AT3G52040

Protein of unknown function (DUF2462)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014444
Physical Location & Seq
Reverse (-)
19304170 .. 19304861
692 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52040.1

Sequence Viewer

Length: 273 bp
ATGACGCAGAAGAGCAATCAGTTCAAGGGCCAACAGAAGAGGAAGACTATTGCTCCTAATCGCCATGGCAAATCCATTCAAACTCGCAAAGGGAAGAGAAATGTGAAACCAACAAAGATGACGAAAGAGATGGACACTGATCGGGAGCTTACGAAATTCATAAACCATTGCAATGAAGTGAAAGCAACTAATGCAGCTTGTAAAGAAGGTGGTCAACTCAATATCATCAAAGCTGAATCTCAACCTGAGCCATCCAAGAAATCCGCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2462

Protein Analysis

90

Amino Acids

10.18

Weight (kDa)

10.26

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2462 PF09495 1 - 80 6.1e-08 Protein of unknown function (DUF2462)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52040
fragaria_vesca FvH4_7g01820
malus_domestica MD02G1300200.v1.1 MD07G1024700.v1.1
prunus_persica Prupe.2G024400_v2.0.a1
pyrus_communis pycom02g25220
rosa_chinensis RchiOBHm_Chr1g0318451
rosa_multiflora Rmu_sc0004803.1_g000001
rosa_roxburghii Rroxscaffold_4G00329240
rosa_rugosa Rorug01G0021400
rosa_samantha Rh1AG033500 Rh1BG029500 Rh1CG031800 Rh1CG033200 Rh1DG037300 Rh1DG037700
rosa_wichuraiana Rw1G002680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 155
AgsI TTSAA 2 cut(s) 25, 80
AluBI AGCT 3 cut(s) 148, 197, 233
AluI AGCT 3 cut(s) 148, 197, 233
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 124, 259
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse3DI GCAATG 2 cut(s) 166, 178
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 251
BseMI GCAATG 2 cut(s) 166, 178
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 30
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 5
BsrDI GCAATG 2 cut(s) 166, 178
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 64
Bst6I CTCTTC 3 cut(s) 5, 32, 89
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 28
CseI GACGC 1 cut(s) 13
CviAII CATG 1 cut(s) 65
CviJI RGCY 5 cut(s) 30, 148, 197, 233, 250
CviKI_1 RGCY 5 cut(s) 30, 148, 197, 233, 250
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 5, 32, 89
EarI CTCTTC 3 cut(s) 5, 32, 89
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 68
FaiI YATR 2 cut(s) 66, 161
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 30
HgaI GACGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 171, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 58, 145
LpnPI CCDG 1 cut(s) 258
Lsp1109I GCAGC 1 cut(s) 206
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 22, 49, 55, 106
MluCI AATT 1 cut(s) 155
MnlI CCTC 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 191
NcoI CCATGG 1 cut(s) 64
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 28
SetI ASST 5 cut(s) 150, 199, 211, 235, 247
SgeI CNNG 7 cut(s) 37, 77, 96, 155, 210, 257, 268
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 155
SsiI CCGC 1 cut(s) 264
StyI CCWWGG 1 cut(s) 64
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 148, 189
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.