Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015308

Physical Location & Seq

Genomic Coordinates Forward (+)

32059971 .. 32060672

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGCCTCTCTCACCATCTCAAGGCTCCTCGCAGCCCCCAGATCCCTCTCCCTCTCCTCCACCGCCACCGCCACCGCCACAACCAAAGCCTCTCTCTTCTCCGCCAAACCCTTCTCTTCAAAATCCTCCTACGCCCCTTTCTCTCTCAAACACCACACCCACCCCAAACCCCTCAAGTTCTCCACCTCCGCCGCAAAACCCATCTCCGCCACCATCTCCGTCGGCGACAAGCTCCCAGAGTCCACCCTCTCCTACCTCGACGCCGCCGGCGACGTCCAGACCGTCACTGTCTCTGAGCTGACCAAGTCCAAGAAGGCCGTCTTCTTCGCCGTCCCCGGCGCCTTCACCCCCACCTGTTCCCAGAAGCACGTTCCCGGATTCGTGGAGAAGTCGGCCGAGCTCAAGGCCAAGGGGGTCGACACCATCGCTTGCATTTCGGTCAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAGTCTCAAGATCGGAGACGAGGTGCTTTTGTTGTCCGATGGGAATGGGAACTTCACCAAGGCCATCGGGGTCGAGCTCGATTTGAGTGATAAGCCGGTGGGATTGGGAGTCAGGTCCAGAAGGTACTCGCTTTTGGCTGAAGATGGAGTCGTGAAGGTGTTGAACTTGGAGGAAGGTGGTGCTTTCACTTCCAGTGGAGCTGATGATATTCTCAAAGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0030312 GO:0031967 GO:0031975 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

234

Amino Acids

24.38

Weight (kDa)

9.11

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	75 - 229	3.1e-35	Redoxin
AhpC-TSA	PF00578	75 - 211	3.1e-14	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52960
fragaria_vesca	FvH4_6g17760
malus_domestica	MD12G1016500.v1.1 MD14G1014500.v1.1
prunus_persica	Prupe.7G118900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471981
rosa_laevigata	RLG00000024114
rosa_multiflora	Rmu_sc0000090.1_g000024
rosa_roxburghii	Rroxscaffold_6G00409380
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172900 Rh3BG198400 Rh3CG189500 Rh3CG196900 Rh3DG175900
rosa_wichuraiana	Rw3G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	8 cut(s)	66, 72, 78, 105, 192, 195, 210, 267
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	4 cut(s)	264, 276, 342, 450
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	123, 640
AluBI	AGCT	6 cut(s)	235, 301, 403, 553, 677, 695
AluI	AGCT	6 cut(s)	235, 301, 403, 553, 677, 695
Alw21I	GWGCWC	2 cut(s)	405, 555
Alw26I	GTCTC	3 cut(s)	298, 485, 486
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	4 cut(s)	318, 396, 408, 537
ApeKI	GCWGC	2 cut(s)	5, 35
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	591
AsuC2I	CCSGG	2 cut(s)	339, 378
AsuHPI	GGTGA	3 cut(s)	7, 340, 523
AvaII	GGWCC	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	405, 555
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	405, 555
BbvI	GCAGC	2 cut(s)	17, 47
BccI	CCATC	7 cut(s)	26, 212, 224, 434, 509, 548, 614
BceAI	ACGGC	2 cut(s)	305, 317
BcnI	CCSGG	2 cut(s)	339, 378
BcoDI	GTCTC	3 cut(s)	298, 485, 486
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	4 cut(s)	6, 36, 195, 267
BlsI	GCNGC	4 cut(s)	7, 37, 196, 268
Bme1390I	CCNGG	2 cut(s)	339, 378
Bme18I	GGWCC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	29, 343
BmrFI	CCNGG	2 cut(s)	339, 378
BpiI	GAAGAC	1 cut(s)	316
BpuEI	CTTGAG	4 cut(s)	7, 161, 389, 467
BpuMI	CCSGG	2 cut(s)	339, 378
BsaHI	GRCGYC	4 cut(s)	264, 276, 342, 450
BsaJI	CCNNGG	3 cut(s)	337, 411, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	2 cut(s)	269, 571
Bse1I	ACTGG	1 cut(s)	669
BseDI	CCNNGG	3 cut(s)	337, 411, 534
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	2 cut(s)	20, 49
BseX3I	CGGCCG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	17, 47
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	4 cut(s)	320, 398, 410, 539
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	405, 555
BsiSI	CCGG	4 cut(s)	270, 339, 378, 572
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	298, 485, 486
BsmBI	CGTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	320, 398, 410, 539
Bsp1286I	GDGCHC	2 cut(s)	405, 555
Bsp143I	GATC	2 cut(s)	44, 486
BspACI	CCGC	8 cut(s)	66, 72, 78, 105, 192, 195, 210, 267
BspANI	GGCC	4 cut(s)	320, 398, 410, 539
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	29, 343
BspPI	GGATC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	341
BsrFI	RCCGGY	2 cut(s)	269, 571
BsrI	ACTGG	1 cut(s)	669
BssAI	RCCGGY	2 cut(s)	269, 571
BssECI	CCNNGG	3 cut(s)	337, 411, 534
BssMI	GATC	2 cut(s)	44, 486
BssNI	GRCGYC	4 cut(s)	264, 276, 342, 450
BssT1I	CCWWGG	2 cut(s)	411, 534
Bst4CI	ACNGT	2 cut(s)	286, 292
Bst6I	CTCTTC	2 cut(s)	104, 124
BstACI	GRCGYC	4 cut(s)	264, 276, 342, 450
BstC8I	GCNNGC	2 cut(s)	271, 433
BstDEI	CTNAG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	47, 489
BstMAI	GTCTC	3 cut(s)	298, 485, 486
BstMBI	GATC	2 cut(s)	44, 486
BstMCI	CGRYCG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	337, 376
BstV1I	GCAGC	2 cut(s)	17, 47
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	396
BsuRI	GGCC	4 cut(s)	320, 398, 410, 539
BtgZI	GCGATG	1 cut(s)	412
BtsIMutI	CAGTG	2 cut(s)	288, 676
Cac8I	GCNNGC	2 cut(s)	271, 433
CfoI	GCGC	1 cut(s)	344
Cfr10I	RCCGGY	2 cut(s)	269, 571
Cfr13I	GGNCC	1 cut(s)	591
CseI	GACGC	2 cut(s)	272, 458
Csp6I	GTAC	1 cut(s)	601
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	297
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	2 cut(s)	46, 488
DpnII	GATC	2 cut(s)	44, 486
EaeI	YGGCCR	1 cut(s)	396
EagI	CGGCCG	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	104, 124
EarI	CTCTTC	2 cut(s)	104, 124
EciI	GGCGGA	3 cut(s)	94, 181, 199
Ecl136II	GAGCTC	2 cut(s)	403, 553
EclXI	CGGCCG	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	411, 534
Eco24I	GRGCYC	2 cut(s)	405, 555
Eco47I	GGWCC	1 cut(s)	591
Eco52I	CGGCCG	1 cut(s)	396
Eco53kI	GAGCTC	2 cut(s)	403, 553
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	2 cut(s)	403, 553
EcoT14I	CCWWGG	2 cut(s)	411, 534
EcoT38I	GRGCYC	2 cut(s)	405, 555
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
ErhI	CCWWGG	2 cut(s)	411, 534
Esp3I	CGTCTC	1 cut(s)	486
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	6, 36, 195, 267
FriOI	GRGCYC	2 cut(s)	405, 555
Fsp4HI	GCNGC	4 cut(s)	6, 36, 195, 267
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	4 cut(s)	6, 36, 195, 267
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	4 cut(s)	320, 398, 410, 539
HapII	CCGG	4 cut(s)	270, 339, 378, 572
HgaI	GACGC	2 cut(s)	272, 458
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	4 cut(s)	264, 276, 342, 450
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	2 cut(s)	421, 445
HindII	GTYRAC	2 cut(s)	421, 445
HinfI	GANTC	5 cut(s)	242, 381, 478, 585, 624
HpaII	CCGG	4 cut(s)	270, 339, 378, 572
HphI	GGTGA	3 cut(s)	7, 340, 523
Hpy166II	GTNNAC	3 cut(s)	246, 421, 445
Hpy188I	TCNGA	3 cut(s)	298, 491, 514
Hpy188III	TCNNGA	5 cut(s)	280, 457, 484, 594, 628
Hpy8I	GTNNAC	3 cut(s)	246, 421, 445
Hpy99I	CGWCG	4 cut(s)	227, 266, 278, 452
HpyAV	CCTTC	9 cut(s)	124, 310, 355, 457, 463, 466, 591, 625, 644
HpyCH4III	ACNGT	2 cut(s)	286, 292
HpyCH4IV	ACGT	2 cut(s)	276, 372
HpyCH4V	TGCA	1 cut(s)	435
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	276, 372
Hsp92I	GRCGYC	4 cut(s)	264, 276, 342, 450
HspAI	GCGC	1 cut(s)	342
KasI	GGCGCC	1 cut(s)	341
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	44, 486
LmnI	GCTCC	3 cut(s)	33, 240, 674
Lsp1109I	GCAGC	2 cut(s)	17, 47
MaeII	ACGT	2 cut(s)	276, 372
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	46, 488
MboI	GATC	2 cut(s)	44, 486
MboII	GAAGA	5 cut(s)	91, 111, 316, 319, 629
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	405, 555
Mly113I	GGCGCC	1 cut(s)	342
MlyI	GAGTC	4 cut(s)	251, 487, 594, 633
MreI	CGCCGGCG	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	269
MspI	CCGG	4 cut(s)	270, 339, 378, 572
MspR9I	CCNGG	2 cut(s)	339, 378
NaeI	GCCGGC	1 cut(s)	271
NarI	GGCGCC	1 cut(s)	342
NciI	CCSGG	2 cut(s)	339, 378
NdeII	GATC	2 cut(s)	44, 486
NgoMIV	GCCGGC	1 cut(s)	269
NlaIV	GGNNCC	2 cut(s)	29, 343
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	3 cut(s)	270, 282, 453
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	381
PflFI	GACNNNGTC	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	7, 37, 196, 268
PleI	GAGTC	4 cut(s)	250, 486, 593, 632
PluTI	GGCGCC	1 cut(s)	345
PpsI	GAGTC	4 cut(s)	250, 486, 593, 632
Psp124BI	GAGCTC	2 cut(s)	405, 555
PspN4I	GGNNCC	2 cut(s)	29, 343
PspPI	GGNCC	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SacI	GAGCTC	2 cut(s)	405, 555
SalI	GTCGAC	1 cut(s)	419
SatI	GCNGC	4 cut(s)	6, 36, 195, 267
Sau3AI	GATC	2 cut(s)	44, 486
Sau96I	GGNCC	1 cut(s)	591
SchI	GAGTC	4 cut(s)	251, 487, 594, 633
ScrFI	CCNGG	2 cut(s)	339, 378
SduI	GDGCHC	2 cut(s)	405, 555
SfoI	GGCGCC	1 cut(s)	343
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	591
SmlI	CTYRAG	4 cut(s)	22, 176, 404, 482
SmoI	CTYRAG	4 cut(s)	22, 176, 404, 482
SsiI	CCGC	8 cut(s)	66, 72, 78, 105, 192, 195, 210, 267
SspDI	GGCGCC	1 cut(s)	341
SstI	GAGCTC	2 cut(s)	405, 555
StyD4I	CCNGG	2 cut(s)	337, 376
StyI	CCWWGG	2 cut(s)	411, 534
TaaI	ACNGT	2 cut(s)	286, 292
TaiI	ACGT	2 cut(s)	279, 375
TaqI	TCGA	4 cut(s)	261, 420, 549, 555
TaqII	GACCGA	1 cut(s)	430
TauI	GCSGC	2 cut(s)	197, 269
TfiI	GAWTC	1 cut(s)	381
TscAI	CASTG	2 cut(s)	295, 676
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	5, 35
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	295, 676
Tth111I	GACNNNGTC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.