Rh3CG196900

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015308
Physical Location & Seq
Reverse (-)
17586848 .. 17587543
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG196900.1

Sequence Viewer

Length: 696 bp
ATGGCAGCCTCTCTCACCATCTCAAGGCTCCTCGCAGCCCCCAGATCCCTCTCCCTCTCCTCCACCACCACCACCACAACCAAAGCCTCCCTCTTCTCCGCCAAACCCTTCTCTTCAAAATCCTCCTACGCCCCTTTCTCTCTCAAACACCAGACCCACCCCAAACCCCTCAAATTCTCCACCACCGCCGCCAAACCCATCTCTGCCACCATCTCCGTCGGCGACAAGCTCCCAGAGTCCACCCTCTCCTACCTCGACGCCGCCGGCGACGTCCAGACCGTCACTGTCTCTGAGCTGACCAAGTCCAAGAAGGCCGTCCTCTTCGCCGTCCCCGGCGCCTTCACCCCCACCTGTTCCCAGAAGCACGTTCCCGGATTCGTGGAGAAGTCCGCCGAGCTCAAGGCCAAGGGGGTCGACACCATCGCTTGCATTTCGGTCAACGACGCCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCAAGATCGGAGACGAGGTACTTTTGTTGTCCGATGGGAATGGGAACTTCACCAAGGCCATCGGGGTCGAGCTCGATTTGAGTGATAAGCCGGTGGGATTGGGAGTCAGGTCCAGAAGGTACTCGCTTTTGGCTGAAGATGGAGTCGTGAAGGTGTTGAACTTGGAGGAAGGTGGTGCTTTCACTTCCAGTGGAGCTGATGATATTCTCAAAGTTCTGTGA

Protein Analysis

231

Amino Acids

24.27

Weight (kDa)

9.11

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 73 - 227 6.3e-36 Redoxin
AhpC-TSA PF00578 73 - 209 7.8e-15 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52960
fragaria_vesca FvH4_6g17760
malus_domestica MD12G1016500.v1.1 MD14G1014500.v1.1
prunus_persica Prupe.7G118900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0471981
rosa_laevigata RLG00000024114
rosa_multiflora Rmu_sc0000090.1_g000024
rosa_roxburghii Rroxscaffold_6G00409380
rosa_rugosa Rorug03G0121400
rosa_samantha Rh3AG172900 Rh3BG198400 Rh3CG189500 Rh3CG196900 Rh3DG175900
rosa_wichuraiana Rw3G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 414
AciI CCGC 5 cut(s) 99, 186, 189, 261, 390
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 4 cut(s) 258, 270, 336, 444
AfaI GTAC 2 cut(s) 495, 596
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 117, 634
AluBI AGCT 5 cut(s) 229, 295, 397, 547, 671
AluI AGCT 5 cut(s) 229, 295, 397, 547, 671
Alw21I GWGCWC 2 cut(s) 399, 549
Alw26I GTCTC 2 cut(s) 292, 480
AlwI GGATC 1 cut(s) 39
AoxI GGCC 3 cut(s) 312, 402, 531
ApeKI GCWGC 2 cut(s) 5, 35
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 585
AsuC2I CCSGG 2 cut(s) 333, 372
AsuHPI GGTGA 3 cut(s) 7, 334, 517
AvaII GGWCC 1 cut(s) 585
BaeI ACNNNNGTAYC 2 cut(s) 485, 518
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 399, 549
Bbv12I GWGCWC 2 cut(s) 399, 549
BbvI GCAGC 2 cut(s) 17, 47
BccI CCATC 7 cut(s) 26, 206, 218, 428, 503, 542, 608
BceAI ACGGC 2 cut(s) 299, 311
BcnI CCSGG 2 cut(s) 333, 372
BcoDI GTCTC 2 cut(s) 292, 480
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 4 cut(s) 6, 36, 189, 261
BlsI GCNGC 4 cut(s) 7, 37, 190, 262
Bme1390I CCNGG 2 cut(s) 333, 372
Bme18I GGWCC 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 2 cut(s) 29, 337
BmrFI CCNGG 2 cut(s) 333, 372
BpuEI CTTGAG 3 cut(s) 7, 383, 461
BpuMI CCSGG 2 cut(s) 333, 372
BsaHI GRCGYC 4 cut(s) 258, 270, 336, 444
BsaJI CCNNGG 3 cut(s) 331, 405, 528
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 263, 565
Bse1I ACTGG 1 cut(s) 663
BseDI CCNNGG 3 cut(s) 331, 405, 528
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 2 cut(s) 20, 49
BseXI GCAGC 2 cut(s) 17, 47
BshFI GGCC 3 cut(s) 314, 404, 533
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 399, 549
BsiSI CCGG 4 cut(s) 264, 333, 372, 566
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 292, 480
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 3 cut(s) 314, 404, 533
Bsp1286I GDGCHC 2 cut(s) 399, 549
Bsp143I GATC 2 cut(s) 44, 480
BspACI CCGC 5 cut(s) 99, 186, 189, 261, 390
BspANI GGCC 3 cut(s) 314, 404, 533
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 29, 337
BspPI GGATC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 335
BsrFI RCCGGY 2 cut(s) 263, 565
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 2 cut(s) 263, 565
BssECI CCNNGG 3 cut(s) 331, 405, 528
BssMI GATC 2 cut(s) 44, 480
BssNI GRCGYC 4 cut(s) 258, 270, 336, 444
BssT1I CCWWGG 2 cut(s) 405, 528
Bst4CI ACNGT 2 cut(s) 280, 286
Bst6I CTCTTC 3 cut(s) 98, 118, 326
BstACI GRCGYC 4 cut(s) 258, 270, 336, 444
BstC8I GCNNGC 2 cut(s) 265, 427
BstDEI CTNAG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 2 cut(s) 47, 483
BstMAI GTCTC 2 cut(s) 292, 480
BstMBI GATC 2 cut(s) 44, 480
BstSCI CCNGG 2 cut(s) 331, 370
BstV1I GCAGC 2 cut(s) 17, 47
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 3 cut(s) 314, 404, 533
BtgZI GCGATG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 282, 670
Cac8I GCNNGC 2 cut(s) 265, 427
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 2 cut(s) 263, 565
Cfr13I GGNCC 1 cut(s) 585
CseI GACGC 2 cut(s) 266, 452
Csp6I GTAC 2 cut(s) 494, 595
CviQI GTAC 2 cut(s) 494, 595
DdeI CTNAG 1 cut(s) 291
DinI GGCGCC 1 cut(s) 337
DpnI GATC 2 cut(s) 46, 482
DpnII GATC 2 cut(s) 44, 480
Eam1104I CTCTTC 3 cut(s) 98, 118, 326
EarI CTCTTC 3 cut(s) 98, 118, 326
EciI GGCGGA 2 cut(s) 88, 379
Ecl136II GAGCTC 2 cut(s) 397, 547
Eco130I CCWWGG 2 cut(s) 405, 528
Eco24I GRGCYC 2 cut(s) 399, 549
Eco47I GGWCC 1 cut(s) 585
Eco53kI GAGCTC 2 cut(s) 397, 547
Eco57I CTGAAG 1 cut(s) 630
EcoICRI GAGCTC 2 cut(s) 397, 547
EcoT14I CCWWGG 2 cut(s) 405, 528
EcoT38I GRGCYC 2 cut(s) 399, 549
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 405, 528
Esp3I CGTCTC 1 cut(s) 480
FaqI GGGAC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 4 cut(s) 6, 36, 189, 261
FriOI GRGCYC 2 cut(s) 399, 549
Fsp4HI GCNGC 4 cut(s) 6, 36, 189, 261
GlaI GCGC 1 cut(s) 337
GluI GCNGC 4 cut(s) 6, 36, 189, 261
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 3 cut(s) 314, 404, 533
HapII CCGG 4 cut(s) 264, 333, 372, 566
HgaI GACGC 2 cut(s) 266, 452
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 4 cut(s) 258, 270, 336, 444
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 2 cut(s) 415, 439
HindII GTYRAC 2 cut(s) 415, 439
HinfI GANTC 4 cut(s) 236, 375, 579, 618
HpaII CCGG 4 cut(s) 264, 333, 372, 566
HphI GGTGA 3 cut(s) 7, 334, 517
Hpy166II GTNNAC 3 cut(s) 240, 415, 439
Hpy188I TCNGA 3 cut(s) 292, 485, 508
Hpy188III TCNNGA 5 cut(s) 274, 451, 478, 588, 622
Hpy8I GTNNAC 3 cut(s) 240, 415, 439
Hpy99I CGWCG 4 cut(s) 221, 260, 272, 446
HpyAV CCTTC 9 cut(s) 118, 304, 349, 451, 457, 460, 585, 619, 638
HpyCH4III ACNGT 2 cut(s) 280, 286
HpyCH4IV ACGT 2 cut(s) 270, 366
HpyCH4V TGCA 1 cut(s) 429
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 2 cut(s) 270, 366
Hsp92I GRCGYC 4 cut(s) 258, 270, 336, 444
HspAI GCGC 1 cut(s) 336
KasI GGCGCC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 44, 480
LmnI GCTCC 3 cut(s) 33, 234, 668
Lsp1109I GCAGC 2 cut(s) 17, 47
MaeII ACGT 2 cut(s) 270, 366
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 46, 482
MboI GATC 2 cut(s) 44, 480
MboII GAAGA 4 cut(s) 85, 105, 313, 623
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 399, 549
MluCI AATT 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 3 cut(s) 245, 588, 627
MreI CGCCGGCG 1 cut(s) 263
MroNI GCCGGC 1 cut(s) 263
MspI CCGG 4 cut(s) 264, 333, 372, 566
MspR9I CCNGG 2 cut(s) 333, 372
NaeI GCCGGC 1 cut(s) 265
NarI GGCGCC 1 cut(s) 336
NciI CCSGG 2 cut(s) 333, 372
NdeII GATC 2 cut(s) 44, 480
NgoMIV GCCGGC 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 29, 337
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 276, 447
PdiI GCCGGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 375
PflFI GACNNNGTC 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 4 cut(s) 7, 37, 190, 262
PleI GAGTC 3 cut(s) 244, 587, 626
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 3 cut(s) 244, 587, 626
Psp124BI GAGCTC 2 cut(s) 399, 549
PspN4I GGNNCC 2 cut(s) 29, 337
PspPI GGNCC 1 cut(s) 585
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 301
RsaI GTAC 2 cut(s) 495, 596
RsaNI GTAC 2 cut(s) 494, 595
SacI GAGCTC 2 cut(s) 399, 549
SalI GTCGAC 1 cut(s) 413
SatI GCNGC 4 cut(s) 6, 36, 189, 261
Sau3AI GATC 2 cut(s) 44, 480
Sau96I GGNCC 1 cut(s) 585
SchI GAGTC 3 cut(s) 245, 588, 627
ScrFI CCNGG 2 cut(s) 333, 372
SduI GDGCHC 2 cut(s) 399, 549
SfoI GGCGCC 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 585
SmlI CTYRAG 3 cut(s) 22, 398, 476
SmoI CTYRAG 3 cut(s) 22, 398, 476
Sse9I AATT 1 cut(s) 173
SsiI CCGC 5 cut(s) 99, 186, 189, 261, 390
SspDI GGCGCC 1 cut(s) 335
SstI GAGCTC 2 cut(s) 399, 549
StyD4I CCNGG 2 cut(s) 331, 370
StyI CCWWGG 2 cut(s) 405, 528
TaaI ACNGT 2 cut(s) 280, 286
TaiI ACGT 2 cut(s) 273, 369
TaqI TCGA 4 cut(s) 255, 414, 543, 549
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 173
TauI GCSGC 2 cut(s) 191, 263
TfiI GAWTC 1 cut(s) 375
TscAI CASTG 2 cut(s) 289, 670
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 5, 35
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 2 cut(s) 289, 670
Tth111I GACNNNGTC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 585
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 414
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.