FvH4_6g17760

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015308
Physical Location & Seq
Reverse (-)
11637403 .. 11638095
693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17760.t1

Sequence Viewer

Length: 693 bp
ATGGCAGCCTCTCTCACCATCTCAAGGCTCCTCACAGCCCCCAGATCCCTCTCCCTCTCCTCCACCACCACCACAACCAAAGCCTCCCTCTTCTCCCCCAAACCCTTCTCCTCAAAATTCTCCTACTCCCCTCTCTCTCTCAAACACCACACCCACCTCAAACCCCTCAAATTCTCCACCACCGCCGCCAAACCCATCTCCGCCACCATCTCCGTCGGCGACAAGCTCCCCGAGTCCACCCTCTCCTACCTCGACGCCGCCGGCGACGTCCAGACCGTCACCGTCTCGGAGCTGACCAAGTCGAAGAAGGCCGTCCTCTTCGCCGTCCCCGGCGCTTTCACCCCAACCTGCTCCCAGAAACACGTTCCCGGATTCGTGGAGAAGTCGGCGGAGCTCAAGGCCAAGGGGGTCGACACCATCGCCTGCATTTCGGTCAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCAAGATCGAAGACGAGGTGCTCTTGTTGTCTGATGGGAATGGGGACTTCACCAGGGCCATCGGGGTCGAGCTCGATTTGAGTGATAAGCCGGTGGGATTGGGAGTCAGGTCCAGAAGGTATTCGATTTTGGCTGAGGATGGAGTTGTGAAGGTGTTGAATTTGGAGGAAGGTGGTGCTTTCACTTCTAGTGGAGCTGATGAGATTCTCAAAGTTCTGTGA

Protein Analysis

231

Amino Acids

24.4

Weight (kDa)

8.76

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 72 - 226 8.7e-36 Redoxin
AhpC-TSA PF00578 72 - 208 3.6e-15 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52960
fragaria_vesca FvH4_6g17760
malus_domestica MD12G1016500.v1.1 MD14G1014500.v1.1
prunus_persica Prupe.7G118900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471981
rosa_laevigata RLG00000024114
rosa_multiflora Rmu_sc0000090.1_g000024
rosa_roxburghii Rroxscaffold_6G00409380
rosa_rugosa Rorug03G0121400
rosa_samantha Rh3AG172900 Rh3BG198400 Rh3CG189500 Rh3CG196900 Rh3DG175900
rosa_wichuraiana Rw3G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 411
AciI CCGC 5 cut(s) 183, 186, 201, 258, 389
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 3 cut(s) 116, 170, 631
AcyI GRCGYC 3 cut(s) 255, 267, 441
AfiI CCNNNNNNNGG 1 cut(s) 24
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 1 cut(s) 631
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 5 cut(s) 226, 292, 394, 544, 668
AluI AGCT 5 cut(s) 226, 292, 394, 544, 668
Alw21I GWGCWC 3 cut(s) 396, 495, 546
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 3 cut(s) 309, 399, 528
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 116, 170, 631
Asp700I GAANNNNTTC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 528, 582
AsuC2I CCSGG 2 cut(s) 330, 369
AsuHPI GGTGA 4 cut(s) 7, 271, 331, 514
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 582
BanII GRGCYC 2 cut(s) 396, 546
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 3 cut(s) 396, 495, 546
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 17
BccI CCATC 7 cut(s) 26, 203, 215, 425, 500, 539, 605
BceAI ACGGC 2 cut(s) 296, 308
BciT130I CCWGG 1 cut(s) 526
BcnI CCSGG 2 cut(s) 330, 369
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 660
BfoI RGCGCY 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 3 cut(s) 6, 186, 258
BlsI GCNGC 3 cut(s) 7, 187, 259
Bme1390I CCNGG 3 cut(s) 330, 369, 526
Bme18I GGWCC 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 528, 582
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 3 cut(s) 330, 369, 526
BpiI GAAGAC 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 3 cut(s) 7, 380, 458
BpuMI CCSGG 2 cut(s) 330, 369
BsaHI GRCGYC 3 cut(s) 255, 267, 441
BsaJI CCNNGG 3 cut(s) 328, 402, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 260, 562
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 328, 402, 525
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 597
BseRI GAGGAG 3 cut(s) 20, 49, 100
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 311, 401, 530
BsiHKAI GWGCWC 3 cut(s) 396, 495, 546
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 4 cut(s) 261, 330, 369, 563
BslFI GGGAC 2 cut(s) 311, 530
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 289
BsmBI CGTCTC 1 cut(s) 289
BsmFI GGGAC 2 cut(s) 311, 530
BsnI GGCC 3 cut(s) 311, 401, 530
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 3 cut(s) 396, 495, 546
Bsp143I GATC 2 cut(s) 44, 477
BspACI CCGC 5 cut(s) 183, 186, 201, 258, 389
BspANI GGCC 3 cut(s) 311, 401, 530
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 260, 562
BssAI RCCGGY 2 cut(s) 260, 562
BssECI CCNNGG 3 cut(s) 328, 402, 525
BssMI GATC 2 cut(s) 44, 477
BssNI GRCGYC 3 cut(s) 255, 267, 441
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 2 cut(s) 277, 283
Bst6I CTCTTC 2 cut(s) 95, 323
BstACI GRCGYC 3 cut(s) 255, 267, 441
BstC8I GCNNGC 2 cut(s) 262, 424
BstDEI CTNAG 1 cut(s) 606
BstF5I GGATG 1 cut(s) 616
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 2 cut(s) 47, 480
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 44, 477
BstNI CCWGG 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 328, 367, 524
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 3 cut(s) 311, 401, 530
BtgZI GCGATG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 616
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 262, 424
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 2 cut(s) 260, 562
Cfr13I GGNCC 2 cut(s) 528, 582
CseI GACGC 2 cut(s) 263, 449
DdeI CTNAG 1 cut(s) 606
DpnI GATC 2 cut(s) 46, 479
DpnII GATC 2 cut(s) 44, 477
Eam1104I CTCTTC 2 cut(s) 95, 323
EarI CTCTTC 2 cut(s) 95, 323
EciI GGCGGA 2 cut(s) 190, 404
Ecl136II GAGCTC 2 cut(s) 394, 544
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 2 cut(s) 396, 546
Eco47I GGWCC 1 cut(s) 582
Eco53kI GAGCTC 2 cut(s) 394, 544
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 2 cut(s) 394, 544
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 2 cut(s) 396, 546
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 289
FaqI GGGAC 2 cut(s) 311, 530
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 6, 186, 258
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 2 cut(s) 396, 546
Fsp4HI GCNGC 3 cut(s) 6, 186, 258
FspBI CTAG 1 cut(s) 660
GlaI GCGC 1 cut(s) 334
GluI GCNGC 3 cut(s) 6, 186, 258
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 3 cut(s) 311, 401, 530
HapII CCGG 4 cut(s) 261, 330, 369, 563
HgaI GACGC 2 cut(s) 263, 449
HhaI GCGC 1 cut(s) 335
Hin1I GRCGYC 3 cut(s) 255, 267, 441
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 2 cut(s) 412, 436
HindII GTYRAC 2 cut(s) 412, 436
HinfI GANTC 4 cut(s) 233, 372, 576, 676
HpaII CCGG 4 cut(s) 261, 330, 369, 563
HphI GGTGA 4 cut(s) 7, 271, 331, 514
Hpy166II GTNNAC 3 cut(s) 237, 412, 436
Hpy188I TCNGA 2 cut(s) 289, 505
Hpy188III TCNNGA 4 cut(s) 271, 448, 475, 585
Hpy8I GTNNAC 3 cut(s) 237, 412, 436
Hpy99I CGWCG 4 cut(s) 218, 257, 269, 443
HpyAV CCTTC 8 cut(s) 115, 301, 448, 454, 457, 582, 616, 635
HpyCH4III ACNGT 2 cut(s) 277, 283
HpyCH4IV ACGT 2 cut(s) 267, 363
HpyCH4V TGCA 1 cut(s) 426
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 2 cut(s) 267, 363
Hsp92I GRCGYC 3 cut(s) 255, 267, 441
HspAI GCGC 1 cut(s) 333
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 44, 477
LmnI GCTCC 6 cut(s) 33, 231, 289, 356, 391, 665
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 267, 363
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 46, 479
MboI GATC 2 cut(s) 44, 477
MboII GAAGA 4 cut(s) 82, 310, 316, 494
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 3 cut(s) 396, 495, 546
MluCI AATT 3 cut(s) 116, 170, 631
MlyI GAGTC 2 cut(s) 242, 585
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 592
MspI CCGG 4 cut(s) 261, 330, 369, 563
MspR9I CCNGG 3 cut(s) 330, 369, 526
MvaI CCWGG 1 cut(s) 526
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 2 cut(s) 330, 369
NdeII GATC 2 cut(s) 44, 477
NgoMIV GCCGGC 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 3 cut(s) 261, 273, 444
PdiI GCCGGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 372, 676
PflFI GACNNNGTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 3 cut(s) 7, 187, 259
PleI GAGTC 2 cut(s) 241, 584
PpsI GAGTC 2 cut(s) 241, 584
Psp124BI GAGCTC 2 cut(s) 396, 546
Psp6I CCWGG 1 cut(s) 524
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 528, 582
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 298
SacI GAGCTC 2 cut(s) 396, 546
SalI GTCGAC 1 cut(s) 410
SatI GCNGC 3 cut(s) 6, 186, 258
Sau3AI GATC 2 cut(s) 44, 477
Sau96I GGNCC 2 cut(s) 528, 582
SchI GAGTC 2 cut(s) 242, 585
ScrFI CCNGG 3 cut(s) 330, 369, 526
SduI GDGCHC 3 cut(s) 396, 495, 546
SgrAI CRCCGGYG 1 cut(s) 260
SinI GGWCC 1 cut(s) 582
SmlI CTYRAG 3 cut(s) 22, 395, 473
SmoI CTYRAG 3 cut(s) 22, 395, 473
Sse9I AATT 3 cut(s) 116, 170, 631
SsiI CCGC 5 cut(s) 183, 186, 201, 258, 389
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 2 cut(s) 396, 546
StyD4I CCNGG 3 cut(s) 328, 367, 524
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 277, 283
TaiI ACGT 2 cut(s) 270, 366
TaqI TCGA 7 cut(s) 252, 302, 411, 480, 540, 546, 596
TaqII GACCGA 1 cut(s) 421
TasI AATT 3 cut(s) 116, 170, 631
TauI GCSGC 2 cut(s) 188, 260
TfiI GAWTC 2 cut(s) 372, 676
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 1 cut(s) 202
Tth111I GACNNNGTC 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 582
XapI RAATTY 3 cut(s) 116, 170, 631
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 1 cut(s) 660
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.