Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012321

Physical Location & Seq

Genomic Coordinates Forward (+)

76896183 .. 76897013

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG552300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCCACGCGCCTCGCCCTCCGCCTCAAATCCCACCTCCTCCGCCGCACAACCGCCGCCCCCTCTTCCCTCATCCTCCTCCGCCCCTACACCAAATCTCCGCCGTCGATCTTCTCCTCACTCTCCCAACTCCCCCATCCACAGCCGAGTAATCTCCGATCCTTCACTCTCCGCTTCCTCTCCACCTCCTCCCGCCGCGGCCCGACCCGGCCCAAGCCCGTCGACATCGGGGCCCGGGCCCGCCAGCTCCAGACCCGCCGCCTCTGGACCTACGCCCTCACCTTCAGCTGCATCGCCGGCTTCATCGTCATCGTCCTCAACAGCTTCCAGGACCAACTCGTCTTCTACGTCACGCCCACCGACGCCCTCGAGAAGTACGCCACAAACCCTAGCAAGAGCAAGTTCCGCCTCGGCGGCCTCGTCCTCGAAGGCAGCGTCGTCCAGCCGGCGTCCTCGCCGGAGATGGAGTTCGTCATCACCGATCTCATGACCGATATCCTGGTCCGCTACAAGGGCTCCTTGCCGGATTTGTTCCGGGAGGGCCACTCCGTCGTGGTGGAGGGGTTCGTCAAGCCTTTTACCGACGAAGTCCGCAAGGTAGTGTCGACGAAAAGCGTCTCCGGGAAGGCCAGGACCGGCGAGTGTTATTTTTCGGCCACTGAGGTTCTGGCAAAGCACGATGAGAAGTATATGCCGGGGGAAGTTGCGGCGGCGCTCGAGAAGAACAAGAAGAAGCTTGCGGAGGAGGCGAAGGCCGGCGGTGAAGGTGGAGCACATTTGGAGAACAATGGCGGTGGTGAAGCTGATGGAGCACTAGTTAAGAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0017003 GO:0017004 GO:0017006 GO:0018063 GO:0019538 GO:0019866 GO:0020037 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmE

Protein Analysis

276

Amino Acids

30.17

Weight (kDa)

9.74

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmE	PF03100	114 - 232	2.8e-27	CcmE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51790
fragaria_vesca	FvH4_3g43060
malus_domestica	MD03G1024200.v1.1 MD11G1029300.v1.1
prunus_persica	Prupe.6G023600_v2.0.a1 Prupe.6G023600_v2.0.a1
pyrus_communis	pycom11g02280
rosa_chinensis	RchiOBHm_Chr5g0077121
rosa_laevigata	RLG00000036667
rosa_multiflora	Rmu_sc0009061.1_g000004 Rmu_sc0009061.1_g000005 Rmu_sc0010146.1_g000001 Rmu_sc0021865.1_g000001 Rmu_sc0021865.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004970
rosa_rugosa	Rorug05G0452000
rosa_samantha	Rh5CG552300 Rh5DG540300
rosa_wichuraiana	Rw5G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccI	GTMKAC	2 cut(s)	222, 605
AccII	CGCG	2 cut(s)	10, 198
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	3, 654
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	2 cut(s)	363, 449
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	511
AhlI	ACTAGT	1 cut(s)	814
AjnI	CCWGG	3 cut(s)	327, 498, 629
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	6 cut(s)	247, 288, 324, 736, 803, 825
AluI	AGCT	6 cut(s)	247, 288, 324, 736, 803, 825
Alw21I	GWGCWC	3 cut(s)	775, 814, 827
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	3 cut(s)	234, 368, 716
ApaI	GGGCCC	2 cut(s)	235, 241
ApeKI	GCWGC	2 cut(s)	288, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspLEI	GCGC	2 cut(s)	12, 715
AsuC2I	CCSGG	6 cut(s)	208, 235, 236, 536, 622, 696
AsuHPI	GGTGA	4 cut(s)	271, 469, 773, 809
AvaI	CYCGRG	3 cut(s)	234, 368, 716
AvaII	GGWCC	4 cut(s)	267, 331, 502, 633
BaeGI	GKGCMC	2 cut(s)	235, 241
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	4 cut(s)	235, 241, 518, 827
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	3 cut(s)	775, 814, 827
BbvI	GCAGC	2 cut(s)	275, 444
BccI	CCATC	3 cut(s)	144, 457, 800
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	3 cut(s)	329, 500, 631
BcnI	CCSGG	6 cut(s)	208, 235, 236, 536, 622, 696
BcoDI	GTCTC	1 cut(s)	622
BcuI	ACTAGT	1 cut(s)	814
BfaI	CTAG	2 cut(s)	390, 815
BfoI	RGCGCY	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	414
Bme1390I	CCNGG	9 cut(s)	208, 235, 236, 329, 500, 536, 622, 631, 696
Bme18I	GGWCC	4 cut(s)	267, 331, 502, 633
BmeT110I	CYCGRG	3 cut(s)	234, 368, 716
BmiI	GGNNCC	4 cut(s)	232, 233, 239, 517
BmrFI	CCNGG	9 cut(s)	208, 235, 236, 329, 500, 536, 622, 631, 696
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	6 cut(s)	208, 235, 236, 536, 622, 696
BsaHI	GRCGYC	2 cut(s)	363, 449
BsaJI	CCNNGG	4 cut(s)	196, 234, 409, 695
BsaXI	ACNNNNNCTCC	8 cut(s)	82, 112, 452, 482, 500, 530, 801, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse118I	RCCGGY	4 cut(s)	296, 445, 635, 755
BseBI	CCWGG	3 cut(s)	329, 500, 631
BseDI	CCNNGG	4 cut(s)	196, 234, 409, 695
BseGI	GGATG	2 cut(s)	72, 136
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	651
BseRI	GAGGAG	5 cut(s)	29, 68, 106, 178, 758
BseSI	GKGCMC	2 cut(s)	235, 241
BseXI	GCAGC	2 cut(s)	275, 444
Bsh1236I	CGCG	2 cut(s)	10, 198
BsiHKAI	GWGCWC	3 cut(s)	775, 814, 827
BsiHKCI	CYCGRG	3 cut(s)	234, 368, 716
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	622
BsmBI	CGTCTC	1 cut(s)	622
BsoBI	CYCGRG	3 cut(s)	234, 368, 716
Bsp120I	GGGCCC	2 cut(s)	231, 237
Bsp1286I	GDGCHC	6 cut(s)	235, 241, 518, 775, 814, 827
Bsp143I	GATC	3 cut(s)	108, 158, 481
BspCNI	CTCAG	1 cut(s)	652
BspFNI	CGCG	2 cut(s)	10, 198
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	232, 233, 239, 517
BspPI	GGATC	1 cut(s)	153
BsrFI	RCCGGY	4 cut(s)	296, 445, 635, 755
BssAI	RCCGGY	4 cut(s)	296, 445, 635, 755
BssECI	CCNNGG	4 cut(s)	196, 234, 409, 695
BssMI	GATC	3 cut(s)	108, 158, 481
BssNI	GRCGYC	2 cut(s)	363, 449
Bst2UI	CCWGG	3 cut(s)	329, 500, 631
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	2 cut(s)	363, 449
BstC8I	GCNNGC	6 cut(s)	241, 245, 298, 447, 738, 757
BstDEI	CTNAG	2 cut(s)	660, 828
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	72, 136
BstFNI	CGCG	2 cut(s)	10, 198
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	2 cut(s)	12, 715
BstKTI	GATC	3 cut(s)	111, 161, 484
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	3 cut(s)	108, 158, 481
BstMWI	GCNNNNNNNGC	6 cut(s)	297, 405, 414, 513, 746, 809
BstNI	CCWGG	3 cut(s)	329, 500, 631
BstSCI	CCNGG	9 cut(s)	206, 233, 234, 327, 498, 534, 620, 629, 694
BstSLI	GKGCMC	2 cut(s)	235, 241
BstUI	CGCG	2 cut(s)	10, 198
BstV1I	GCAGC	2 cut(s)	275, 444
BstV2I	GAAGAC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	72, 136
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	6 cut(s)	241, 245, 298, 447, 738, 757
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	2 cut(s)	12, 715
Cfr10I	RCCGGY	4 cut(s)	296, 445, 635, 755
Cfr42I	CCGCGG	1 cut(s)	199
Cfr9I	CCCGGG	1 cut(s)	234
CseI	GACGC	4 cut(s)	371, 424, 438, 604
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	1 cut(s)	487
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	660, 828
DpnI	GATC	3 cut(s)	110, 160, 483
DpnII	GATC	3 cut(s)	108, 158, 481
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	2 cut(s)	3, 654
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	5 cut(s)	11, 32, 71, 90, 395
Ecl136II	GAGCTC	1 cut(s)	825
Eco24I	GRGCYC	4 cut(s)	235, 241, 518, 827
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	4 cut(s)	267, 331, 502, 633
Eco53kI	GAGCTC	1 cut(s)	825
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	3 cut(s)	234, 368, 716
EcoICRI	GAGCTC	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	3 cut(s)	327, 498, 629
EcoRV	GATATC	1 cut(s)	496
EcoT38I	GRGCYC	4 cut(s)	235, 241, 518, 827
Esp3I	CGTCTC	1 cut(s)	622
FaeI	CATG	1 cut(s)	490
FaiI	YATR	3 cut(s)	488, 690, 692
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	1 cut(s)	486
FauI	CCCGC	3 cut(s)	200, 248, 263
FblI	GTMKAC	2 cut(s)	222, 605
FokI	GGATG	2 cut(s)	59, 123
FriOI	GRGCYC	4 cut(s)	235, 241, 518, 827
FspBI	CTAG	2 cut(s)	390, 815
GlaI	GCGC	2 cut(s)	11, 714
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	716
HgaI	GACGC	4 cut(s)	371, 424, 438, 604
HhaI	GCGC	2 cut(s)	12, 715
Hin1I	GRCGYC	2 cut(s)	363, 449
Hin1II	CATG	1 cut(s)	490
Hin6I	GCGC	2 cut(s)	10, 713
HinP1I	GCGC	2 cut(s)	10, 713
HincII	GTYRAC	2 cut(s)	223, 606
HindII	GTYRAC	2 cut(s)	223, 606
HindIII	AAGCTT	1 cut(s)	734
HphI	GGTGA	4 cut(s)	271, 469, 773, 809
Hpy166II	GTNNAC	2 cut(s)	223, 606
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	5 cut(s)	250, 265, 370, 487, 718
Hpy8I	GTNNAC	2 cut(s)	223, 606
Hpy99I	CGWCG	7 cut(s)	109, 224, 365, 440, 554, 587, 610
HpyAV	CCTTC	6 cut(s)	172, 292, 422, 619, 745, 758
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	297, 405, 414, 513, 746, 809
HpyF3I	CTNAG	2 cut(s)	660, 828
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	2 cut(s)	363, 449
Hsp92II	CATG	1 cut(s)	490
HspAI	GCGC	2 cut(s)	10, 713
KroI	GCCGGC	3 cut(s)	296, 445, 755
KroNI	GCCGGC	3 cut(s)	298, 447, 757
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	108, 158, 481
LmnI	GCTCC	4 cut(s)	252, 521, 770, 809
Lsp1109I	GCAGC	2 cut(s)	275, 444
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	2 cut(s)	390, 815
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	110, 160, 483
MboI	GATC	3 cut(s)	108, 158, 481
MboII	GAAGA	5 cut(s)	57, 103, 334, 733, 742
MhlI	GDGCHC	6 cut(s)	235, 241, 518, 775, 814, 827
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	3 cut(s)	296, 445, 755
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	819
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	198, 288
MspR9I	CCNGG	9 cut(s)	208, 235, 236, 329, 500, 536, 622, 631, 696
MvaI	CCWGG	3 cut(s)	329, 500, 631
MvnI	CGCG	2 cut(s)	10, 198
MwoI	GCNNNNNNNGC	6 cut(s)	297, 405, 414, 513, 746, 809
NaeI	GCCGGC	3 cut(s)	298, 447, 757
NciI	CCSGG	6 cut(s)	208, 235, 236, 536, 622, 696
NdeII	GATC	3 cut(s)	108, 158, 481
NgoMIV	GCCGGC	3 cut(s)	296, 445, 755
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	4 cut(s)	232, 233, 239, 517
NmeAIII	GCCGAG	2 cut(s)	171, 390
NmuCI	GTSAC	1 cut(s)	349
PaeR7I	CTCGAG	2 cut(s)	368, 716
PagI	TCATGA	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	4 cut(s)	345, 417, 432, 477
PdiI	GCCGGC	3 cut(s)	298, 447, 757
PflFI	GACNNNGTC	1 cut(s)	587
PfoI	TCCNGGA	3 cut(s)	327, 534, 620
Psp124BI	GAGCTC	1 cut(s)	827
Psp6I	CCWGG	3 cut(s)	327, 498, 629
PspGI	CCWGG	3 cut(s)	327, 498, 629
PspN4I	GGNNCC	4 cut(s)	232, 233, 239, 517
PspOMI	GGGCCC	2 cut(s)	231, 237
PsyI	GACNNNGTC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	827
SacII	CCGCGG	1 cut(s)	199
SalI	GTCGAC	2 cut(s)	221, 604
SaqAI	TTAA	1 cut(s)	819
Sau3AI	GATC	3 cut(s)	108, 158, 481
ScrFI	CCNGG	9 cut(s)	208, 235, 236, 329, 500, 536, 622, 631, 696
SduI	GDGCHC	6 cut(s)	235, 241, 518, 775, 814, 827
SfaNI	GCATC	1 cut(s)	300
Sfr274I	CTCGAG	2 cut(s)	368, 716
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	4 cut(s)	267, 331, 502, 633
SlaI	CTCGAG	2 cut(s)	368, 716
SmaI	CCCGGG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	368, 716
SmoI	CTYRAG	2 cut(s)	368, 716
SpeI	ACTAGT	1 cut(s)	814
SrfI	GCCCGGGC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	390, 815
SstI	GAGCTC	1 cut(s)	827
StyD4I	CCNGG	9 cut(s)	206, 233, 234, 327, 498, 534, 620, 629, 694
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	6 cut(s)	107, 222, 369, 426, 605, 717
TaqII	GACCGA	1 cut(s)	506
TauI	GCSGC	8 cut(s)	48, 59, 198, 201, 261, 417, 710, 713
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	2 cut(s)	288, 432
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	538
TspMI	CCCGGG	1 cut(s)	234
TspRI	CASTG	1 cut(s)	664
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	4 cut(s)	267, 331, 502, 633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XhoI	CTCGAG	2 cut(s)	368, 716
XmaI	CCCGGG	1 cut(s)	234
XmiI	GTMKAC	2 cut(s)	222, 605
XspI	CTAG	2 cut(s)	390, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.