RchiOBHm_Chr5g0077121

Cytochrome c-type biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012321
Physical Location & Seq
Forward (+)
82952558 .. 82953893
1336 bp
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UTR
Exon/CDS
Intron
PRQ35172

Sequence Viewer

Length: 843 bp
ATGGCCACGCGCCTCGCCCTCCGCCTCAAATCCCATCTCCTCCGCCGCACAACCGCCGCCCCCTCTTCCCTCATCCACCTCCGCCCCTACACCAAATCTCCGCCGTCGATCTTCTCCGCACTCTCCCAACTCCCCCATCCACAGCCACAGCGACAGCCGACGAATCTCCGATCCTTCACTCTCCGCTTCCTCTCCACCTCCTCCCGCCGCGGCCCGACTCGGCCCAAGCCCGTCGACATCGGGGCCCGGGCCCGCCAGCTCCAGACCCGCCGCCTCTGGACCTACGCCCTCACCTTCAGCTGCATCGCCGGCTTCATCGTCATCGTCCTCAACAGCTTCCAGGACCAACTCGTCTTCTACGTCACCCCCACCGACGCCCTCGAGAAGTACGCCACAAACCCTAGCAAGAGCAAGTTCCGCCTCGGCGGCCTCGTCCTCGAAGGCAGCGTCGTCCAGCCGGCGTCCTCGCCGGAGATGGAGTTCGTCATCACCGATCTCATGACCGATATCCTGGTCCGCTACAAGGGCTCCTTGCCGGATTTGTTCCGGGAGGGCCACTCCGTCGTGGTGGAGGGGTTTGTCAAGCCTTTTACCGACGAAGTCCGCAAGGAAGTGTCGACGAAAAGCGTCTCCGGGAAGGCCAGGACGGGAGAGTGTTATTTTTCGGCCACTGAGGTTCTGGCAAAGCACGATGAGAAGTATATGCCGGGGGAAGTTGCGGCGGCGCTCGAGAAGAACAAGAAGAAGCTTGCGGAGGAGGCGAAGGCAGGCGGTGAAGGTGGAGCACATTTGGAGAACAATGCCGGTGGTGAAGCTGATGGAGCACTAGTTAAGAGCTCTTAG

Protein Analysis

280

Amino Acids

30.75

Weight (kDa)

9.74

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmE PF03100 118 - 236 3e-27 CcmE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
AccI GTMKAC 2 cut(s) 234, 617
AccII CGCG 2 cut(s) 10, 210
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 2 cut(s) 3, 666
AcuI CTGAAG 1 cut(s) 280
AcyI GRCGYC 2 cut(s) 375, 461
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 523
AhlI ACTAGT 1 cut(s) 826
AjnI CCWGG 3 cut(s) 339, 510, 641
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 6 cut(s) 259, 300, 336, 748, 815, 837
AluI AGCT 6 cut(s) 259, 300, 336, 748, 815, 837
Alw21I GWGCWC 3 cut(s) 787, 826, 839
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 3 cut(s) 246, 380, 728
AoxI GGCC 9 cut(s) 3, 211, 221, 243, 249, 427, 553, 639, 666
ApaI GGGCCC 2 cut(s) 247, 253
ApeKI GCWGC 2 cut(s) 300, 444
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
AspLEI GCGC 2 cut(s) 12, 727
AsuC2I CCSGG 5 cut(s) 247, 248, 548, 634, 708
AsuHPI GGTGA 5 cut(s) 283, 355, 481, 785, 821
AvaI CYCGRG 3 cut(s) 246, 380, 728
AvaII GGWCC 3 cut(s) 279, 343, 514
BaeGI GKGCMC 2 cut(s) 247, 253
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 4 cut(s) 247, 253, 530, 839
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 3 cut(s) 787, 826, 839
BbvI GCAGC 2 cut(s) 287, 456
BccI CCATC 4 cut(s) 42, 144, 469, 812
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 3 cut(s) 341, 512, 643
BcnI CCSGG 5 cut(s) 247, 248, 548, 634, 708
BcoDI GTCTC 1 cut(s) 634
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 2 cut(s) 402, 827
BfoI RGCGCY 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 426
Bme1390I CCNGG 8 cut(s) 247, 248, 341, 512, 548, 634, 643, 708
Bme18I GGWCC 3 cut(s) 279, 343, 514
BmeT110I CYCGRG 3 cut(s) 246, 380, 728
BmiI GGNNCC 4 cut(s) 244, 245, 251, 529
BmrFI CCNGG 8 cut(s) 247, 248, 341, 512, 548, 634, 643, 708
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 346
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 1 cut(s) 245
BpuMI CCSGG 5 cut(s) 247, 248, 548, 634, 708
BsaHI GRCGYC 2 cut(s) 375, 461
BsaJI CCNNGG 4 cut(s) 208, 246, 421, 707
BsaXI ACNNNNNCTCC 8 cut(s) 82, 112, 464, 494, 512, 542, 813, 843
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse118I RCCGGY 3 cut(s) 308, 457, 803
BseBI CCWGG 3 cut(s) 341, 512, 643
BseDI CCNNGG 4 cut(s) 208, 246, 421, 707
BseGI GGATG 2 cut(s) 72, 136
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 663
BseRI GAGGAG 3 cut(s) 29, 190, 770
BseSI GKGCMC 2 cut(s) 247, 253
BseXI GCAGC 2 cut(s) 287, 456
Bsh1236I CGCG 2 cut(s) 10, 210
BshFI GGCC 9 cut(s) 5, 213, 223, 245, 251, 429, 555, 641, 668
BsiHKAI GWGCWC 3 cut(s) 787, 826, 839
BsiHKCI CYCGRG 3 cut(s) 246, 380, 728
BsiSI CCGG 9 cut(s) 247, 309, 458, 470, 536, 547, 633, 707, 804
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 634
BsmBI CGTCTC 1 cut(s) 634
BsnI GGCC 9 cut(s) 5, 213, 223, 245, 251, 429, 555, 641, 668
BsoBI CYCGRG 3 cut(s) 246, 380, 728
Bsp120I GGGCCC 2 cut(s) 243, 249
Bsp1286I GDGCHC 6 cut(s) 247, 253, 530, 787, 826, 839
Bsp143I GATC 3 cut(s) 108, 170, 493
BspANI GGCC 9 cut(s) 5, 213, 223, 245, 251, 429, 555, 641, 668
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 2 cut(s) 10, 210
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 4 cut(s) 244, 245, 251, 529
BspPI GGATC 1 cut(s) 165
BsrFI RCCGGY 3 cut(s) 308, 457, 803
BssAI RCCGGY 3 cut(s) 308, 457, 803
BssECI CCNNGG 4 cut(s) 208, 246, 421, 707
BssMI GATC 3 cut(s) 108, 170, 493
BssNI GRCGYC 2 cut(s) 375, 461
Bst2UI CCWGG 3 cut(s) 341, 512, 643
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 2 cut(s) 375, 461
BstC8I GCNNGC 6 cut(s) 253, 257, 310, 459, 750, 769
BstDEI CTNAG 2 cut(s) 672, 840
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 72, 136
BstFNI CGCG 2 cut(s) 10, 210
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 12, 727
BstKTI GATC 3 cut(s) 111, 173, 496
BstMAI GTCTC 1 cut(s) 634
BstMBI GATC 3 cut(s) 108, 170, 493
BstMWI GCNNNNNNNGC 6 cut(s) 309, 417, 426, 525, 758, 821
BstNI CCWGG 3 cut(s) 341, 512, 643
BstSCI CCNGG 8 cut(s) 245, 246, 339, 510, 546, 632, 641, 706
BstSLI GKGCMC 2 cut(s) 247, 253
BstUI CGCG 2 cut(s) 10, 210
BstV1I GCAGC 2 cut(s) 287, 456
BstV2I GAAGAC 1 cut(s) 346
BsuRI GGCC 9 cut(s) 5, 213, 223, 245, 251, 429, 555, 641, 668
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 72, 136
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 6 cut(s) 253, 257, 310, 459, 750, 769
CciI TCATGA 1 cut(s) 498
CfoI GCGC 2 cut(s) 12, 727
Cfr10I RCCGGY 3 cut(s) 308, 457, 803
Cfr42I CCGCGG 1 cut(s) 211
Cfr9I CCCGGG 1 cut(s) 246
CseI GACGC 4 cut(s) 383, 436, 450, 616
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 1 cut(s) 499
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 672, 840
DpnI GATC 3 cut(s) 110, 172, 495
DpnII GATC 3 cut(s) 108, 170, 493
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 2 cut(s) 3, 666
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 5 cut(s) 11, 32, 71, 90, 407
Ecl136II GAGCTC 1 cut(s) 837
Eco24I GRGCYC 4 cut(s) 247, 253, 530, 839
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 3 cut(s) 279, 343, 514
Eco53kI GAGCTC 1 cut(s) 837
Eco57I CTGAAG 1 cut(s) 280
Eco88I CYCGRG 3 cut(s) 246, 380, 728
EcoICRI GAGCTC 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 243
EcoRII CCWGG 3 cut(s) 339, 510, 641
EcoRV GATATC 1 cut(s) 508
EcoT38I GRGCYC 4 cut(s) 247, 253, 530, 839
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 1 cut(s) 502
FaiI YATR 3 cut(s) 500, 702, 704
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 1 cut(s) 498
FauI CCCGC 3 cut(s) 212, 260, 275
FblI GTMKAC 2 cut(s) 234, 617
FokI GGATG 2 cut(s) 59, 123
FriOI GRGCYC 4 cut(s) 247, 253, 530, 839
FspBI CTAG 2 cut(s) 402, 827
GlaI GCGC 2 cut(s) 11, 726
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 9 cut(s) 5, 213, 223, 245, 251, 429, 555, 641, 668
HapII CCGG 9 cut(s) 247, 309, 458, 470, 536, 547, 633, 707, 804
HgaI GACGC 4 cut(s) 383, 436, 450, 616
HhaI GCGC 2 cut(s) 12, 727
Hin1I GRCGYC 2 cut(s) 375, 461
Hin1II CATG 1 cut(s) 502
Hin6I GCGC 2 cut(s) 10, 725
HinP1I GCGC 2 cut(s) 10, 725
HincII GTYRAC 2 cut(s) 235, 618
HindII GTYRAC 2 cut(s) 235, 618
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 2 cut(s) 163, 217
HpaII CCGG 9 cut(s) 247, 309, 458, 470, 536, 547, 633, 707, 804
HphI GGTGA 5 cut(s) 283, 355, 481, 785, 821
Hpy166II GTNNAC 2 cut(s) 235, 618
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 5 cut(s) 262, 277, 382, 499, 730
Hpy8I GTNNAC 2 cut(s) 235, 618
Hpy99I CGWCG 8 cut(s) 109, 163, 236, 377, 452, 566, 599, 622
HpyAV CCTTC 6 cut(s) 184, 304, 434, 631, 757, 770
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 6 cut(s) 309, 417, 426, 525, 758, 821
HpyF3I CTNAG 2 cut(s) 672, 840
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 2 cut(s) 375, 461
Hsp92II CATG 1 cut(s) 502
HspAI GCGC 2 cut(s) 10, 725
KroI GCCGGC 2 cut(s) 308, 457
KroNI GCCGGC 2 cut(s) 310, 459
KspI CCGCGG 1 cut(s) 211
Kzo9I GATC 3 cut(s) 108, 170, 493
LmnI GCTCC 4 cut(s) 264, 533, 782, 821
Lsp1109I GCAGC 2 cut(s) 287, 456
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 402, 827
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 361
MalI GATC 3 cut(s) 110, 172, 495
MboI GATC 3 cut(s) 108, 170, 493
MboII GAAGA 5 cut(s) 57, 103, 346, 745, 754
MhlI GDGCHC 6 cut(s) 247, 253, 530, 787, 826, 839
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 211
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 2 cut(s) 308, 457
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 831
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 210, 300
MspI CCGG 9 cut(s) 247, 309, 458, 470, 536, 547, 633, 707, 804
MspR9I CCNGG 8 cut(s) 247, 248, 341, 512, 548, 634, 643, 708
MvaI CCWGG 3 cut(s) 341, 512, 643
MvnI CGCG 2 cut(s) 10, 210
MwoI GCNNNNNNNGC 6 cut(s) 309, 417, 426, 525, 758, 821
NaeI GCCGGC 2 cut(s) 310, 459
NciI CCSGG 5 cut(s) 247, 248, 548, 634, 708
NdeII GATC 3 cut(s) 108, 170, 493
NgoMIV GCCGGC 2 cut(s) 308, 457
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 4 cut(s) 244, 245, 251, 529
NmeAIII GCCGAG 2 cut(s) 199, 402
NmuCI GTSAC 1 cut(s) 361
PaeR7I CTCGAG 2 cut(s) 380, 728
PagI TCATGA 1 cut(s) 498
PcsI WCGNNNNNNNCGW 4 cut(s) 357, 429, 444, 489
PdiI GCCGGC 2 cut(s) 310, 459
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 599
PfoI TCCNGGA 3 cut(s) 339, 546, 632
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 839
Psp6I CCWGG 3 cut(s) 339, 510, 641
PspGI CCWGG 3 cut(s) 339, 510, 641
PspN4I GGNNCC 4 cut(s) 244, 245, 251, 529
PspOMI GGGCCC 2 cut(s) 243, 249
PsyI GACNNNGTC 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SacI GAGCTC 1 cut(s) 839
SacII CCGCGG 1 cut(s) 211
SalI GTCGAC 2 cut(s) 233, 616
SaqAI TTAA 1 cut(s) 831
Sau3AI GATC 3 cut(s) 108, 170, 493
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 8 cut(s) 247, 248, 341, 512, 548, 634, 643, 708
SduI GDGCHC 6 cut(s) 247, 253, 530, 787, 826, 839
SfaNI GCATC 1 cut(s) 312
Sfr274I CTCGAG 2 cut(s) 380, 728
Sfr303I CCGCGG 1 cut(s) 211
SgrBI CCGCGG 1 cut(s) 211
SinI GGWCC 3 cut(s) 279, 343, 514
SlaI CTCGAG 2 cut(s) 380, 728
SmaI CCCGGG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 380, 728
SmoI CTYRAG 2 cut(s) 380, 728
SpeI ACTAGT 1 cut(s) 826
SrfI GCCCGGGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 402, 827
SstI GAGCTC 1 cut(s) 839
StyD4I CCNGG 8 cut(s) 245, 246, 339, 510, 546, 632, 641, 706
TaiI ACGT 1 cut(s) 363
TaqI TCGA 6 cut(s) 107, 234, 381, 438, 617, 729
TaqII GACCGA 1 cut(s) 518
TauI GCSGC 8 cut(s) 48, 59, 210, 213, 273, 429, 722, 725
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 300, 444
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 550
TspMI CCCGGG 1 cut(s) 246
TspRI CASTG 1 cut(s) 676
Tth111I GACNNNGTC 1 cut(s) 599
VpaK11BI GGWCC 3 cut(s) 279, 343, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XhoI CTCGAG 2 cut(s) 380, 728
XmaI CCCGGG 1 cut(s) 246
XmiI GTMKAC 2 cut(s) 234, 617
XspI CTAG 2 cut(s) 402, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.