Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009899

Physical Location & Seq

Genomic Coordinates Reverse (-)

9914730 .. 9919139

Gene Structure 4410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTACAAAAATGTTAAGAAGAAGATTGAACGAGGTGTTGCTTTCCCAACTTCCATTTCTGTGAACAACACTGTATGCCATTTCTCTCCACTTGCGAGTGATGAAACAGTGCTCGAAGAAGGGGATATTGTAAAGATTGATATGGGTTGTCATATAGATGGGTTCATTGCTATAGTCGCTCATACTCATGCTCTTCAGGCAGGGCCCATCACAGGAAGGGCTGCAGATGTCATTGCAGCTGCTAATACTGCTGCTGAAGTTGCCTTGAGGCTTGTAAAGCCGGGAAAAAAGAACAAAGATGTAACAGAGGCTATACAAAAGGTTGCTGCTGCTTATGATTGCAAAATTGTTGAAGGTGTTCTTAGCCACCAGATGAAGCAGTTTGTGATAGATGCAAACAAGGTCATATTGAGTGTCTCCAATCCAGAGACAAGAGTTGAGGAGGCAGAATTTGAGGAGAATGAAGTATATGCAATTGATATAGTAGCAAGCACAGGTGAAGGAAAGCCTAAGCTACTGGATGAGAAGCAGACAACTATATACAAGAGGGCTGTGGACAAGAGCTATCACCTGAAGATGAAAGCTTCTAGGTTCATTTTCAGTGAAATTAGCCAGAAATTCCCCCTCATGCCATTCACTGCAAGAGCTTTGGAAGAGAAAAGGGCTCGTCTGGGTTTACTTGAGTGCGTCAACCATGAACTTTTGCAGCCATATCCTGTTTTGCATGAGAAGCCTGGTGATTTTGTTGCTCATATCAAGTTCACTGTATTGCTCATGCCAAATGGATCAGACCGGATTACATCTCATCCTTTACAGGAGCTGCAACCCACTAAGCAAATAGATGATCCTGAAATCAAAGCATGGTTGGCTTTGGGCACAAAGACAAAGAAGAAAGGTGGTGGAAAGAAGAAGAAAGGTAAGAAGGGTGATAAAGCGGAGGAGTCTACCGAAGCTGAACCTATGGATGCTACAAATGGTGCTGAAACTCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

331

Amino Acids

36.35

Weight (kDa)

7.68

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	5 - 159	1.1e-16	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51800 AT3G51800 AT3G51800
fragaria_vesca	FvH4_6g11120 FvH4_6g11120 FvH4_6g11120
malus_domestica	MD00G1062200.v1.1 MD12G1172200.v1.1
prunus_persica	Prupe.6G280500_v2.0.a1 Prupe.6G280500_v2.0.a1
pyrus_communis	pycom04g14310 pycom12g16340
rosa_chinensis	RchiOBHm_Chr3g0462561
rosa_laevigata	RLG00000024848
rosa_roxburghii	Rroxscaffold_6G00417390
rosa_rugosa	Rorug03G0057600 Rorug03G0057600
rosa_samantha	Rh3AG115600 Rh3CG122500 Rh3DG121200
rosa_wichuraiana	Rw3G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	944
AciI	CCGC	1 cut(s)	935
AclWI	GGATC	2 cut(s)	793, 839
AcsI	RAATTY	2 cut(s)	449, 617
AcuI	CTGAAG	3 cut(s)	179, 276, 593
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	29, 353
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	7 cut(s)	239, 514, 564, 584, 647, 820, 953
AluI	AGCT	7 cut(s)	239, 514, 564, 584, 647, 820, 953
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	421, 422
AlwI	GGATC	2 cut(s)	793, 839
AlwNI	CAGNNNCTG	1 cut(s)	820
AoxI	GGCC	1 cut(s)	203
ApaI	GGGCCC	1 cut(s)	207
ApeKI	GCWGC	8 cut(s)	221, 236, 239, 251, 326, 329, 706, 820
ApoI	RAATTY	2 cut(s)	449, 617
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	203, 204
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	509, 560, 749, 938
BaeGI	GKGCMC	2 cut(s)	207, 878
BanII	GRGCYC	2 cut(s)	207, 667
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	8 cut(s)	208, 226, 238, 248, 313, 316, 718, 807
BccI	CCATC	2 cut(s)	152, 215
BciT130I	CCWGG	1 cut(s)	735
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	421, 422
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	171, 222
BisI	GCNGC	8 cut(s)	222, 237, 240, 252, 327, 330, 707, 821
BlsI	GCNGC	8 cut(s)	223, 238, 241, 253, 328, 331, 708, 822
Bme1390I	CCNGG	2 cut(s)	282, 735
BmgT120I	GGNCC	2 cut(s)	203, 204
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	282, 735
BmsI	GCATC	2 cut(s)	382, 955
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	3 cut(s)	286, 701, 972
BpuMI	CCSGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	2 cut(s)	165, 231
BseBI	CCWGG	1 cut(s)	735
BseGI	GGATG	3 cut(s)	526, 805, 970
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	2 cut(s)	165, 231
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	3 cut(s)	455, 470, 953
BseSI	GKGCMC	2 cut(s)	207, 878
BseXI	GCAGC	8 cut(s)	208, 226, 238, 248, 313, 316, 718, 807
BshFI	GGCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	281, 793
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	421, 422
BsnI	GGCC	1 cut(s)	205
Bsp120I	GGGCCC	1 cut(s)	203
Bsp1286I	GDGCHC	4 cut(s)	114, 207, 667, 878
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	785, 844
BspACI	CCGC	1 cut(s)	935
BspANI	GGCC	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	2 cut(s)	793, 839
BspQI	GCTCTTC	1 cut(s)	198
BsrDI	GCAATG	2 cut(s)	165, 231
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	522
BssMI	GATC	2 cut(s)	785, 844
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	3 cut(s)	73, 109, 766
Bst6I	CTCTTC	2 cut(s)	198, 648
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	362, 510, 831
BstF5I	GGATG	3 cut(s)	526, 805, 970
BstKTI	GATC	2 cut(s)	788, 847
BstMAI	GTCTC	2 cut(s)	421, 422
BstMBI	GATC	2 cut(s)	785, 844
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 197, 248, 260, 277, 730, 866
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	280, 733
BstSFI	CTRYAG	2 cut(s)	171, 222
BstSLI	GKGCMC	2 cut(s)	207, 878
BstV1I	GCAGC	8 cut(s)	208, 226, 238, 248, 313, 316, 718, 807
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	526, 805, 970
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	5 cut(s)	69, 114, 607, 636, 762
Cac8I	GCNNGC	1 cut(s)	490
CaiI	CAGNNNCTG	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	203, 204
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	6 cut(s)	188, 628, 695, 725, 775, 861
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	362, 510, 831
DpnI	GATC	2 cut(s)	787, 846
DpnII	GATC	2 cut(s)	785, 844
Eam1104I	CTCTTC	2 cut(s)	198, 648
EarI	CTCTTC	2 cut(s)	198, 648
Eco24I	GRGCYC	2 cut(s)	207, 667
Eco57I	CTGAAG	3 cut(s)	179, 276, 593
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	733
EcoT38I	GRGCYC	2 cut(s)	207, 667
FaeI	CATG	6 cut(s)	191, 631, 698, 728, 778, 864
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	6 cut(s)	187, 627, 694, 724, 774, 860
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	8 cut(s)	222, 237, 240, 252, 327, 330, 707, 821
FokI	GGATG	3 cut(s)	533, 792, 977
FriOI	GRGCYC	2 cut(s)	207, 667
Fsp4HI	GCNGC	8 cut(s)	222, 237, 240, 252, 327, 330, 707, 821
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	8 cut(s)	222, 237, 240, 252, 327, 330, 707, 821
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	2 cut(s)	281, 793
HgaI	GACGC	1 cut(s)	676
Hin1II	CATG	6 cut(s)	191, 631, 698, 728, 778, 864
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	1 cut(s)	941
HpaII	CCGG	2 cut(s)	281, 793
HphI	GGTGA	4 cut(s)	509, 560, 749, 938
Hpy166II	GTNNAC	6 cut(s)	64, 556, 677, 691, 762, 945
Hpy188I	TCNGA	1 cut(s)	790
Hpy188III	TCNNGA	2 cut(s)	425, 848
Hpy8I	GTNNAC	6 cut(s)	64, 556, 677, 691, 762, 945
HpyAV	CCTTC	5 cut(s)	113, 210, 347, 494, 916
HpyCH4III	ACNGT	3 cut(s)	73, 109, 766
HpyCH4V	TGCA	9 cut(s)	224, 236, 342, 395, 473, 641, 706, 724, 823
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 197, 248, 260, 277, 730, 866
HpyF3I	CTNAG	3 cut(s)	362, 510, 831
Hsp92II	CATG	6 cut(s)	191, 631, 698, 728, 778, 864
Kzo9I	GATC	2 cut(s)	785, 844
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	8 cut(s)	208, 226, 238, 248, 313, 316, 718, 807
LweI	GCATC	2 cut(s)	382, 955
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	787, 846
MboI	GATC	2 cut(s)	785, 844
MboII	GAAGA	9 cut(s)	31, 34, 128, 185, 586, 665, 901, 919, 922
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	4 cut(s)	114, 207, 667, 878
MluCI	AATT	5 cut(s)	345, 449, 474, 606, 617
MlyI	GAGTC	1 cut(s)	950
MnlI	CCTC	9 cut(s)	26, 261, 301, 433, 436, 448, 540, 635, 931
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	3 cut(s)	59, 156, 186
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	2 cut(s)	281, 793
MspR9I	CCNGG	2 cut(s)	282, 735
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	7 cut(s)	176, 197, 248, 260, 277, 730, 866
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	785, 844
NlaIII	CATG	6 cut(s)	191, 631, 698, 728, 778, 864
NlaIV	GGNNCC	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	357
PkrI	GCNGC	8 cut(s)	223, 238, 241, 253, 328, 331, 708, 822
PleI	GAGTC	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	949
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	205
PspOMI	GGGCCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	203, 204
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	3 cut(s)	59, 156, 186
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	8 cut(s)	222, 237, 240, 252, 327, 330, 707, 821
Sau3AI	GATC	2 cut(s)	785, 844
Sau96I	GGNCC	2 cut(s)	203, 204
SchI	GAGTC	1 cut(s)	950
ScrFI	CCNGG	2 cut(s)	282, 735
SduI	GDGCHC	4 cut(s)	114, 207, 667, 878
SfaNI	GCATC	2 cut(s)	382, 955
SfcI	CTRYAG	2 cut(s)	171, 222
SmiMI	CAYNNNNRTG	3 cut(s)	59, 156, 186
SmlI	CTYRAG	3 cut(s)	265, 680, 987
SmoI	CTYRAG	3 cut(s)	265, 680, 987
Sse9I	AATT	5 cut(s)	345, 449, 474, 606, 617
SsiI	CCGC	1 cut(s)	935
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	280, 733
TaaI	ACNGT	3 cut(s)	73, 109, 766
TaqI	TCGA	1 cut(s)	114
TasI	AATT	5 cut(s)	345, 449, 474, 606, 617
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	5 cut(s)	76, 114, 607, 643, 769
TseI	GCWGC	8 cut(s)	221, 236, 239, 251, 326, 329, 706, 820
TspDTI	ATGAA	7 cut(s)	117, 154, 389, 477, 583, 593, 711
TspRI	CASTG	5 cut(s)	76, 114, 607, 643, 769
XapI	RAATTY	2 cut(s)	449, 617
XmiI	GTMKAC	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.