)	221, 681
NdeII	GATC	4 cut(s)	93, 189, 393, 699
NlaIII	CATG	2 cut(s)	665, 679
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	3 cut(s)	334, 460, 527
NspI	RCATGY	1 cut(s)	679
NspV	TTCGAA	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	722
PalAI	GGCGCGCC	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	728
PauI	GCGCGC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	5 cut(s)	330, 417, 462, 549, 611
PkrI	GCNGC	4 cut(s)	275, 419, 623, 640
Ple19I	CGATCG	1 cut(s)	702
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
Ppu21I	YACGTR	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	6 cut(s)	185, 195, 217, 252, 406, 487
PspXI	VCTCGAGB	1 cut(s)	722
PteI	GCGCGC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	4 cut(s)	274, 418, 622, 639
Sau3AI	GATC	4 cut(s)	93, 189, 393, 699
Sau96I	GGNCC	6 cut(s)	185, 195, 217, 252, 406, 487
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	221, 681
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	3 cut(s)	21, 54, 285
Sfr274I	CTCGAG	1 cut(s)	722
SfuI	TTCGAA	1 cut(s)	577
SgsI	GGCGCGCC	1 cut(s)	224
SinI	GGWCC	3 cut(s)	252, 406, 487
SlaI	CTCGAG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	2 cut(s)	136, 573
SsiI	CCGC	8 cut(s)	22, 160, 215, 281, 399, 432, 621, 639
SspMI	CTAG	2 cut(s)	353, 375
StyD4I	CCNGG	2 cut(s)	219, 679
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	2 cut(s)	130, 336
TaqI	TCGA	7 cut(s)	111, 207, 411, 543, 577, 702, 723
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	2 cut(s)	136, 573
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	2 cut(s)	624, 641
TseFI	GTSAC	3 cut(s)	334, 460, 527
TseI	GCWGC	2 cut(s)	273, 417
Tsp45I	GTSAC	3 cut(s)	334, 460, 527
TspDTI	ATGAA	3 cut(s)	64, 277, 585
TspGWI	ACGGA	2 cut(s)	581, 659
VpaK11BI	GGWCC	3 cut(s)	252, 406, 487
XapI	RAATTY	2 cut(s)	136, 573
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	1 cut(s)	679
XhoI	CTCGAG	1 cut(s)	722
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	2 cut(s)	353, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.