Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012321

Physical Location & Seq

Genomic Coordinates Forward (+)

35975717 .. 35977373

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCACGCGCCTCGCTCTCCGCCTCAAATCCCACCTCCTCCGCCGCGCAACCGCTCTCCCCTCTTCCCTCCTCCACCGCCGTCCCTACACCAAATCCTCGCCGTTGATCTTCTCCTCACTCTCTCATGCCCATCCACAGCCGCTCCCGCTTCCTCTCCGATCCTTCACGCTCCGCTTCCTCTCCACCGCCTCCCGCCGCGGCCCGGCCCGGCCCAAGCCCGTCGACATCGGGGCCCGGGCCCGCCAGCTCCAGGCCCGCCGCCTCTGGACCTACGCCCTCACCTTCAGCTGCATCGCCGGCTTCATCGTCATCGTCCTCAACAGCTTCCAGGACCAGCTCGTCTTCTACGTCACCCCCACCGACGCGCTCGAAAAGTACGCCACAAACCCTAGCAAGAGCAAGTTCCGCCTCGGCGGCCTCGTCCTCGAAGGCAGCGTCGTCCAGCCGGCCTCGTCGCCGGAGATGGAGTTCGTCATCACCGATCTGATGACCGATATCCTGGTCCGGTACAAAGGCTCGTTGCCGGATTTGTTCCGGGAGGGGCACTCCGTCGTGGTGGAGGGGTTTGTGAAGCCTTTTACCGACGAAATTCGCAGGGAGGTGTCGACGAAAAGCGTCTCCGGGAAGGCCAGGACGGGAGATTGTTATTTTTCGGCGACTGAGGTTTTGGCCAAGCACGATGAGAAGTATATGCCCGGGGAAGTTGCGGCGGCTCTCGAGAAGAATAAGAAGAAGCTTGCGGAGGAGGCAAAGGCCGGTGGTGAAGGTGGAGCAGAATCGGAGACCAATGCCGGTGGTGGAGCACTAGTTAAGAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

275

Amino Acids

29.99

Weight (kDa)

9.83

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmE	PF03100	115 - 233	2.1e-27	CcmE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51790
fragaria_vesca	FvH4_3g43060
malus_domestica	MD03G1024200.v1.1 MD11G1029300.v1.1
prunus_persica	Prupe.6G023600_v2.0.a1 Prupe.6G023600_v2.0.a1
pyrus_communis	pycom11g02280
rosa_chinensis	RchiOBHm_Chr5g0077121
rosa_laevigata	RLG00000036667
rosa_multiflora	Rmu_sc0009061.1_g000004 Rmu_sc0009061.1_g000005 Rmu_sc0010146.1_g000001 Rmu_sc0021865.1_g000001 Rmu_sc0021865.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004970
rosa_rugosa	Rorug05G0452000
rosa_samantha	Rh5CG552300 Rh5DG540300
rosa_wichuraiana	Rw5G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccBSI	CCGCTC	2 cut(s)	56, 145
AccI	GTMKAC	2 cut(s)	225, 608
AccII	CGCG	4 cut(s)	10, 48, 201, 368
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	3, 672
AcsI	RAATTY	1 cut(s)	591
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	2 cut(s)	380, 512
AfiI	CCNNNNNNNGG	2 cut(s)	205, 253
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	4 cut(s)	252, 330, 501, 632
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	6 cut(s)	250, 291, 327, 340, 739, 819
AluI	AGCT	6 cut(s)	250, 291, 327, 340, 739, 819
Alw21I	GWGCWC	2 cut(s)	808, 821
Alw26I	GTCTC	2 cut(s)	625, 779
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	3 cut(s)	237, 698, 719
ApaI	GGGCCC	2 cut(s)	238, 244
ApeKI	GCWGC	2 cut(s)	291, 435
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	4 cut(s)	423, 455, 652, 684
AspLEI	GCGC	3 cut(s)	12, 50, 370
AsuC2I	CCSGG	8 cut(s)	206, 211, 238, 239, 539, 625, 699, 700
AsuHPI	GGTGA	4 cut(s)	274, 346, 472, 776
AvaI	CYCGRG	3 cut(s)	237, 698, 719
AvaII	GGWCC	3 cut(s)	270, 334, 505
BaeGI	GKGCMC	3 cut(s)	238, 244, 549
BalI	TGGCCA	2 cut(s)	5, 674
BanII	GRGCYC	3 cut(s)	238, 244, 821
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	2 cut(s)	808, 821
BbvI	GCAGC	2 cut(s)	278, 447
BccI	CCATC	2 cut(s)	141, 460
BceAI	ACGGC	2 cut(s)	66, 88
BciT130I	CCWGG	4 cut(s)	254, 332, 503, 634
BcnI	CCSGG	8 cut(s)	206, 211, 238, 239, 539, 625, 699, 700
BcoDI	GTCTC	2 cut(s)	625, 779
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	2 cut(s)	393, 809
BglI	GCCNNNNNGGC	1 cut(s)	417
Bme18I	GGWCC	3 cut(s)	270, 334, 505
BmeT110I	CYCGRG	3 cut(s)	237, 698, 719
BmiI	GGNNCC	3 cut(s)	235, 236, 242
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	1 cut(s)	236
BpuMI	CCSGG	8 cut(s)	206, 211, 238, 239, 539, 625, 699, 700
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	5 cut(s)	199, 237, 412, 698, 699
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	6 cut(s)	129, 159, 455, 485, 795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 253
Bse118I	RCCGGY	4 cut(s)	299, 448, 758, 794
BseBI	CCWGG	4 cut(s)	254, 332, 503, 634
BseDI	CCNNGG	5 cut(s)	199, 237, 412, 698, 699
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	205, 253
BseMII	CTCAG	1 cut(s)	654
BseRI	GAGGAG	4 cut(s)	29, 62, 106, 761
BseSI	GKGCMC	3 cut(s)	238, 244, 549
BseXI	GCAGC	2 cut(s)	278, 447
Bsh1236I	CGCG	4 cut(s)	10, 48, 201, 368
BsiHKAI	GWGCWC	2 cut(s)	808, 821
BsiHKCI	CYCGRG	3 cut(s)	237, 698, 719
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	205, 253
BsmAI	GTCTC	2 cut(s)	625, 779
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	3 cut(s)	237, 698, 719
Bsp120I	GGGCCC	2 cut(s)	234, 240
Bsp1286I	GDGCHC	5 cut(s)	238, 244, 549, 808, 821
Bsp143I	GATC	3 cut(s)	108, 161, 484
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	4 cut(s)	10, 48, 201, 368
BspLI	GGNNCC	3 cut(s)	235, 236, 242
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	779
BsrBI	CCGCTC	2 cut(s)	56, 145
BsrFI	RCCGGY	4 cut(s)	299, 448, 758, 794
BssAI	RCCGGY	4 cut(s)	299, 448, 758, 794
BssECI	CCNNGG	5 cut(s)	199, 237, 412, 698, 699
BssMI	GATC	3 cut(s)	108, 161, 484
Bst2UI	CCWGG	4 cut(s)	254, 332, 503, 634
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	6 cut(s)	244, 248, 259, 301, 450, 741
BstDEI	CTNAG	2 cut(s)	663, 822
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	4 cut(s)	10, 48, 201, 368
BstHHI	GCGC	3 cut(s)	12, 50, 370
BstKTI	GATC	3 cut(s)	111, 164, 487
BstMAI	GTCTC	2 cut(s)	625, 779
BstMBI	GATC	3 cut(s)	108, 161, 484
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 300, 408, 417, 749
BstNI	CCWGG	4 cut(s)	254, 332, 503, 634
BstSLI	GKGCMC	3 cut(s)	238, 244, 549
BstUI	CGCG	4 cut(s)	10, 48, 201, 368
BstV1I	GCAGC	2 cut(s)	278, 447
BstV2I	GAAGAC	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	6 cut(s)	244, 248, 259, 301, 450, 741
CfoI	GCGC	3 cut(s)	12, 50, 370
Cfr10I	RCCGGY	4 cut(s)	299, 448, 758, 794
Cfr42I	CCGCGG	1 cut(s)	202
Cfr9I	CCCGGG	2 cut(s)	237, 698
CseI	GACGC	3 cut(s)	374, 427, 607
Csp6I	GTAC	2 cut(s)	379, 511
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	1 cut(s)	128
CviQI	GTAC	2 cut(s)	379, 511
DdeI	CTNAG	2 cut(s)	663, 822
DpnI	GATC	3 cut(s)	110, 163, 486
DpnII	GATC	3 cut(s)	108, 161, 484
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	3, 672
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	3 cut(s)	11, 32, 398
Ecl136II	GAGCTC	1 cut(s)	819
Eco24I	GRGCYC	3 cut(s)	238, 244, 821
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	3 cut(s)	270, 334, 505
Eco53kI	GAGCTC	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	271
Eco88I	CYCGRG	3 cut(s)	237, 698, 719
EcoICRI	GAGCTC	1 cut(s)	819
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	4 cut(s)	252, 330, 501, 632
EcoRV	GATATC	1 cut(s)	499
EcoT38I	GRGCYC	3 cut(s)	238, 244, 821
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	129, 693, 695
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	127
FauI	CCCGC	4 cut(s)	156, 203, 251, 266
FblI	GTMKAC	2 cut(s)	225, 608
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	3 cut(s)	238, 244, 821
FspBI	CTAG	2 cut(s)	393, 809
GlaI	GCGC	3 cut(s)	11, 49, 369
GsuI	CTGGAG	1 cut(s)	236
HgaI	GACGC	3 cut(s)	374, 427, 607
HhaI	GCGC	3 cut(s)	12, 50, 370
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	3 cut(s)	10, 48, 368
HinP1I	GCGC	3 cut(s)	10, 48, 368
HincII	GTYRAC	2 cut(s)	226, 609
HindII	GTYRAC	2 cut(s)	226, 609
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	1 cut(s)	779
HphI	GGTGA	4 cut(s)	274, 346, 472, 776
Hpy166II	GTNNAC	2 cut(s)	226, 609
Hpy188I	TCNGA	3 cut(s)	161, 489, 784
Hpy188III	TCNNGA	3 cut(s)	268, 719, 721
Hpy8I	GTNNAC	2 cut(s)	226, 609
Hpy99I	CGWCG	7 cut(s)	227, 368, 443, 460, 557, 590, 613
HpyAV	CCTTC	5 cut(s)	175, 295, 425, 622, 761
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 300, 408, 417, 749
HpyF3I	CTNAG	2 cut(s)	663, 822
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	3 cut(s)	10, 48, 368
KroI	GCCGGC	2 cut(s)	299, 448
KroNI	GCCGGC	2 cut(s)	301, 450
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	108, 161, 484
LmnI	GCTCC	5 cut(s)	150, 177, 255, 773, 803
Lsp1109I	GCAGC	2 cut(s)	278, 447
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	393, 809
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	3 cut(s)	110, 163, 486
MbiI	CCGCTC	2 cut(s)	56, 145
MboI	GATC	3 cut(s)	108, 161, 484
MboII	GAAGA	5 cut(s)	57, 103, 337, 736, 745
MhlI	GDGCHC	5 cut(s)	238, 244, 549, 808, 821
MlsI	TGGCCA	2 cut(s)	5, 674
MluCI	AATT	1 cut(s)	591
MluNI	TGGCCA	2 cut(s)	5, 674
Mox20I	TGGCCA	2 cut(s)	5, 674
MroNI	GCCGGC	2 cut(s)	299, 448
MscI	TGGCCA	2 cut(s)	5, 674
MseI	TTAA	1 cut(s)	813
Msp20I	TGGCCA	2 cut(s)	5, 674
MspA1I	CMGCKG	2 cut(s)	201, 291
MvaI	CCWGG	4 cut(s)	254, 332, 503, 634
MvnI	CGCG	4 cut(s)	10, 48, 201, 368
MwoI	GCNNNNNNNGC	5 cut(s)	148, 300, 408, 417, 749
NaeI	GCCGGC	2 cut(s)	301, 450
NciI	CCSGG	8 cut(s)	206, 211, 238, 239, 539, 625, 699, 700
NdeII	GATC	3 cut(s)	108, 161, 484
NgoMIV	GCCGGC	2 cut(s)	299, 448
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	3 cut(s)	235, 236, 242
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	4 cut(s)	348, 420, 435, 480
PdiI	GCCGGC	2 cut(s)	301, 450
PfeI	GAWTC	1 cut(s)	779
PfoI	TCCNGGA	3 cut(s)	330, 537, 623
Psp124BI	GAGCTC	1 cut(s)	821
Psp6I	CCWGG	4 cut(s)	252, 330, 501, 632
PspGI	CCWGG	4 cut(s)	252, 330, 501, 632
PspN4I	GGNNCC	3 cut(s)	235, 236, 242
PspOMI	GGGCCC	2 cut(s)	234, 240
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	380, 512
RsaNI	GTAC	2 cut(s)	379, 511
SacI	GAGCTC	1 cut(s)	821
SacII	CCGCGG	1 cut(s)	202
SalI	GTCGAC	2 cut(s)	224, 607
SaqAI	TTAA	1 cut(s)	813
Sau3AI	GATC	3 cut(s)	108, 161, 484
SduI	GDGCHC	5 cut(s)	238, 244, 549, 808, 821
SfaNI	GCATC	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	719
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	3 cut(s)	270, 334, 505
SlaI	CTCGAG	1 cut(s)	719
SmaI	CCCGGG	2 cut(s)	239, 700
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SpeI	ACTAGT	1 cut(s)	808
SrfI	GCCCGGGC	1 cut(s)	239
Sse9I	AATT	1 cut(s)	591
SspMI	CTAG	2 cut(s)	393, 809
SstI	GAGCTC	1 cut(s)	821
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	5 cut(s)	225, 372, 429, 608, 720
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	1 cut(s)	591
TauI	GCSGC	8 cut(s)	48, 145, 201, 204, 264, 420, 713, 716
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	291, 435
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	541
TspMI	CCCGGG	2 cut(s)	237, 698
VpaK11BI	GGWCC	3 cut(s)	270, 334, 505
XapI	RAATTY	1 cut(s)	591
XhoI	CTCGAG	1 cut(s)	719
XmaI	CCCGGG	2 cut(s)	237, 698
XmiI	GTMKAC	2 cut(s)	225, 608
XspI	CTAG	2 cut(s)	393, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.