Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009899

Physical Location & Seq

Genomic Coordinates Reverse (-)

6647256 .. 6651484

Gene Structure 4229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11120.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCGTCCGACGACGAGAGGGAGGAGAAGGAGTTGGATCTCACCTCTCCTGAAGTGGTTACCAAATACAAGAGCGCTGCTGAGATTGTTAACAAGGCTTTGCAGCGAGTGATAGCGGAATGCAAGCCGAAAGCTAAGATTGTGGACGTTTGTGAGATAGGTGATTCATTCATCAGAGAGCAAACCGGTAACATGTACAAAAGTGCGAAGAAGAAGATTGAACGAGGAGTTGCTTTCCCAACTTCCATTTCTGTGAACAACACTGTATGCCATTTCTCTCCGCTTGCCACCGATGAAACAGTGTTTGAAGAAGGGGATATTGTAAAGATTGATATGGGTTGTCATATTGATGGGTTCATTGCCATAGTCGCACACACTCATGCTCTTCAAACAGGGCCTATTACTGGAAGAGCTGCAGATGTTATAGCAGCTGCTAACACTGCTGCTGAAGTTGCCTTGAGGCTTGTCAAGCCAGGAAAAAAGAACAAAGATGTTACAGAGGCAATTCAAAAGGTTGCTGCTGCTTATGATTGCAAAATTGTTGAAGGTGTTCTTAGCCACCAGATGAAGCAGTTTGTGATAGATGCAAACAAGGTCATATTGAGCATATCCAATCCAGAGACAAGAGTGGAGGAGGCAGAATTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAGCAAGCACAGGTGAAGGAAAGCCAAAGCTACTGGATGAGAAGCAGACAACTATATACAAGAGAGCTGTGGACAAGAACTATCACCTGAAGATGAAAGCCTCTAGATTCATTTTCAGTGAAATTACCCAGAAATTCCCCCTTATGCCATTCACTGCAAGGGCTTTGGAAGAGAAAAGGGCTCGTTTGGGTTTATTTGAGTGCGTCAACCATGATCTTTTGCAGCCATATCCTGTTCTGCACGAGAAACCTGGTGATATTGTTGCTCATATCAAGTTCACTGTATTGCTCATGCCAAATGGATCAGACCGGATCACATCTCATCCCCTACAAGAGTTGCAGCCCACTAAGCAAGTAGATGATCCCGAAATCAAAGCATGGTTGGCTTTGGGCACCAAGACAAAGAAGAAAGGTGGTGGAAAGAAAAAGAAAGGTAAGAAGGGTGATAAAGTGGAAGGGTCTACAGAAGCAGAACCTATGGATGCTACAAATGATGCTGAAACTCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

396

Amino Acids

43.56

Weight (kDa)

6.41

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	22 - 224	1.9e-21	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51800 AT3G51800 AT3G51800
fragaria_vesca	FvH4_6g11120 FvH4_6g11120 FvH4_6g11120
malus_domestica	MD00G1062200.v1.1 MD12G1172200.v1.1
prunus_persica	Prupe.6G280500_v2.0.a1 Prupe.6G280500_v2.0.a1
pyrus_communis	pycom04g14310 pycom12g16340
rosa_chinensis	RchiOBHm_Chr3g0462561
rosa_laevigata	RLG00000024848
rosa_roxburghii	Rroxscaffold_6G00417390
rosa_rugosa	Rorug03G0057600 Rorug03G0057600
rosa_samantha	Rh3AG115600 Rh3CG122500 Rh3DG121200
rosa_wichuraiana	Rw3G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	1136
AciI	CCGC	2 cut(s)	116, 281
AclWI	GGATC	4 cut(s)	45, 985, 995, 1031
AcsI	RAATTY	2 cut(s)	641, 809
AcuI	CTGAAG	3 cut(s)	72, 468, 785
AfaI	GTAC	1 cut(s)	197
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	185
AgsI	TTSAA	5 cut(s)	221, 308, 389, 509, 545
AjnI	CCWGG	2 cut(s)	472, 925
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	5 cut(s)	134, 413, 431, 706, 743
AluI	AGCT	5 cut(s)	134, 413, 431, 706, 743
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	4 cut(s)	45, 985, 995, 1031
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	641, 809
AsiGI	ACCGGT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	6 cut(s)	34, 173, 701, 752, 941, 1130
BaeGI	GKGCMC	1 cut(s)	1070
BanI	GGYRCC	1 cut(s)	1067
BanII	GRGCYC	1 cut(s)	859
BauI	CACGAG	1 cut(s)	917
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	2 cut(s)	474, 927
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	2 cut(s)	414, 1137
BfoI	RGCGCY	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	474, 927
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	1069
BmrFI	CCNGG	2 cut(s)	474, 927
BmsI	GCATC	3 cut(s)	574, 1147, 1159
BpuEI	CTTGAG	2 cut(s)	478, 1164
BsaWI	WCCGGW	2 cut(s)	185, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	409, 714
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	474, 927
BseGI	GGATG	3 cut(s)	718, 997, 1162
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	409, 714
BseRI	GAGGAG	4 cut(s)	38, 240, 647, 662
BseSI	GKGCMC	1 cut(s)	1070
BsgI	GTGCAG	1 cut(s)	899
BshFI	GGCC	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	1067
BshTI	ACCGGT	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	186, 985
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	859, 1070
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	37, 889, 977, 987, 1036
BspACI	CCGC	2 cut(s)	116, 281
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	1069
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	4 cut(s)	45, 985, 995, 1031
BspQI	GCTCTTC	2 cut(s)	390, 403
BspT107I	GGYRCC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	409, 714
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	5 cut(s)	37, 889, 977, 987, 1036
BssSI	CACGAG	1 cut(s)	917
Bst2BI	CACGAG	1 cut(s)	917
Bst2UI	CCWGG	2 cut(s)	474, 927
Bst4CI	ACNGT	3 cut(s)	265, 301, 958
Bst6I	CTCTTC	3 cut(s)	390, 403, 840
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	125, 285, 682
BstDEI	CTNAG	4 cut(s)	81, 135, 554, 1023
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	718, 997, 1162
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	5 cut(s)	40, 892, 980, 990, 1039
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	5 cut(s)	37, 889, 977, 987, 1036
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 440, 452, 469, 1024, 1058
BstNI	CCWGG	2 cut(s)	474, 927
BstNSI	RCATGY	1 cut(s)	196
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	472, 925
BstSFI	CTRYAG	2 cut(s)	414, 1137
BstSLI	GKGCMC	1 cut(s)	1070
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	718, 997, 1162
BtsI	GCAGTG	2 cut(s)	438, 828
BtsIMutI	CAGTG	6 cut(s)	261, 306, 438, 799, 828, 954
Cac8I	GCNNGC	3 cut(s)	125, 285, 682
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	868
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	185
CviAII	CATG	5 cut(s)	193, 380, 887, 967, 1053
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	81, 135, 554, 1023
DpnI	GATC	5 cut(s)	39, 891, 979, 989, 1038
DpnII	GATC	5 cut(s)	37, 889, 977, 987, 1036
Eam1104I	CTCTTC	3 cut(s)	390, 403, 840
EarI	CTCTTC	3 cut(s)	390, 403, 840
Eco24I	GRGCYC	1 cut(s)	859
Eco47III	AGCGCT	1 cut(s)	76
Eco57I	CTGAAG	3 cut(s)	72, 468, 785
Eco91I	GGTNACC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	472, 925
EcoT38I	GRGCYC	1 cut(s)	859
FaeI	CATG	5 cut(s)	196, 383, 890, 970, 1056
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	5 cut(s)	192, 379, 886, 966, 1052
FblI	GTMKAC	1 cut(s)	1136
FokI	GGATG	3 cut(s)	725, 984, 1169
FriOI	GRGCYC	1 cut(s)	859
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	2 cut(s)	186, 985
HgaI	GACGC	1 cut(s)	868
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	196, 383, 890, 970, 1056
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	2 cut(s)	91, 883
HindII	GTYRAC	2 cut(s)	91, 883
HinfI	GANTC	2 cut(s)	164, 783
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	186, 985
HphI	GGTGA	6 cut(s)	34, 173, 701, 752, 941, 1130
Hpy166II	GTNNAC	7 cut(s)	91, 145, 256, 748, 883, 954, 1137
Hpy188I	TCNGA	3 cut(s)	10, 176, 982
Hpy188III	TCNNGA	4 cut(s)	50, 617, 780, 1040
Hpy8I	GTNNAC	7 cut(s)	91, 145, 256, 748, 883, 954, 1137
Hpy99I	CGWCG	2 cut(s)	14, 17
HpyAV	CCTTC	6 cut(s)	22, 305, 539, 686, 1108, 1124
HpyCH4III	ACNGT	3 cut(s)	265, 301, 958
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 440, 452, 469, 1024, 1058
HpyF3I	CTNAG	4 cut(s)	81, 135, 554, 1023
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	196, 383, 890, 970, 1056
HspAI	GCGC	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	5 cut(s)	37, 889, 977, 987, 1036
LguI	GCTCTTC	2 cut(s)	390, 403
LweI	GCATC	3 cut(s)	574, 1147, 1159
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	58, 188, 493
MalI	GATC	5 cut(s)	39, 891, 979, 989, 1038
MboI	GATC	5 cut(s)	37, 889, 977, 987, 1036
MboII	GAAGA	9 cut(s)	220, 223, 226, 320, 377, 420, 778, 857, 1093
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	859, 1070
MluCI	AATT	6 cut(s)	504, 537, 641, 666, 798, 809
MmeI	TCCRAC	2 cut(s)	15, 33
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	3 cut(s)	251, 348, 378
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	2 cut(s)	186, 985
MspR9I	CCNGG	2 cut(s)	474, 927
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	474, 927
MwoI	GCNNNNNNNGC	6 cut(s)	368, 440, 452, 469, 1024, 1058
NdeII	GATC	5 cut(s)	37, 889, 977, 987, 1036
NlaIII	CATG	5 cut(s)	196, 383, 890, 970, 1056
NlaIV	GGNNCC	1 cut(s)	1069
NspI	RCATGY	1 cut(s)	196
PciI	ACATGT	1 cut(s)	192
PciSI	GCTCTTC	2 cut(s)	390, 403
PctI	GAATGC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	164, 783
PinAI	ACCGGT	1 cut(s)	185
PscI	ACATGT	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	472, 925
PspEI	GGTNACC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	472, 925
PspN4I	GGNNCC	1 cut(s)	1069
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	3 cut(s)	251, 348, 378
SapI	GCTCTTC	2 cut(s)	390, 403
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	37, 889, 977, 987, 1036
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	474, 927
SduI	GDGCHC	2 cut(s)	859, 1070
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	3 cut(s)	574, 1147, 1159
SfcI	CTRYAG	2 cut(s)	414, 1137
SmiMI	CAYNNNNRTG	3 cut(s)	251, 348, 378
SmlI	CTYRAG	2 cut(s)	457, 1179
SmoI	CTYRAG	2 cut(s)	457, 1179
Sse9I	AATT	6 cut(s)	504, 537, 641, 666, 798, 809
SsiI	CCGC	2 cut(s)	116, 281
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	2 cut(s)	472, 925
TaaI	ACNGT	3 cut(s)	265, 301, 958
TaiI	ACGT	1 cut(s)	150
TasI	AATT	6 cut(s)	504, 537, 641, 666, 798, 809
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	164, 783
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	6 cut(s)	268, 306, 445, 799, 835, 961
TspDTI	ATGAA	8 cut(s)	156, 160, 309, 346, 581, 669, 775, 785
TspRI	CASTG	6 cut(s)	268, 306, 445, 799, 835, 961
XapI	RAATTY	2 cut(s)	641, 809
XbaI	TCTAGA	1 cut(s)	779
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	1136
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.