FvH4_7g01820

Protein of unknown function (DUF2462)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014444
Physical Location & Seq
Reverse (-)
2191949 .. 2193049
1101 bp
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UTR
Exon/CDS
Intron
FvH4_7g01820.t1

Sequence Viewer

Length: 267 bp
ATGACACAGAAGGCGACGCAATTCAAAGGGCAGCAGAAGAGGAAGACGATTCCTCCGAACCGCCATGGGAAGAGCGTTCAAACTCGTAAAGGGAAGCGCAACGTGAAGCCGGCTAAGTTCACCAAGGACATGGACACCGATCGGGAGATAACAAAGTTCATAAACCACTGCAATGAGGTGAAGGCAGCCACTGCTGCAAACAAAGAAGGCGGCCAACTGAGTATTGTCAAAAATCCTCCAGAGTCAGATAGTGGTGGAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2462

Protein Analysis

89

Amino Acids

9.79

Weight (kDa)

10.33

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2462 PF09495 1 - 79 3.8e-10 Protein of unknown function (DUF2462)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52040
fragaria_vesca FvH4_7g01820
malus_domestica MD02G1300200.v1.1 MD07G1024700.v1.1
prunus_persica Prupe.2G024400_v2.0.a1
pyrus_communis pycom02g25220
rosa_chinensis RchiOBHm_Chr1g0318451
rosa_multiflora Rmu_sc0004803.1_g000001
rosa_roxburghii Rroxscaffold_4G00329240
rosa_rugosa Rorug01G0021400
rosa_samantha Rh1AG033500 Rh1BG029500 Rh1CG031800 Rh1CG033200 Rh1DG037300 Rh1DG037700
rosa_wichuraiana Rw1G002680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 61, 210
AcoI YGGCCR 1 cut(s) 211
AgsI TTSAA 2 cut(s) 25, 80
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 3 cut(s) 31, 185, 194
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 112, 190
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 43, 181, 197
BisI GCNGC 4 cut(s) 32, 186, 195, 211
BlsI GCNGC 4 cut(s) 33, 187, 196, 212
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 64, 123
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse118I RCCGGY 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 64, 123
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 43, 181, 197
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 2 cut(s) 61, 210
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 64, 123
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 64, 123
Bst6I CTCTTC 2 cut(s) 32, 65
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 114, 218
BstDSI CCRYGG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 191, 194
BstV1I GCAGC 3 cut(s) 43, 181, 197
BstV2I GAAGAC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 64
BtsI GCAGTG 2 cut(s) 166, 189
BtsIMutI CAGTG 2 cut(s) 166, 189
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 109
CseI GACGC 1 cut(s) 25
CviAII CATG 2 cut(s) 65, 130
CviJI RGCY 4 cut(s) 109, 113, 188, 213
CviKI_1 RGCY 4 cut(s) 109, 113, 188, 213
DdeI CTNAG 2 cut(s) 114, 218
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 32, 65
EarI CTCTTC 2 cut(s) 32, 65
Eco130I CCWWGG 2 cut(s) 64, 123
EcoT14I CCWWGG 2 cut(s) 64, 123
ErhI CCWWGG 2 cut(s) 64, 123
FaeI CATG 2 cut(s) 68, 133
FaiI YATR 3 cut(s) 66, 131, 161
FatI CATG 2 cut(s) 64, 129
Fnu4HI GCNGC 4 cut(s) 32, 186, 195, 211
Fsp4HI GCNGC 4 cut(s) 32, 186, 195, 211
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 32, 186, 195, 211
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 99
Hin1II CATG 2 cut(s) 68, 133
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 49, 242
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 112, 190
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 57, 247
Hpy188III TCNNGA 2 cut(s) 143, 239
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 4, 175, 200
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 171, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 194
HpyF3I CTNAG 2 cut(s) 114, 218
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 68, 133
HspAI GCGC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 65
LpnPI CCDG 2 cut(s) 123, 252
Lsp1109I GCAGC 3 cut(s) 43, 181, 197
MaeII ACGT 1 cut(s) 102
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 49, 55, 82
MluCI AATT 1 cut(s) 20
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 33, 63, 169, 246
MroNI GCCGGC 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 191, 194
NaeI GCCGGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 64
NdeII GATC 1 cut(s) 139
NgoMIV GCCGGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 68, 133
PciSI GCTCTTC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 4 cut(s) 33, 187, 196, 212
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 191
PvuI CGATCG 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 65
SatI GCNGC 4 cut(s) 32, 186, 195, 211
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 251
SetI ASST 2 cut(s) 105, 180
SgeI CNNG 8 cut(s) 77, 96, 115, 122, 136, 142, 155, 251
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 20
SsiI CCGC 2 cut(s) 61, 210
StyI CCWWGG 2 cut(s) 64, 123
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 20
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 2 cut(s) 173, 196
TseI GCWGC 3 cut(s) 31, 185, 194
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 2 cut(s) 173, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.