Rh1AG033500

Protein of unknown function (DUF2462)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014444
Physical Location & Seq
Reverse (-)
5944360 .. 5945224
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG033500.1

Sequence Viewer

Length: 267 bp
ATGACGCAGAAGGCGACGCAATTCAAAGGGCAGCAGAAGAGGAAAACAATACCTCCGAACCGCCATGGAAAGAGCGTTCAAACTCGCAAGGGGAAGCGAAACGTGAAGCCCGCTAAGTTCACCAAGGACATGGACGCCGATAGGGAGATAACAAAGTTCATAAACCACTGCAATGAGGTGAAGGCGGCCACTGCTGCAAACAAAGAAGGTGGCCAACTAAGTATTGTCAAATCAGCTCCAGAGTCGGATAATGGTGGAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2462

Protein Analysis

88

Amino Acids

9.74

Weight (kDa)

10.29

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2462 PF09495 1 - 79 9.1e-10 Protein of unknown function (DUF2462)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52040
fragaria_vesca FvH4_7g01820
malus_domestica MD02G1300200.v1.1 MD07G1024700.v1.1
prunus_persica Prupe.2G024400_v2.0.a1
pyrus_communis pycom02g25220
rosa_chinensis RchiOBHm_Chr1g0318451
rosa_multiflora Rmu_sc0004803.1_g000001
rosa_roxburghii Rroxscaffold_4G00329240
rosa_rugosa Rorug01G0021400
rosa_samantha Rh1AG033500 Rh1BG029500 Rh1CG031800 Rh1CG033200 Rh1DG037300 Rh1DG037700
rosa_wichuraiana Rw1G002680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 61, 111, 185
AcoI YGGCCR 2 cut(s) 186, 211
AcyI GRCGYC 1 cut(s) 135
AgsI TTSAA 2 cut(s) 25, 80
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 186, 211
ApeKI GCWGC 2 cut(s) 31, 194
AsuHPI GGTGA 2 cut(s) 112, 190
BalI TGGCCA 1 cut(s) 213
BbvI GCAGC 2 cut(s) 43, 181
BisI GCNGC 3 cut(s) 32, 186, 195
BlsI GCNGC 3 cut(s) 33, 187, 196
BpmI CTGGAG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 64, 123
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse3DI GCAATG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 64, 123
BseMI GCAATG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 43, 181
BshFI GGCC 2 cut(s) 188, 213
BsnI GGCC 2 cut(s) 188, 213
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 3 cut(s) 61, 111, 185
BspANI GGCC 2 cut(s) 188, 213
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 64, 123
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 64, 123
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 114, 218
BstDSI CCRYGG 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 191, 194
BstV1I GCAGC 2 cut(s) 43, 181
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 188, 213
BtgI CCRYGG 1 cut(s) 64
BtsI GCAGTG 2 cut(s) 166, 189
BtsIMutI CAGTG 2 cut(s) 166, 189
Cac8I GCNNGC 1 cut(s) 111
CseI GACGC 3 cut(s) 13, 25, 143
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 2 cut(s) 65, 130
CviJI RGCY 4 cut(s) 109, 188, 213, 236
CviKI_1 RGCY 4 cut(s) 109, 188, 213, 236
DdeI CTNAG 2 cut(s) 114, 218
EaeI YGGCCR 2 cut(s) 186, 211
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 64, 123
EcoT14I CCWWGG 2 cut(s) 64, 123
ErhI CCWWGG 2 cut(s) 64, 123
FaeI CATG 2 cut(s) 68, 133
FaiI YATR 3 cut(s) 66, 131, 161
FatI CATG 2 cut(s) 64, 129
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 32, 186, 195
Fsp4HI GCNGC 3 cut(s) 32, 186, 195
GluI GCNGC 3 cut(s) 32, 186, 195
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 188, 213
HgaI GACGC 3 cut(s) 13, 25, 143
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 68, 133
HinfI GANTC 1 cut(s) 242
HphI GGTGA 2 cut(s) 112, 190
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 57, 247
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 4, 175, 200
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 171, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 194
HpyF3I CTNAG 2 cut(s) 114, 218
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 68, 133
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 1 cut(s) 252
Lsp1109I GCAGC 2 cut(s) 43, 181
MaeII ACGT 1 cut(s) 102
MboII GAAGA 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 3 cut(s) 33, 63, 169
Mox20I TGGCCA 1 cut(s) 213
MscI TGGCCA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 191, 194
NcoI CCATGG 1 cut(s) 64
NlaIII CATG 2 cut(s) 68, 133
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PkrI GCNGC 3 cut(s) 33, 187, 196
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 171
SatI GCNGC 3 cut(s) 32, 186, 195
SchI GAGTC 1 cut(s) 251
SetI ASST 5 cut(s) 55, 105, 180, 211, 238
SgeI CNNG 8 cut(s) 77, 96, 100, 115, 122, 136, 142, 251
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 20
SsiI CCGC 3 cut(s) 61, 111, 185
StyI CCWWGG 2 cut(s) 64, 123
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 20
TauI GCSGC 1 cut(s) 188
TscAI CASTG 2 cut(s) 173, 196
TseI GCWGC 2 cut(s) 31, 194
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 2 cut(s) 173, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.