Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009899

Physical Location & Seq

Genomic Coordinates Reverse (-)

19210914 .. 19213776

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGTTCGGACGATGAGAGAGACGAGAAGGAGCTGAGTCTTACCTCTCCTGAAGTCGTCACCAAGTACAAGAGCGCCGCTGAGATCGTTAACAAGGCGTTACAGGTTGTTTTAGCTGAATGCAAACCAAAAGCTAAGATTGTTGATATCTGTGAGAAAGGAGACTCTTTTATTAAAGAGCAAACAGCAAGCATGTACAAGAATTCTAAGAAGAAGATTGAGAGAGGTGTTGCGTTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTTTCACCGCTTGCTAGTGATGAGTCTGTGTTGGAAGATGGTGACATGGTTAAAATCGATATGGGATGTCATATTGATGGGTTCATTGCCCTTGTTGGTCACACACATGTTCTTCAAGAAGGGCCTCTTAGTGGGCGTAAGGCTGATGTTATCGCTGCCGCAAATACTGCAGCTGATGTTGCTCTAAGGCTCGTACGTCCTGGAAAAAAGAACACTGATGTAACTGAAGCTATTCAGAAGGTAGCTGCAGCTTATGACTGCAAAATTGTTGAAGGTGTTCTTTCCCACCAGCTGAAACAGCATGTGATAGATGGAAACAAGGTTGTGCTTAGTGTATCCAGCCCTGAAACAACTGTTGACGAAGTGGAATTTGAAGAGAATGAAGTCTATGCAATAGATATTGTGGCAAGTACTGGTGATGGCAAGCCAAAGCTATTAGACGAGAAGCAAACAACTATTTACAAGAAAGATGAAAGTGTTAACTATCAGTTGAAGATGAAGGCCTCCAGATTCATAATCAGCGAAATTAAACAGAACTTCCCCCGTATGCCATTCACTGCAAGGTCACTGGAGGAGAAAAGGGCACGGCTTGGACTTGTGGAGTGTGTGAACCATGGTCATTTGCAACCATATCCTGTTCTTTACGAGAAGCCTGGGGATTTTGTTGCTCAGATTAAGTTCACAGTTTTGCTGATGCCAAATGGATCAGATAGGATCACTTCACATACACTTCAGGAACTTCCTAAAAAGACCATCGAAGACCCTGAGATCAAAGGGTGGTTAGCTTTGGGCATCAAGAAGAAGAAAGGTGGTGGAAAGAAGAAGAAAGCCCAAAAGGCGGGAGAGAAAGGAGAGGCTTCAACAGAGGCTGAGCCAATGGACGCAAGTAGTAATGCTCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

392

Amino Acids

42.98

Weight (kDa)

6.36

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	22 - 224	1e-19	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51800 AT3G51800 AT3G51800
fragaria_vesca	FvH4_6g11120 FvH4_6g11120 FvH4_6g11120
malus_domestica	MD00G1062200.v1.1 MD12G1172200.v1.1
prunus_persica	Prupe.6G280500_v2.0.a1 Prupe.6G280500_v2.0.a1
pyrus_communis	pycom04g14310 pycom12g16340
rosa_chinensis	RchiOBHm_Chr3g0462561
rosa_laevigata	RLG00000024848
rosa_roxburghii	Rroxscaffold_6G00417390
rosa_rugosa	Rorug03G0057600 Rorug03G0057600
rosa_samantha	Rh3AG115600 Rh3CG122500 Rh3DG121200
rosa_wichuraiana	Rw3G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	78, 281, 432, 1112
AclWI	GGATC	2 cut(s)	985, 995
AcsI	RAATTY	2 cut(s)	202, 641
AcuI	CTGAAG	3 cut(s)	72, 519, 989
AfaI	GTAC	4 cut(s)	68, 197, 468, 685
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1111
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	389, 545, 647, 766, 1134
AjnI	CCWGG	2 cut(s)	472, 925
Alw26I	GTCTC	2 cut(s)	15, 156
AlwI	GGATC	2 cut(s)	985, 995
AlwNI	CAGNNNCTG	1 cut(s)	1142
AoxI	GGCC	2 cut(s)	395, 774
ApeKI	GCWGC	4 cut(s)	428, 443, 518, 521
ApoI	RAATTY	2 cut(s)	202, 641
Asp700I	GAANNNNTTC	2 cut(s)	504, 549
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	52, 270, 326, 701
BaeGI	GKGCMC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	1038
BbvI	GCAGC	4 cut(s)	415, 455, 505, 533
BccI	CCATC	5 cut(s)	305, 344, 578, 686, 1034
BceAI	ACGGC	1 cut(s)	875
BciT130I	CCWGG	2 cut(s)	474, 927
BciVI	GTATCC	1 cut(s)	619
BcoDI	GTCTC	2 cut(s)	15, 156
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	441, 519
BfoI	RGCGCY	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	619
BglI	GCCNNNNNGGC	1 cut(s)	1109
BisI	GCNGC	6 cut(s)	78, 429, 432, 444, 519, 522
BlpI	GCTNAGC	1 cut(s)	1143
BlsI	GCNGC	6 cut(s)	79, 430, 433, 445, 520, 523
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	474, 927
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	474, 927
BmsI	GCATC	2 cut(s)	957, 1074
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	2 cut(s)	763, 863
Bpu1102I	GCTNAGC	1 cut(s)	1143
BpuEI	CTTGAG	1 cut(s)	1155
Bsa29I	ATCGAT	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	886, 926
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1111
Bse1I	ACTGG	2 cut(s)	691, 846
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	474, 927
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	886, 926
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1111
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	26, 72, 956, 1029, 1134
BseNI	ACTGG	2 cut(s)	691, 846
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	4 cut(s)	415, 455, 505, 533
BshFI	GGCC	2 cut(s)	397, 776
BshVI	ATCGAT	1 cut(s)	330
BsiWI	CGTACG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	404, 1111
BsmAI	GTCTC	2 cut(s)	15, 156
BsmBI	CGTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	397, 776
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	84, 977, 987, 1041
Bsp1720I	GCTNAGC	1 cut(s)	1143
Bsp19I	CCATGG	1 cut(s)	886
BspACI	CCGC	4 cut(s)	78, 281, 432, 1112
BspANI	GGCC	2 cut(s)	397, 776
BspCNI	CTCAG	5 cut(s)	27, 73, 955, 1030, 1135
BspDI	ATCGAT	1 cut(s)	330
BspMAI	CTGCAG	2 cut(s)	445, 523
BspPI	GGATC	2 cut(s)	985, 995
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	691, 846
BssECI	CCNNGG	2 cut(s)	886, 926
BssMI	GATC	4 cut(s)	84, 977, 987, 1041
BssT1I	CCWWGG	1 cut(s)	886
Bst2UI	CCWGG	2 cut(s)	474, 927
Bst4CI	ACNGT	3 cut(s)	265, 628, 958
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	190, 285, 698
BstDSI	CCRYGG	1 cut(s)	886
BstF5I	GGATG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	87, 980, 990, 1044
BstMAI	GTCTC	2 cut(s)	15, 156
BstMBI	GATC	4 cut(s)	84, 977, 987, 1041
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 452, 571, 1109
BstNI	CCWGG	2 cut(s)	474, 927
BstNSI	RCATGY	4 cut(s)	196, 246, 383, 578
BstSCI	CCNGG	2 cut(s)	472, 925
BstSFI	CTRYAG	2 cut(s)	441, 519
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	4 cut(s)	415, 455, 505, 533
BstV2I	GAAGAC	1 cut(s)	1038
Bsu15I	ATCGAT	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	397, 776
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	886
BtsCI	GGATG	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	4 cut(s)	261, 486, 828, 839
Cac8I	GCNNGC	3 cut(s)	190, 285, 698
CaiI	CAGNNNCTG	1 cut(s)	1142
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	1 cut(s)	1163
Csp6I	GTAC	4 cut(s)	67, 196, 467, 684
CviAII	CATG	6 cut(s)	193, 243, 319, 380, 575, 887
CviQI	GTAC	4 cut(s)	67, 196, 467, 684
DpnI	GATC	4 cut(s)	86, 979, 989, 1043
DpnII	GATC	4 cut(s)	84, 977, 987, 1041
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	886
Eco147I	AGGCCT	1 cut(s)	776
Eco32I	GATATC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	72, 519, 989
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	472, 925
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	886
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	886
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	6 cut(s)	196, 246, 322, 383, 578, 890
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 537, 569
FatI	CATG	6 cut(s)	192, 242, 318, 379, 574, 886
FauI	CCCGC	1 cut(s)	1105
Fnu4HI	GCNGC	6 cut(s)	78, 429, 432, 444, 519, 522
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	6 cut(s)	78, 429, 432, 444, 519, 522
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	6 cut(s)	78, 429, 432, 444, 519, 522
GsuI	CTGGAG	2 cut(s)	763, 863
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	397, 776
HgaI	GACGC	1 cut(s)	1163
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	196, 246, 322, 383, 578, 890
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	91, 631, 754
HindII	GTYRAC	3 cut(s)	91, 631, 754
HinfI	GANTC	4 cut(s)	37, 164, 296, 783
HpaI	GTTAAC	2 cut(s)	91, 754
HphI	GGTGA	4 cut(s)	52, 270, 326, 701
Hpy166II	GTNNAC	6 cut(s)	91, 256, 631, 754, 883, 954
Hpy188I	TCNGA	4 cut(s)	10, 510, 945, 982
Hpy188III	TCNNGA	6 cut(s)	50, 389, 780, 1007, 1069, 1172
Hpy8I	GTNNAC	6 cut(s)	91, 256, 631, 754, 883, 954
HpyAV	CCTTC	5 cut(s)	22, 386, 505, 539, 766
HpyCH4III	ACNGT	3 cut(s)	265, 628, 958
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	8 cut(s)	123, 246, 443, 521, 534, 665, 833, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 452, 571, 1109
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	6 cut(s)	196, 246, 322, 383, 578, 890
HspAI	GCGC	1 cut(s)	75
KspAI	GTTAAC	2 cut(s)	91, 754
Kzo9I	GATC	4 cut(s)	84, 977, 987, 1041
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	4 cut(s)	415, 455, 505, 533
LweI	GCATC	2 cut(s)	957, 1074
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	6 cut(s)	58, 99, 314, 371, 493, 837
MalI	GATC	4 cut(s)	86, 979, 989, 1043
MboI	GATC	4 cut(s)	84, 977, 987, 1041
MhlI	GDGCHC	1 cut(s)	859
MluCI	AATT	4 cut(s)	202, 537, 641, 798
MlyI	GAGTC	3 cut(s)	46, 158, 305
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	7 cut(s)	55, 218, 408, 787, 838, 1120, 1132
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	2 cut(s)	504, 549
MseI	TTAA	6 cut(s)	90, 174, 324, 753, 801, 948
MslI	CAYNNNNRTG	3 cut(s)	251, 348, 378
MspA1I	CMGCKG	3 cut(s)	80, 446, 565
MspR9I	CCNGG	2 cut(s)	474, 927
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	474, 927
MwoI	GCNNNNNNNGC	4 cut(s)	440, 452, 571, 1109
NcoI	CCATGG	1 cut(s)	886
NdeII	GATC	4 cut(s)	84, 977, 987, 1041
NlaIII	CATG	6 cut(s)	196, 246, 322, 383, 578, 890
NmuCI	GTSAC	4 cut(s)	58, 314, 371, 837
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	4 cut(s)	196, 246, 383, 578
PceI	AGGCCT	1 cut(s)	776
PciI	ACATGT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	125
PdmI	GAANNNNTTC	2 cut(s)	504, 549
PfeI	GAWTC	1 cut(s)	783
Pfl23II	CGTACG	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	6 cut(s)	79, 430, 433, 445, 520, 523
PleI	GAGTC	3 cut(s)	45, 158, 304
PpsI	GAGTC	3 cut(s)	45, 158, 304
PscI	ACATGT	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	472, 925
PspGI	CCWGG	2 cut(s)	472, 925
PspLI	CGTACG	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	445, 523
PstNI	CAGNNNCTG	1 cut(s)	1142
PvuII	CAGCTG	2 cut(s)	446, 565
RsaI	GTAC	4 cut(s)	68, 197, 468, 685
RsaNI	GTAC	4 cut(s)	67, 196, 467, 684
RseI	CAYNNNNRTG	3 cut(s)	251, 348, 378
SaqAI	TTAA	6 cut(s)	90, 174, 324, 753, 801, 948
SatI	GCNGC	6 cut(s)	78, 429, 432, 444, 519, 522
Sau3AI	GATC	4 cut(s)	84, 977, 987, 1041
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	3 cut(s)	46, 158, 305
ScrFI	CCNGG	2 cut(s)	474, 927
SduI	GDGCHC	1 cut(s)	859
SfaNI	GCATC	2 cut(s)	957, 1074
SfcI	CTRYAG	2 cut(s)	441, 519
SmiMI	CAYNNNNRTG	3 cut(s)	251, 348, 378
SmlI	CTYRAG	1 cut(s)	1170
SmoI	CTYRAG	1 cut(s)	1170
Sse9I	AATT	4 cut(s)	202, 537, 641, 798
SseBI	AGGCCT	1 cut(s)	776
SsiI	CCGC	4 cut(s)	78, 281, 432, 1112
SspMI	CTAG	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	776
StyD4I	CCNGG	2 cut(s)	472, 925
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	3 cut(s)	265, 628, 958
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	2 cut(s)	330, 1029
TasI	AATT	4 cut(s)	202, 537, 641, 798
TatI	WGTACW	3 cut(s)	66, 195, 683
TauI	GCSGC	2 cut(s)	80, 434
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	6 cut(s)	90, 174, 324, 753, 801, 948
Tru9I	TTAA	6 cut(s)	90, 174, 324, 753, 801, 948
TscAI	CASTG	4 cut(s)	268, 493, 835, 846
TseFI	GTSAC	4 cut(s)	58, 314, 371, 837
TseI	GCWGC	4 cut(s)	428, 443, 518, 521
Tsp45I	GTSAC	4 cut(s)	58, 314, 371, 837
TspDTI	ATGAA	5 cut(s)	346, 669, 759, 775, 785
TspRI	CASTG	4 cut(s)	268, 493, 835, 846
XapI	RAATTY	2 cut(s)	202, 641
XceI	RCATGY	4 cut(s)	196, 246, 383, 578
XmnI	GAANNNNTTC	2 cut(s)	504, 549
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	685
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.