Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009899

Physical Location & Seq

Genomic Coordinates Forward (+)

26218524 .. 26222545

Gene Structure 4022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G280500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCGGACGATGAGAGGGAGGAGAAGGAGTTGGATCTCAGCTCTCCTGAAGTAGTCACCAAATACAAGAGTGCCGCTGAGATTGTTAACAAGGCTCTGCAGTTGGTAATATCCGAATGCAAACCGAAAGCTAAGATTGTGGACCTTTGTGAGAAAGGTGATTCATACATCAGAGAGCAAACTGGTAATATGTACAAAAATGTGAAGAAGAAGATTGAACGAGGTGTTGCCTTTCCAACTTGCATTTCTGTGAACAACACTGTATGCCATTTCTCCCCGCTTGCCAGTGACGAGACAGTGTTGGAAGAAGGAGATATTCTGAAGATTGATTTGGGTTGTCATATTGACGGGTTCATTGCCATAGTTGCACATACTCATGCTCTTCAAGCAGGGCCTGTTACAGGAAAGGCAGCTGACGTTATTGCAGCTGCTAATACTGCTGCTGAAGTTGCCTTAAGGCTTGTAAGGCCAGGAAAAAAGAATAAAGATGTAACAGAGGCGATCCAAAAGGTTGCTGCAGCTTATGACTGCAAAATCGTTGAAGGTGTTCTTAGCCATCAGTTGAAGCAGTTTGTGATAGATGGGAACAAGGTCATATTAAGCGCATCCAATCCAGATACAAGAGTTGATGAGGCAGAATTTGAGGAGAACGAAGTTTATTCAATTGATATTGTCACAAGCACAGGTGAAGGAAAGCCTAAGCTGTTGGATGAGAAGCAGACGACTGTCTATAAGAGAGCTGTTGATAAGAACTATCACTTGAAGATGAAAGCTTCTAGGTTTATTTTCAGTGAAATAAGGGAGAAGTTTCCCATCATGCCATTCACTGCTAGAGCTTTGGAAGAGAAAAGGGCTAGGCTGGGTTTACTTGAATGCGTCAACCACGAGCTTCTGCAGCCATATCCTGTTCTTCACGAGAAACCTGGTGATTTGGTTGCCCATATCAAGTTCACTGTCTTGCTGATGCCAAATGGATCAGATCGGATTACATCTCATCCTTTACAGGAGCTGCAGCCCACTAAACAAATAGATGATCCTGAAATCAAAGCCTGGTTGGCTTTGGGGACAAAGACCAAGAAGAAGGGTGGCGGCAAAAAGAAAAAGGGTAAGAAGAGTGACAAGGCTGAGGAGTCTACAGAAGCCGAACCAATGGATGCGACAACAAATGGTGCTGAGTCTCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

396

Amino Acids

43.55

Weight (kDa)

6.41

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51800 AT3G51800 AT3G51800
fragaria_vesca	FvH4_6g11120 FvH4_6g11120 FvH4_6g11120
malus_domestica	MD00G1062200.v1.1 MD12G1172200.v1.1
prunus_persica	Prupe.6G280500_v2.0.a1 Prupe.6G280500_v2.0.a1
pyrus_communis	pycom04g14310 pycom12g16340
rosa_chinensis	RchiOBHm_Chr3g0462561
rosa_laevigata	RLG00000024848
rosa_roxburghii	Rroxscaffold_6G00417390
rosa_rugosa	Rorug03G0057600 Rorug03G0057600
rosa_samantha	Rh3AG115600 Rh3CG122500 Rh3DG121200
rosa_wichuraiana	Rw3G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1133
AciI	CCGC	3 cut(s)	75, 278, 1089
AclWI	GGATC	4 cut(s)	42, 496, 982, 1028
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	3 cut(s)	69, 341, 465
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	7 cut(s)	218, 386, 542, 565, 663, 763, 872
AjnI	CCWGG	3 cut(s)	469, 922, 1049
AjuI	GAANNNNNNNTTGG	4 cut(s)	229, 261, 314, 346
Alw26I	GTCTC	2 cut(s)	287, 1182
AlwI	GGATC	4 cut(s)	42, 496, 982, 1028
AlwNI	CAGNNNCTG	2 cut(s)	395, 1009
AoxI	GGCC	2 cut(s)	392, 467
ApeKI	GCWGC	9 cut(s)	410, 425, 428, 440, 515, 518, 895, 1009, 1012
ApoI	RAATTY	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	142, 392
AsuHPI	GGTGA	4 cut(s)	49, 170, 698, 938
AvaII	GGWCC	1 cut(s)	142
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BauI	CACGAG	2 cut(s)	884, 914
BbvCI	CCTCAGC	1 cut(s)	1125
BbvI	GCAGC	9 cut(s)	415, 422, 427, 437, 502, 530, 907, 996, 1024
BccI	CCATC	3 cut(s)	564, 575, 821
BciT130I	CCWGG	3 cut(s)	471, 924, 1051
BcoDI	GTCTC	2 cut(s)	287, 1182
BfaI	CTAG	3 cut(s)	777, 831, 855
BfmI	CTRYAG	5 cut(s)	98, 516, 893, 1010, 1134
BfrI	CTTAAG	1 cut(s)	454
BglI	GCCNNNNNGGC	1 cut(s)	1055
Bme1390I	CCNGG	3 cut(s)	471, 924, 1051
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 392
BmrFI	CCNGG	3 cut(s)	471, 924, 1051
BmsI	GCATC	3 cut(s)	614, 954, 1144
BoxI	GACNNNNGTC	1 cut(s)	725
Bpu10I	CCTNAGC	2 cut(s)	699, 1125
BpuEI	CTTGAG	1 cut(s)	1164
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	187, 285
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	471, 924, 1051
BseGI	GGATG	4 cut(s)	605, 715, 994, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	52, 69, 1116, 1164
BseNI	ACTGG	2 cut(s)	187, 285
BseRI	GAGGAG	3 cut(s)	35, 659, 1142
BseXI	GCAGC	9 cut(s)	415, 422, 427, 437, 502, 530, 907, 996, 1024
BseYI	CCCAGC	1 cut(s)	859
BshFI	GGCC	2 cut(s)	394, 469
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	287, 1182
BsmFI	GGGAC	1 cut(s)	1078
BsmI	GAATGC	2 cut(s)	122, 878
BsnI	GGCC	2 cut(s)	394, 469
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	34, 501, 974, 979, 1033
BspACI	CCGC	3 cut(s)	75, 278, 1089
BspANI	GGCC	2 cut(s)	394, 469
BspCNI	CTCAG	4 cut(s)	51, 70, 1117, 1165
BspMAI	CTGCAG	4 cut(s)	102, 520, 897, 1014
BspPI	GGATC	4 cut(s)	42, 496, 982, 1028
BspQI	GCTCTTC	1 cut(s)	387
BspTI	CTTAAG	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	187, 285
BssMI	GATC	5 cut(s)	34, 501, 974, 979, 1033
BssSI	CACGAG	2 cut(s)	884, 914
Bst2BI	CACGAG	2 cut(s)	884, 914
Bst2UI	CCWGG	3 cut(s)	471, 924, 1051
Bst4CI	ACNGT	4 cut(s)	262, 298, 727, 955
Bst6I	CTCTTC	3 cut(s)	387, 837, 1106
BstAFI	CTTAAG	1 cut(s)	454
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	7 cut(s)	38, 78, 132, 551, 699, 1125, 1173
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstF5I	GGATG	4 cut(s)	605, 715, 994, 1159
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	5 cut(s)	37, 504, 977, 982, 1036
BstMAI	GTCTC	2 cut(s)	287, 1182
BstMBI	GATC	5 cut(s)	34, 501, 974, 979, 1033
BstMWI	GCNNNNNNNGC	7 cut(s)	365, 386, 437, 449, 466, 895, 1055
BstNI	CCWGG	3 cut(s)	471, 924, 1051
BstPAI	GACNNNNGTC	1 cut(s)	725
BstSCI	CCNGG	3 cut(s)	469, 922, 1049
BstSFI	CTRYAG	5 cut(s)	98, 516, 893, 1010, 1134
BstV1I	GCAGC	9 cut(s)	415, 422, 427, 437, 502, 530, 907, 996, 1024
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	394, 469
BtsCI	GGATG	4 cut(s)	605, 715, 994, 1159
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	6 cut(s)	258, 292, 303, 796, 825, 951
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	2 cut(s)	395, 1009
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	142, 392
CseI	GACGC	1 cut(s)	865
CsiI	ACCWGGT	1 cut(s)	922
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	377, 817, 1185
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	7 cut(s)	38, 78, 132, 551, 699, 1125, 1173
DpnI	GATC	5 cut(s)	36, 503, 976, 981, 1035
DpnII	GATC	5 cut(s)	34, 501, 974, 979, 1033
Eam1104I	CTCTTC	3 cut(s)	387, 837, 1106
EarI	CTCTTC	3 cut(s)	387, 837, 1106
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	3 cut(s)	69, 341, 465
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	469, 922, 1049
FaeI	CATG	3 cut(s)	380, 820, 1188
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	3 cut(s)	376, 816, 1184
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	1133
FokI	GGATG	4 cut(s)	592, 722, 981, 1166
FspBI	CTAG	3 cut(s)	777, 831, 855
GlaI	GCGC	1 cut(s)	604
GsaI	CCCAGC	1 cut(s)	863
HaeIII	GGCC	2 cut(s)	394, 469
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	3 cut(s)	380, 820, 1188
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	2 cut(s)	88, 880
HindII	GTYRAC	2 cut(s)	88, 880
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	3 cut(s)	161, 1130, 1175
HpaI	GTTAAC	1 cut(s)	88
HphI	GGTGA	4 cut(s)	49, 170, 698, 938
Hpy166II	GTNNAC	7 cut(s)	88, 142, 253, 866, 880, 951, 1134
Hpy188I	TCNGA	6 cut(s)	7, 115, 173, 321, 979, 984
Hpy188III	TCNNGA	4 cut(s)	47, 614, 914, 1037
Hpy8I	GTNNAC	7 cut(s)	88, 142, 253, 866, 880, 951, 1134
HpyAV	CCTTC	5 cut(s)	19, 302, 536, 683, 1075
HpyCH4III	ACNGT	4 cut(s)	262, 298, 727, 955
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	9 cut(s)	100, 120, 243, 368, 425, 518, 531, 895, 1012
HpyF10VI	GCNNNNNNNGC	7 cut(s)	365, 386, 437, 449, 466, 895, 1055
HpyF3I	CTNAG	7 cut(s)	38, 78, 132, 551, 699, 1125, 1173
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	380, 820, 1188
HspAI	GCGC	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	34, 501, 974, 979, 1033
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	1006
Lsp1109I	GCAGC	9 cut(s)	415, 422, 427, 437, 502, 530, 907, 996, 1024
LweI	GCATC	3 cut(s)	614, 954, 1144
MabI	ACCWGGT	1 cut(s)	922
MaeI	CTAG	3 cut(s)	777, 831, 855
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	6 cut(s)	55, 287, 397, 490, 673, 1115
MalI	GATC	5 cut(s)	36, 503, 976, 981, 1035
MboI	GATC	5 cut(s)	34, 501, 974, 979, 1033
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	2 cut(s)	638, 663
MlyI	GAGTC	2 cut(s)	1139, 1184
MmeI	TCCRAC	4 cut(s)	12, 260, 282, 687
MnlI	CCTC	7 cut(s)	9, 13, 215, 490, 625, 637, 1120
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	3 cut(s)	87, 455, 599
MslI	CAYNNNNRTG	2 cut(s)	248, 375
MspA1I	CMGCKG	3 cut(s)	77, 413, 428
MspCI	CTTAAG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	471, 924, 1051
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	2 cut(s)	122, 878
MvaI	CCWGG	3 cut(s)	471, 924, 1051
MwoI	GCNNNNNNNGC	7 cut(s)	365, 386, 437, 449, 466, 895, 1055
NdeII	GATC	5 cut(s)	34, 501, 974, 979, 1033
NlaIII	CATG	3 cut(s)	380, 820, 1188
NmuCI	GTSAC	4 cut(s)	55, 287, 673, 1115
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	2 cut(s)	122, 878
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	1138, 1183
PpsI	GAGTC	2 cut(s)	1138, 1183
PshAI	GACNNNNGTC	1 cut(s)	725
Psp6I	CCWGG	3 cut(s)	469, 922, 1049
PspFI	CCCAGC	1 cut(s)	859
PspGI	CCWGG	3 cut(s)	469, 922, 1049
PspPI	GGNCC	2 cut(s)	142, 392
PstI	CTGCAG	4 cut(s)	102, 520, 897, 1014
PstNI	CAGNNNCTG	2 cut(s)	395, 1009
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	413, 428
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	248, 375
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	87, 455, 599
Sau3AI	GATC	5 cut(s)	34, 501, 974, 979, 1033
Sau96I	GGNCC	2 cut(s)	142, 392
SchI	GAGTC	2 cut(s)	1139, 1184
ScrFI	CCNGG	3 cut(s)	471, 924, 1051
SexAI	ACCWGGT	1 cut(s)	922
SfaNI	GCATC	3 cut(s)	614, 954, 1144
SfcI	CTRYAG	5 cut(s)	98, 516, 893, 1010, 1134
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	248, 375
SmlI	CTYRAG	2 cut(s)	454, 1179
SmoI	CTYRAG	2 cut(s)	454, 1179
Sse9I	AATT	2 cut(s)	638, 663
SsiI	CCGC	3 cut(s)	75, 278, 1089
SspMI	CTAG	3 cut(s)	777, 831, 855
StyD4I	CCNGG	3 cut(s)	469, 922, 1049
TaaI	ACNGT	4 cut(s)	262, 298, 727, 955
TaiI	ACGT	1 cut(s)	420
TasI	AATT	2 cut(s)	638, 663
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	2 cut(s)	77, 1092
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	87, 455, 599
Tru9I	TTAA	3 cut(s)	87, 455, 599
TscAI	CASTG	6 cut(s)	265, 292, 303, 796, 832, 958
TseFI	GTSAC	4 cut(s)	55, 287, 673, 1115
TseI	GCWGC	9 cut(s)	410, 425, 428, 440, 515, 518, 895, 1009, 1012
Tsp45I	GTSAC	4 cut(s)	55, 287, 673, 1115
TspDTI	ATGAA	3 cut(s)	153, 343, 782
TspRI	CASTG	6 cut(s)	265, 292, 303, 796, 832, 958
Vha464I	CTTAAG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	1133
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	3 cut(s)	777, 831, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.