pycom02g25220

Protein of unknown function (DUF2462)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014444
Physical Location & Seq
Forward (+)
23242193 .. 23242597
405 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g25220.1

Sequence Viewer

Length: 189 bp
ATGACACAGAAAGGGAAGCTGTTCAAGGGGCAGCAGAAGAGGAAGACGATTCCTCCCAACCGCCATGGAAAAATGACTCAAATTCGCAAAGGCAAGCGAGTAATTAAGCCTTCGAAGGTCACCGGTGACATGGATTCCGATCGGGCCGTGAAGTTGATTGAATTAAGAGTATTTAGTTGGGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2462

Protein Analysis

63

Amino Acids

7.15

Weight (kDa)

11.47

Isoelectric Point (pI)

21.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52040
fragaria_vesca FvH4_7g01820
malus_domestica MD02G1300200.v1.1 MD07G1024700.v1.1
prunus_persica Prupe.2G024400_v2.0.a1
pyrus_communis pycom02g25220
rosa_chinensis RchiOBHm_Chr1g0318451
rosa_multiflora Rmu_sc0004803.1_g000001
rosa_roxburghii Rroxscaffold_4G00329240
rosa_rugosa Rorug01G0021400
rosa_samantha Rh1AG033500 Rh1BG029500 Rh1CG031800 Rh1CG033200 Rh1DG037300 Rh1DG037700
rosa_wichuraiana Rw1G002680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 81
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 2 cut(s) 25, 161
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 81
AsiGI ACCGGT 1 cut(s) 122
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 112, 137
AsuII TTCGAA 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse118I RCCGGY 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 113
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 64
BstEII GGTNACC 1 cut(s) 118
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 142
BstPI GGTNACC 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 144
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 2 cut(s) 65, 130
CviJI RGCY 3 cut(s) 19, 109, 146
CviKI_1 RGCY 3 cut(s) 19, 109, 146
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 68, 133
FaiI YATR 2 cut(s) 66, 131
FatI CATG 2 cut(s) 64, 129
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 68, 133
HinfI GANTC 3 cut(s) 49, 76, 134
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 112, 137
Hpy188I TCNGA 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 109, 120
Hsp92II CATG 2 cut(s) 68, 133
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 118, 125
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 49, 55
MluCI AATT 3 cut(s) 81, 102, 161
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 33, 63
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 2 cut(s) 105, 164
MspI CCGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 64
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 68, 133
NmuCI GTSAC 2 cut(s) 118, 125
NspV TTCGAA 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 49, 134
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 1 cut(s) 33
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 144
PvuI CGATCG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 105, 164
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 70
SetI ASST 2 cut(s) 21, 120
SfuI TTCGAA 1 cut(s) 113
SgeI CNNG 8 cut(s) 37, 77, 106, 110, 135, 142, 155, 160
SgrAI CRCCGGYG 1 cut(s) 122
Sse9I AATT 3 cut(s) 81, 102, 161
SsiI CCGC 1 cut(s) 61
StyI CCWWGG 1 cut(s) 64
TaqI TCGA 1 cut(s) 113
TasI AATT 3 cut(s) 81, 102, 161
TfiI GAWTC 2 cut(s) 49, 134
Tru1I TTAA 2 cut(s) 105, 164
Tru9I TTAA 2 cut(s) 105, 164
TseFI GTSAC 2 cut(s) 118, 125
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 2 cut(s) 118, 125
XapI RAATTY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.