Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015308

Physical Location & Seq

Genomic Coordinates Forward (+)

15612519 .. 15613205

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG175900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAGCCTCTCTCACCATCTCAAGGCTCCTCGCAGCCCCCAGATCCCTCTCCCTCTCCTCCACCACAACCAAAGCCTCCCTCTTCTCCGCCAAACCCTTCTCTTCAAAATCCTCCTACGCCCCTTTCTCTCTCAAACACCAGACCCACCCCAAACCCCTCAAATTCTCCACCACCGCCGCCAAACCCATCTCCGCCACCATCTCCGTCGGCGACAAGCTCCCAGAGTCCACCCTCTCCTACCTCGACGCCGCCGGTGATGTCCAGACCGTCACTGTCTCTGAGCTGACCAAGTCCAAGAAGGCCGTCCTCTTCGCCGTCCCCGGCGCCTTCACCCCCACCTGTTCCCAGAAGCACGTTCCCGGATTCGTGGAGAAGTCCGCCGAGCTCAAGGCCAAGGGGGTCGACACCATCGCTTGCATTTCGGTCAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCAAGATCGGAGACGAGGTACTTTTGTTGTCCGATGGGAATGGGAACTTCACCAAGGCCATCGGGGTCGAGCTCGATTTGAGTGATAAGCCGGTGGGATTGGGAGTCAGGTCCAGAAGGTACTCGCTTTTGGCTGAAGATGGAGTCGTGAAGGTGTTGAACTTGGAGGAAGGTGGTGCTTTCACTTCCAGTGGAGCTGATGATATTCTCAAAGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0030312 GO:0031967 GO:0031975 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

228

Amino Acids

23.96

Weight (kDa)

9.11

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	70 - 224	6e-36	Redoxin
AhpC-TSA	PF00578	70 - 206	7.5e-15	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52960
fragaria_vesca	FvH4_6g17760
malus_domestica	MD12G1016500.v1.1 MD14G1014500.v1.1
prunus_persica	Prupe.7G118900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471981
rosa_laevigata	RLG00000024114
rosa_multiflora	Rmu_sc0000090.1_g000024
rosa_roxburghii	Rroxscaffold_6G00409380
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172900 Rh3BG198400 Rh3CG189500 Rh3CG196900 Rh3DG175900
rosa_wichuraiana	Rw3G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	6 cut(s)	90, 177, 180, 195, 252, 381
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	3 cut(s)	249, 327, 435
AfaI	GTAC	2 cut(s)	486, 587
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	108, 625
AluBI	AGCT	5 cut(s)	220, 286, 388, 538, 662
AluI	AGCT	5 cut(s)	220, 286, 388, 538, 662
Alw21I	GWGCWC	2 cut(s)	390, 540
Alw26I	GTCTC	2 cut(s)	283, 471
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	303, 393, 522
ApeKI	GCWGC	2 cut(s)	5, 35
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	576
AsuC2I	CCSGG	2 cut(s)	324, 363
AsuHPI	GGTGA	4 cut(s)	7, 269, 325, 508
AvaII	GGWCC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	390, 540
Bbv12I	GWGCWC	2 cut(s)	390, 540
BbvI	GCAGC	2 cut(s)	17, 47
BccI	CCATC	7 cut(s)	26, 197, 209, 419, 494, 533, 599
BceAI	ACGGC	2 cut(s)	290, 302
BcnI	CCSGG	2 cut(s)	324, 363
BcoDI	GTCTC	2 cut(s)	283, 471
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	4 cut(s)	6, 36, 180, 252
BlsI	GCNGC	4 cut(s)	7, 37, 181, 253
Bme1390I	CCNGG	2 cut(s)	324, 363
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	29, 328
BmrFI	CCNGG	2 cut(s)	324, 363
BpuEI	CTTGAG	3 cut(s)	7, 374, 452
BpuMI	CCSGG	2 cut(s)	324, 363
BsaHI	GRCGYC	3 cut(s)	249, 327, 435
BsaJI	CCNNGG	3 cut(s)	322, 396, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	2 cut(s)	254, 556
Bse1I	ACTGG	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	322, 396, 519
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	654
BseRI	GAGGAG	2 cut(s)	20, 49
BseXI	GCAGC	2 cut(s)	17, 47
BshFI	GGCC	3 cut(s)	305, 395, 524
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	390, 540
BsiSI	CCGG	4 cut(s)	255, 324, 363, 557
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	283, 471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	305, 395, 524
Bsp1286I	GDGCHC	2 cut(s)	390, 540
Bsp143I	GATC	2 cut(s)	44, 471
BspACI	CCGC	6 cut(s)	90, 177, 180, 195, 252, 381
BspANI	GGCC	3 cut(s)	305, 395, 524
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	29, 328
BspPI	GGATC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	254, 556
BsrI	ACTGG	1 cut(s)	654
BssAI	RCCGGY	2 cut(s)	254, 556
BssECI	CCNNGG	3 cut(s)	322, 396, 519
BssMI	GATC	2 cut(s)	44, 471
BssNI	GRCGYC	3 cut(s)	249, 327, 435
BssT1I	CCWWGG	2 cut(s)	396, 519
Bst4CI	ACNGT	2 cut(s)	271, 277
Bst6I	CTCTTC	3 cut(s)	89, 109, 317
BstACI	GRCGYC	3 cut(s)	249, 327, 435
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	47, 474
BstMAI	GTCTC	2 cut(s)	283, 471
BstMBI	GATC	2 cut(s)	44, 471
BstSCI	CCNGG	2 cut(s)	322, 361
BstV1I	GCAGC	2 cut(s)	17, 47
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	305, 395, 524
BtgZI	GCGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	273, 661
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	2 cut(s)	254, 556
Cfr13I	GGNCC	1 cut(s)	576
CseI	GACGC	2 cut(s)	257, 443
Csp6I	GTAC	2 cut(s)	485, 586
CviQI	GTAC	2 cut(s)	485, 586
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	2 cut(s)	46, 473
DpnII	GATC	2 cut(s)	44, 471
Eam1104I	CTCTTC	3 cut(s)	89, 109, 317
EarI	CTCTTC	3 cut(s)	89, 109, 317
EciI	GGCGGA	3 cut(s)	79, 184, 370
Ecl136II	GAGCTC	2 cut(s)	388, 538
Eco130I	CCWWGG	2 cut(s)	396, 519
Eco24I	GRGCYC	2 cut(s)	390, 540
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	2 cut(s)	388, 538
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	2 cut(s)	388, 538
EcoT14I	CCWWGG	2 cut(s)	396, 519
EcoT38I	GRGCYC	2 cut(s)	390, 540
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	2 cut(s)	396, 519
Esp3I	CGTCTC	1 cut(s)	471
FaqI	GGGAC	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	6, 36, 180, 252
FriOI	GRGCYC	2 cut(s)	390, 540
Fsp4HI	GCNGC	4 cut(s)	6, 36, 180, 252
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	6, 36, 180, 252
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	305, 395, 524
HapII	CCGG	4 cut(s)	255, 324, 363, 557
HgaI	GACGC	2 cut(s)	257, 443
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	3 cut(s)	249, 327, 435
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	406, 430
HindII	GTYRAC	2 cut(s)	406, 430
HinfI	GANTC	4 cut(s)	227, 366, 570, 609
HpaII	CCGG	4 cut(s)	255, 324, 363, 557
HphI	GGTGA	4 cut(s)	7, 269, 325, 508
Hpy166II	GTNNAC	3 cut(s)	231, 406, 430
Hpy188I	TCNGA	3 cut(s)	283, 476, 499
Hpy188III	TCNNGA	5 cut(s)	265, 442, 469, 579, 613
Hpy8I	GTNNAC	3 cut(s)	231, 406, 430
Hpy99I	CGWCG	3 cut(s)	212, 251, 437
HpyAV	CCTTC	9 cut(s)	109, 295, 340, 442, 448, 451, 576, 610, 629
HpyCH4III	ACNGT	2 cut(s)	271, 277
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	420
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	3 cut(s)	249, 327, 435
HspAI	GCGC	1 cut(s)	327
KasI	GGCGCC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	44, 471
LmnI	GCTCC	3 cut(s)	33, 225, 659
Lsp1109I	GCAGC	2 cut(s)	17, 47
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	46, 473
MboI	GATC	2 cut(s)	44, 471
MboII	GAAGA	4 cut(s)	76, 96, 304, 614
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	390, 540
MluCI	AATT	1 cut(s)	164
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	3 cut(s)	236, 579, 618
MspI	CCGG	4 cut(s)	255, 324, 363, 557
MspR9I	CCNGG	2 cut(s)	324, 363
NarI	GGCGCC	1 cut(s)	327
NciI	CCSGG	2 cut(s)	324, 363
NdeII	GATC	2 cut(s)	44, 471
NlaIV	GGNNCC	2 cut(s)	29, 328
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	4 cut(s)	7, 37, 181, 253
PleI	GAGTC	3 cut(s)	235, 578, 617
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	3 cut(s)	235, 578, 617
Psp124BI	GAGCTC	2 cut(s)	390, 540
PspN4I	GGNNCC	2 cut(s)	29, 328
PspPI	GGNCC	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	292
RsaI	GTAC	2 cut(s)	486, 587
RsaNI	GTAC	2 cut(s)	485, 586
SacI	GAGCTC	2 cut(s)	390, 540
SalI	GTCGAC	1 cut(s)	404
SatI	GCNGC	4 cut(s)	6, 36, 180, 252
Sau3AI	GATC	2 cut(s)	44, 471
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	3 cut(s)	236, 579, 618
ScrFI	CCNGG	2 cut(s)	324, 363
SduI	GDGCHC	2 cut(s)	390, 540
SfoI	GGCGCC	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	3 cut(s)	22, 389, 467
SmoI	CTYRAG	3 cut(s)	22, 389, 467
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	6 cut(s)	90, 177, 180, 195, 252, 381
SspDI	GGCGCC	1 cut(s)	326
SstI	GAGCTC	2 cut(s)	390, 540
StyD4I	CCNGG	2 cut(s)	322, 361
StyI	CCWWGG	2 cut(s)	396, 519
TaaI	ACNGT	2 cut(s)	271, 277
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	4 cut(s)	246, 405, 534, 540
TaqII	GACCGA	1 cut(s)	415
TasI	AATT	1 cut(s)	164
TauI	GCSGC	2 cut(s)	182, 254
TfiI	GAWTC	1 cut(s)	366
TscAI	CASTG	2 cut(s)	280, 661
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	5, 35
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	2 cut(s)	280, 661
Tth111I	GACNNNGTC	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.