AT3G53990

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015068
Physical Location & Seq
Reverse (-)
19989292 .. 19991186
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53990.2

Sequence Viewer

Length: 483 bp
ATGCCTAAAGACAGGAATATCGGAATCGCCATGGATTTCTCAGAGAGCAGCAAGAACGCTCTGAAATGGGCGATCGAGAACTTAGCAGACAAAGGAGACACGATTTACATCATCCACACTCTACCACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCATGGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGTGATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

160

Amino Acids

17.79

Weight (kDa)

5.66

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 53 8.8e-08 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53990 AT3G53990
fragaria_vesca FvH4_6g12670
malus_domestica MD04G1139800.v1.1 MD12G1155300.v1.1
prunus_persica Prupe.6G265200_v2.0.a1
pyrus_communis pycom04g12770
rosa_chinensis RchiOBHm_Chr3g0464511
rosa_laevigata RLG00000024689
rosa_roxburghii Rroxscaffold_6G00415600
rosa_rugosa Rorug03G0008900 Rorug03G0072800
rosa_samantha Rh3BG135100 Rh3CG137700 Rh3DG136400
rosa_wichuraiana Rw3G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AccII CGCG 1 cut(s) 446
AclWI GGATC 1 cut(s) 430
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 163, 401
AluBI AGCT 2 cut(s) 331, 429
AluI AGCT 2 cut(s) 331, 429
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 48, 426
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 60, 438
BcoDI GTCTC 1 cut(s) 90
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 49, 427
BlsI GCNGC 2 cut(s) 50, 428
BmiI GGNNCC 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 307, 328
BmuI ACTGGG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 2 cut(s) 167, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 271, 314
Bse8I GATNNNNATC 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 54, 403
BseNI ACTGG 2 cut(s) 271, 314
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 60, 438
Bsh1236I CGCG 1 cut(s) 446
Bsh1285I CGRYCG 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 168, 206
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 72, 349, 435
Bsp19I CCATGG 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 53, 402
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 402
BsrI ACTGG 2 cut(s) 271, 314
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 3 cut(s) 72, 349, 435
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 186, 227, 463
Bst6I CTCTTC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 40, 82, 389
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 3 cut(s) 75, 352, 438
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 72, 349, 435
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNSI RCATGY 2 cut(s) 249, 293
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 60, 438
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 30
BtgZI GCGATG 2 cut(s) 150, 226
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 264, 397
CfoI GCGC 1 cut(s) 448
CviAII CATG 4 cut(s) 31, 246, 290, 373
CviJI RGCY 2 cut(s) 331, 429
CviKI_1 RGCY 2 cut(s) 331, 429
DdeI CTNAG 3 cut(s) 40, 82, 389
DpnI GATC 3 cut(s) 74, 351, 437
DpnII GATC 3 cut(s) 72, 349, 435
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 34, 249, 293, 376
FaiI YATR 8 cut(s) 32, 182, 215, 247, 257, 291, 307, 374
FatI CATG 4 cut(s) 30, 245, 289, 372
Fnu4HI GCNGC 2 cut(s) 49, 427
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 49, 427
GlaI GCGC 1 cut(s) 447
GluI GCNGC 2 cut(s) 49, 427
HapII CCGG 2 cut(s) 168, 206
HhaI GCGC 1 cut(s) 448
Hin1II CATG 4 cut(s) 34, 249, 293, 376
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 4 cut(s) 24, 140, 362, 387
HpaII CCGG 2 cut(s) 168, 206
HphI GGTGA 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 23, 43, 63
Hpy188III TCNNGA 2 cut(s) 76, 251
HpyCH4III ACNGT 3 cut(s) 186, 227, 463
HpyCH4V TGCA 2 cut(s) 289, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 3 cut(s) 40, 82, 389
Hsp92II CATG 4 cut(s) 34, 249, 293, 376
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 3 cut(s) 72, 349, 435
LguI GCTCTTC 1 cut(s) 402
LpnPI CCDG 7 cut(s) 117, 142, 181, 219, 252, 295, 468
Lsp1109I GCAGC 2 cut(s) 60, 438
LweI GCATC 2 cut(s) 307, 328
MaeIII GTNAC 3 cut(s) 146, 295, 457
MalI GATC 3 cut(s) 74, 351, 437
MboI GATC 3 cut(s) 72, 349, 435
MboII GAAGA 1 cut(s) 389
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 397
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 164, 186, 267, 277, 377
MseI TTAA 2 cut(s) 345, 354
MspI CCGG 2 cut(s) 168, 206
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 426
NcoI CCATGG 1 cut(s) 30
NdeII GATC 3 cut(s) 72, 349, 435
NlaIII CATG 4 cut(s) 34, 249, 293, 376
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 295, 457
NspI RCATGY 2 cut(s) 249, 293
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 24, 140, 362
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 2 cut(s) 50, 428
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 349
PvuI CGATCG 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 345, 354
SatI GCNGC 2 cut(s) 49, 427
Sau3AI GATC 3 cut(s) 72, 349, 435
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 1 cut(s) 397
SetI ASST 3 cut(s) 288, 333, 431
SfaNI GCATC 2 cut(s) 307, 328
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 186, 227, 463
TaqI TCGA 4 cut(s) 75, 261, 272, 360
TfiI GAWTC 3 cut(s) 24, 140, 362
Tru1I TTAA 2 cut(s) 345, 354
Tru9I TTAA 2 cut(s) 345, 354
TscAI CASTG 2 cut(s) 271, 397
TseFI GTSAC 2 cut(s) 295, 457
TseI GCWGC 2 cut(s) 48, 426
Tsp45I GTSAC 2 cut(s) 295, 457
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 2 cut(s) 271, 397
Van91I CCANNNNNTGG 1 cut(s) 131
XceI RCATGY 2 cut(s) 249, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.