Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015308

Physical Location & Seq

Genomic Coordinates Reverse (-)

1639840 .. 1641155

Gene Structure 1316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1016500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGCCTCCCTCACGATCTCAAGGCTCCTCACAGCCCCCAAGTCCCTCGCTTTCTCCACCACCACCGCCGCCGTCGCACCCAAAACATCTCTCTTCTCTCCCAAATCCTTCTCCTCCAAAATCTCCTACACCCCTCTCCCCCTCAAACACTCCCCCCGCCCAAAACCCCTCCTCCGCTTCTCCACCACCGCCTCCAAACCCATATCCGCCACCATCGCCGTCGGCGACAAGCTCCCCGAAGCCACCCTGTCCTATCTGGACGCCGCCGGCGACGTCCAGACCGTGACTGTCTCCGACCTCACCAAATCCAAGAAGGCCGTCCTCTTCGCCGTCCCCGGCGCCTTCACCCCGACCTGCTCCCAGAAACACGTCCCGGGATTCGTGGAAAAGTCGGGGGAGCTCAAGGCGAAGGGCGTCGAGACCATCGCCTGCATTGCGGTCAACGATGTCTTCGTGATCAAAGCGTGGAAGGAGAATCTCAACATCGGTGACGAGGTGCTGCTGCTGTCCGATGGGAACGGCGATTTCACGAGGGCGATCGGGGCGGAGCTCGATTTGAGCGATAAGCCGGTGGGGCTGGGCGTCAGGTCCAGAAGGTACTCGCTTTTGGCGGAGGATGGAGTTGTTAAGGTCTTGAATTTGGAGGAAGGCGGTGCCTTTACTTCCAGTGGAGCTGAGGACATTCTCAAAGTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0030312 GO:0031967 GO:0031975 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

234

Amino Acids

24.49

Weight (kDa)

8.98

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	75 - 229	5e-33	Redoxin
AhpC-TSA	PF00578	75 - 211	7.4e-15	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52960
fragaria_vesca	FvH4_6g17760
malus_domestica	MD12G1016500.v1.1 MD14G1014500.v1.1
prunus_persica	Prupe.7G118900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471981
rosa_laevigata	RLG00000024114
rosa_multiflora	Rmu_sc0000090.1_g000024
rosa_roxburghii	Rroxscaffold_6G00409380
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172900 Rh3BG198400 Rh3CG189500 Rh3CG196900 Rh3DG175900
rosa_wichuraiana	Rw3G016770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	365
AccB1I	GGYRCC	2 cut(s)	341, 656
AcsI	RAATTY	1 cut(s)	640
AcyI	GRCGYC	5 cut(s)	264, 276, 342, 417, 585
AfaI	GTAC	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	373
AluBI	AGCT	4 cut(s)	235, 403, 553, 677
AluI	AGCT	4 cut(s)	235, 403, 553, 677
Alw21I	GWGCWC	2 cut(s)	405, 555
Alw26I	GTCTC	2 cut(s)	298, 416
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	5, 502, 505
ApoI	RAATTY	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	591
AsuC2I	CCSGG	3 cut(s)	339, 377, 378
AsuHPI	GGTGA	3 cut(s)	295, 340, 503
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	591
BanI	GGYRCC	2 cut(s)	341, 656
BanII	GRGCYC	2 cut(s)	405, 555
BauI	CACGAG	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	2 cut(s)	405, 555
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	17, 489, 492
BccI	CCATC	4 cut(s)	224, 434, 509, 614
BceAI	ACGGC	5 cut(s)	59, 206, 305, 317, 538
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	3 cut(s)	339, 377, 378
BcoDI	GTCTC	2 cut(s)	298, 416
BfoI	RGCGCY	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	577
BisI	GCNGC	5 cut(s)	6, 72, 267, 503, 506
BlsI	GCNGC	5 cut(s)	7, 73, 268, 504, 507
Bme1390I	CCNGG	3 cut(s)	339, 377, 378
Bme18I	GGWCC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	3 cut(s)	29, 343, 658
BmrFI	CCNGG	3 cut(s)	339, 377, 378
BpiI	GAAGAC	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	7, 389
BpuMI	CCSGG	3 cut(s)	339, 377, 378
BsaHI	GRCGYC	5 cut(s)	264, 276, 342, 417, 585
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	337, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse118I	RCCGGY	2 cut(s)	269, 571
Bse1I	ACTGG	1 cut(s)	669
Bse3DI	GCAATG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	337, 376
BseGI	GGATG	1 cut(s)	625
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	3 cut(s)	20, 106, 164
BseXI	GCAGC	3 cut(s)	17, 489, 492
BseYI	CCCAGC	1 cut(s)	580
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	341, 656
BsiEI	CGRYCG	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	405, 555
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	4 cut(s)	270, 339, 377, 572
BslFI	GGGAC	3 cut(s)	31, 320, 359
BsmAI	GTCTC	2 cut(s)	298, 416
BsmFI	GGGAC	3 cut(s)	31, 320, 359
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	405, 555
Bsp143I	GATC	4 cut(s)	18, 459, 540, 696
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	3 cut(s)	29, 343, 658
BspMI	ACCTGC	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	341, 656
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	269, 571
BsrI	ACTGG	1 cut(s)	669
BssAI	RCCGGY	2 cut(s)	269, 571
BssECI	CCNNGG	2 cut(s)	337, 376
BssMI	GATC	4 cut(s)	18, 459, 540, 696
BssNI	GRCGYC	5 cut(s)	264, 276, 342, 417, 585
BssSI	CACGAG	1 cut(s)	532
Bst2BI	CACGAG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	286, 292
Bst6I	CTCTTC	2 cut(s)	101, 332
BstACI	GRCGYC	5 cut(s)	264, 276, 342, 417, 585
BstC8I	GCNNGC	2 cut(s)	271, 433
BstDEI	CTNAG	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	625
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	4 cut(s)	21, 462, 543, 699
BstMAI	GTCTC	2 cut(s)	298, 416
BstMBI	GATC	4 cut(s)	18, 459, 540, 696
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 218, 437, 545, 577
BstSCI	CCNGG	3 cut(s)	337, 375, 376
BstV1I	GCAGC	3 cut(s)	17, 489, 492
BstV2I	GAAGAC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	320
BtgZI	GCGATG	2 cut(s)	202, 412
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	271, 433
CfoI	GCGC	1 cut(s)	344
Cfr10I	RCCGGY	2 cut(s)	269, 571
Cfr13I	GGNCC	1 cut(s)	591
Cfr9I	CCCGGG	1 cut(s)	376
CseI	GACGC	3 cut(s)	272, 406, 574
Csp6I	GTAC	1 cut(s)	601
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	678
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	4 cut(s)	20, 461, 542, 698
DpnII	GATC	4 cut(s)	18, 459, 540, 696
Eam1104I	CTCTTC	2 cut(s)	101, 332
EarI	CTCTTC	2 cut(s)	101, 332
EciI	GGCGGA	3 cut(s)	199, 563, 629
Ecl136II	GAGCTC	2 cut(s)	403, 553
Eco24I	GRGCYC	2 cut(s)	405, 555
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	591
Eco53kI	GAGCTC	2 cut(s)	403, 553
Eco88I	CYCGRG	1 cut(s)	376
EcoICRI	GAGCTC	2 cut(s)	403, 553
EcoT38I	GRGCYC	2 cut(s)	405, 555
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
FaiI	YATR	1 cut(s)	206
FaqI	GGGAC	3 cut(s)	31, 320, 359
FauI	CCCGC	1 cut(s)	167
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	6, 72, 267, 503, 506
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	2 cut(s)	405, 555
Fsp4HI	GCNGC	5 cut(s)	6, 72, 267, 503, 506
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	5 cut(s)	6, 72, 267, 503, 506
GsaI	CCCAGC	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	4 cut(s)	270, 339, 377, 572
HgaI	GACGC	3 cut(s)	272, 406, 574
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	5 cut(s)	264, 276, 342, 417, 585
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	2 cut(s)	381, 478
HpaII	CCGG	4 cut(s)	270, 339, 377, 572
HphI	GGTGA	3 cut(s)	295, 340, 503
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	298, 514, 701
Hpy188III	TCNNGA	8 cut(s)	16, 260, 280, 421, 457, 532, 594, 637
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	4 cut(s)	80, 227, 278, 422
HpyAV	CCTTC	7 cut(s)	121, 310, 355, 406, 466, 591, 644
HpyCH4III	ACNGT	2 cut(s)	286, 292
HpyCH4IV	ACGT	2 cut(s)	276, 372
HpyCH4V	TGCA	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 218, 437, 545, 577
HpyF3I	CTNAG	1 cut(s)	678
HpySE526I	ACGT	2 cut(s)	276, 372
Hsp92I	GRCGYC	5 cut(s)	264, 276, 342, 417, 585
HspAI	GCGC	1 cut(s)	342
KasI	GGCGCC	1 cut(s)	341
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	18, 459, 540, 696
LmnI	GCTCC	6 cut(s)	33, 240, 365, 400, 550, 674
Lsp1109I	GCAGC	3 cut(s)	17, 489, 492
MaeII	ACGT	2 cut(s)	276, 372
MaeIII	GTNAC	2 cut(s)	286, 491
MalI	GATC	4 cut(s)	20, 461, 542, 698
MboI	GATC	4 cut(s)	18, 459, 540, 696
MboII	GAAGA	3 cut(s)	88, 319, 445
MhlI	GDGCHC	2 cut(s)	405, 555
MluCI	AATT	1 cut(s)	640
Mly113I	GGCGCC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	321
MreI	CGCCGGCG	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	1 cut(s)	630
MspI	CCGG	4 cut(s)	270, 339, 377, 572
MspR9I	CCNGG	3 cut(s)	339, 377, 378
MwoI	GCNNNNNNNGC	5 cut(s)	77, 218, 437, 545, 577
NaeI	GCCGGC	1 cut(s)	271
NarI	GGCGCC	1 cut(s)	342
NciI	CCSGG	3 cut(s)	339, 377, 378
NdeII	GATC	4 cut(s)	18, 459, 540, 696
NgoMIV	GCCGGC	1 cut(s)	269
NlaIV	GGNNCC	3 cut(s)	29, 343, 658
NmuCI	GTSAC	2 cut(s)	286, 491
PcsI	WCGNNNNNNNCGW	5 cut(s)	225, 270, 282, 453, 561
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	381, 478
PkrI	GCNGC	5 cut(s)	7, 73, 268, 504, 507
Ple19I	CGATCG	1 cut(s)	543
PluTI	GGCGCC	1 cut(s)	345
Psp124BI	GAGCTC	2 cut(s)	405, 555
PspFI	CCCAGC	1 cut(s)	580
PspN4I	GGNNCC	3 cut(s)	29, 343, 658
PspPI	GGNCC	1 cut(s)	591
PvuI	CGATCG	1 cut(s)	543
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SacI	GAGCTC	2 cut(s)	405, 555
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	5 cut(s)	6, 72, 267, 503, 506
Sau3AI	GATC	4 cut(s)	18, 459, 540, 696
Sau96I	GGNCC	1 cut(s)	591
ScrFI	CCNGG	3 cut(s)	339, 377, 378
SduI	GDGCHC	2 cut(s)	405, 555
SfoI	GGCGCC	1 cut(s)	343
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	591
SmaI	CCCGGG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	22, 404
SmoI	CTYRAG	2 cut(s)	22, 404
Sse9I	AATT	1 cut(s)	640
SspDI	GGCGCC	1 cut(s)	341
SstI	GAGCTC	2 cut(s)	405, 555
StyD4I	CCNGG	3 cut(s)	337, 375, 376
TaaI	ACNGT	2 cut(s)	286, 292
TaiI	ACGT	2 cut(s)	279, 375
TaqI	TCGA	2 cut(s)	420, 555
TasI	AATT	1 cut(s)	640
TauI	GCSGC	2 cut(s)	74, 269
TfiI	GAWTC	2 cut(s)	381, 478
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	286, 491
TseI	GCWGC	3 cut(s)	5, 502, 505
Tsp45I	GTSAC	2 cut(s)	286, 491
TspMI	CCCGGG	1 cut(s)	376
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	591
XapI	RAATTY	1 cut(s)	640
XmaI	CCCGGG	1 cut(s)	376
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.