Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015308

Physical Location & Seq

Genomic Coordinates Forward (+)

19639549 .. 19640710

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGACTTCTCTCTCCGTTTCTAGATTCATGTCCTCCTCCGCCACCGTTATCTCCGTCGCTAAGCCGTTACTTTCCCCCACCGTATCCTTCACCGCGCCGCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCTCTCAAATTCCGCAACCGCCGCACCAATTCCGCCTCCGCCACCACCAGATCCTTCGCTACGACACCCGTCACCGCCTCCATTTCCGTCGGAGACAAGCTCCCAGACTCCACTCTCTCCTACCTCGATCCATCCACCGGAGACGTCAAAACAGTAACCGTCTCATCCCTAACCGCCGGGAAGAAAACAATCCTATTCGCCGTTCCCGGCGCATTCACACCAACATGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCCGGAGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTCGTGATGGAAGCGTGGAGGAAAGATCTTGGAATTAACGATGAGGTAATGTTGCTATCCGATGGAAATGGCGAATTCACAGGGAAGCTTGGTGTTGAATTGGATTTGAGGGATAAGCCTGTGGGACTTGGAGTTAGGTCAAGGAGATATGCGATTTTGGCTGATGATGGTGTTGTGAAAGTTCTGAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0030312 GO:0031967 GO:0031975 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

234

Amino Acids

24.68

Weight (kDa)

9.12

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	75 - 231	1.6e-32	Redoxin
AhpC-TSA	PF00578	75 - 212	8.4e-16	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52960
fragaria_vesca	FvH4_6g17760
malus_domestica	MD12G1016500.v1.1 MD14G1014500.v1.1
prunus_persica	Prupe.7G118900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471981
rosa_laevigata	RLG00000024114
rosa_multiflora	Rmu_sc0000090.1_g000024
rosa_roxburghii	Rroxscaffold_6G00409380
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172900 Rh3BG198400 Rh3CG189500 Rh3CG196900 Rh3DG175900
rosa_wichuraiana	Rw3G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	103
AccII	CGCG	2 cut(s)	98, 455
AclWI	GGATC	2 cut(s)	180, 257
AcsI	RAATTY	2 cut(s)	143, 530
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	373, 453
AgsI	TTSAA	2 cut(s)	554, 650
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	235, 544, 698
AluI	AGCT	3 cut(s)	235, 544, 698
Alw26I	GTCTC	3 cut(s)	222, 270, 301
AlwI	GGATC	2 cut(s)	180, 257
ApoI	RAATTY	2 cut(s)	143, 530
AspLEI	GCGC	2 cut(s)	100, 347
AsuC2I	CCSGG	2 cut(s)	313, 342
AsuHPI	GGTGA	2 cut(s)	85, 199
BbvCI	CCTCAGC	1 cut(s)	681
BccI	CCATC	4 cut(s)	274, 457, 512, 617
BceAI	ACGGC	2 cut(s)	52, 320
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	2 cut(s)	97, 400
BcnI	CCSGG	2 cut(s)	313, 342
BcoDI	GTCTC	3 cut(s)	222, 270, 301
BfaI	CTAG	1 cut(s)	24
BfuI	GTATCC	2 cut(s)	97, 400
BglII	AGATCT	2 cut(s)	410, 481
BisI	GCNGC	2 cut(s)	101, 157
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	2 cut(s)	102, 158
Bme1390I	CCNGG	3 cut(s)	313, 342, 381
BmgBI	CACGTC	1 cut(s)	376
BmrFI	CCNGG	3 cut(s)	313, 342, 381
BmsI	GCATC	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	313, 342
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	266, 299
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	421, 672
BseRI	GAGGAG	1 cut(s)	28
Bsh1236I	CGCG	2 cut(s)	98, 455
BshVI	ATCGAT	1 cut(s)	423
BsiSI	CCGG	4 cut(s)	273, 312, 342, 399
BslFI	GGGAC	2 cut(s)	362, 594
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	3 cut(s)	222, 270, 301
BsmBI	CGTCTC	2 cut(s)	270, 301
BsmFI	GGGAC	2 cut(s)	362, 594
BsmI	GAATGC	1 cut(s)	347
Bsp143I	GATC	4 cut(s)	185, 262, 410, 481
Bsp1720I	GCTNAGC	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	420, 673
BspDI	ATCGAT	1 cut(s)	423
BspFNI	CGCG	2 cut(s)	98, 455
BspPI	GGATC	2 cut(s)	180, 257
BsrBI	CCGCTC	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	185, 262, 410, 481
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	49, 85, 289, 295
BstACI	GRCGYC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	63, 407, 681
BstF5I	GGATG	2 cut(s)	266, 299
BstFNI	CGCG	2 cut(s)	98, 455
BstHHI	GCGC	2 cut(s)	100, 347
BstKTI	GATC	4 cut(s)	188, 265, 413, 484
BstMAI	GTCTC	3 cut(s)	222, 270, 301
BstMBI	GATC	4 cut(s)	185, 262, 410, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 614
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	363, 438
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	311, 340, 379
BstUI	CGCG	2 cut(s)	98, 455
BstX2I	RGATCY	3 cut(s)	185, 410, 481
BstYI	RGATCY	3 cut(s)	185, 410, 481
Bsu15I	ATCGAT	1 cut(s)	423
BsuI	GTATCC	2 cut(s)	97, 400
BsuTUI	ATCGAT	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	266, 299
CfoI	GCGC	2 cut(s)	100, 347
ClaI	ATCGAT	1 cut(s)	423
CseI	GACGC	1 cut(s)	461
CviAII	CATG	3 cut(s)	31, 360, 435
CviJI	RGCY	7 cut(s)	67, 235, 398, 544, 574, 617, 698
CviKI_1	RGCY	7 cut(s)	67, 235, 398, 544, 574, 617, 698
DdeI	CTNAG	3 cut(s)	63, 407, 681
DpnI	GATC	4 cut(s)	187, 264, 412, 483
DpnII	GATC	4 cut(s)	185, 262, 410, 481
EciI	GGCGGA	3 cut(s)	31, 157, 163
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	379
Esp3I	CGTCTC	2 cut(s)	270, 301
FaeI	CATG	3 cut(s)	34, 363, 438
FaiI	YATR	5 cut(s)	32, 361, 436, 606, 689
FaqI	GGGAC	2 cut(s)	362, 594
FatI	CATG	3 cut(s)	30, 359, 434
Fnu4HI	GCNGC	2 cut(s)	101, 157
FokI	GGATG	2 cut(s)	253, 286
Fsp4HI	GCNGC	2 cut(s)	101, 157
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	2 cut(s)	99, 346
GluI	GCNGC	2 cut(s)	101, 157
HapII	CCGG	4 cut(s)	273, 312, 342, 399
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	2 cut(s)	100, 347
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	34, 363, 438
Hin6I	GCGC	2 cut(s)	98, 345
HinP1I	GCGC	2 cut(s)	98, 345
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	4 cut(s)	27, 242, 384, 643
HpaII	CCGG	4 cut(s)	273, 312, 342, 399
HphI	GGTGA	2 cut(s)	85, 199
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	227, 410, 517, 642, 704
Hpy188III	TCNNGA	3 cut(s)	24, 460, 647
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	3 cut(s)	62, 227, 455
HpyAV	CCTTC	4 cut(s)	100, 118, 199, 647
HpyCH4III	ACNGT	4 cut(s)	49, 85, 289, 295
HpyCH4IV	ACGT	2 cut(s)	279, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 614
HpyF3I	CTNAG	3 cut(s)	63, 407, 681
HpySE526I	ACGT	2 cut(s)	279, 375
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	34, 363, 438
HspAI	GCGC	2 cut(s)	98, 345
Kzo9I	GATC	4 cut(s)	185, 262, 410, 481
LmnI	GCTCC	2 cut(s)	130, 240
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	2 cut(s)	279, 375
MaeIII	GTNAC	3 cut(s)	69, 205, 289
MalI	GATC	4 cut(s)	187, 264, 412, 483
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	4 cut(s)	185, 262, 410, 481
MboII	GAAGA	2 cut(s)	328, 662
MflI	RGATCY	3 cut(s)	185, 410, 481
MluCI	AATT	5 cut(s)	143, 163, 489, 530, 554
MluI	ACGCGT	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	205
MseI	TTAA	2 cut(s)	492, 693
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	4 cut(s)	273, 312, 342, 399
MspR9I	CCNGG	3 cut(s)	313, 342, 381
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	2 cut(s)	98, 455
MwoI	GCNNNNNNNGC	2 cut(s)	156, 614
NciI	CCSGG	2 cut(s)	313, 342
NdeII	GATC	4 cut(s)	185, 262, 410, 481
NlaIII	CATG	3 cut(s)	34, 363, 438
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	363, 438
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	27, 384, 643
PkrI	GCNGC	2 cut(s)	102, 158
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PshAI	GACNNNNGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PsuI	RGATCY	3 cut(s)	185, 410, 481
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	492, 693
SatI	GCNGC	2 cut(s)	101, 157
Sau3AI	GATC	4 cut(s)	185, 262, 410, 481
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	313, 342, 381
SetI	ASST	9 cut(s)	237, 261, 282, 378, 504, 546, 596, 661, 700
SfaNI	GCATC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	143, 163, 489, 530, 554
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	311, 340, 379
TaaI	ACNGT	4 cut(s)	49, 85, 289, 295
TaiI	ACGT	2 cut(s)	282, 378
TaqI	TCGA	2 cut(s)	261, 423
TasI	AATT	5 cut(s)	143, 163, 489, 530, 554
TauI	GCSGC	2 cut(s)	103, 159
TfiI	GAWTC	3 cut(s)	27, 384, 643
Tru1I	TTAA	2 cut(s)	492, 693
Tru9I	TTAA	2 cut(s)	492, 693
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	4 cut(s)	7, 46, 211, 433
XapI	RAATTY	2 cut(s)	143, 530
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	2 cut(s)	363, 438
XspI	CTAG	1 cut(s)	24
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.