Prupe.6G265200_v2.0.a1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015068
Physical Location & Seq
Reverse (-)
25390924 .. 25392153
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G265200.1

Sequence Viewer

Length: 495 bp
ATGGGAAAGGATAGGAAGATTGGCGTTGCCATGGACTTCTCAAAGAGCAGCAAGAACGCGCTGGAATGGGCTGTGGACAATTTGCTTGACAAGGGTGACACCCTTTACATCATCCACATCAACCCCAACTCGCTCGACGAGTCTCGTACCCAACTCTGGGCCCAATCTGGTTCTCCTCTGATTCCATTGACAGAGTTCAGAGAGCCCGAGATCATGAAGAAGTATGATGTGCGAACTGATATTGAAGTTCTTGATACACTTGACACTGCTTCCAGGCAGAAAGAGGTGAACATTGTGACAAAACTGTACTGGGGAGATGCAAGGGAGAAGCTTCTTCAAGCGATTGAAGATCTGAAGCTGGACTCTTTGGTCATGGGAAGCAGAGGCCTTGGTACCATCAAAAGGATCCTGCTGGGGAGTGTGAGCAACTATGTGCTGACAAATGCTCCAATCCCTGTGACCATTGTCAAGGACCCAAGCTTGCAACACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

165

Amino Acids

18.43

Weight (kDa)

5.92

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53990 AT3G53990
fragaria_vesca FvH4_6g12670
malus_domestica MD04G1139800.v1.1 MD12G1155300.v1.1
prunus_persica Prupe.6G265200_v2.0.a1
pyrus_communis pycom04g12770
rosa_chinensis RchiOBHm_Chr3g0464511
rosa_laevigata RLG00000024689
rosa_roxburghii Rroxscaffold_6G00415600
rosa_rugosa Rorug03G0008900 Rorug03G0072800
rosa_samantha Rh3BG135100 Rh3CG137700 Rh3DG136400
rosa_wichuraiana Rw3G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AccII CGCG 1 cut(s) 59
AclWI GGATC 2 cut(s) 400, 413
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 3 cut(s) 148, 308, 394
AfiI CCNNNNNNNGG 3 cut(s) 156, 157, 402
AgsI TTSAA 3 cut(s) 245, 338, 347
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 3 cut(s) 331, 358, 480
AluI AGCT 3 cut(s) 331, 358, 480
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 2 cut(s) 400, 413
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 159, 385
ApaI GGGCCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 392
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 159, 160, 472
AsuHPI GGTGA 2 cut(s) 107, 298
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 163
BamHI GGATCC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 2 cut(s) 163, 207
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 147
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 159, 160, 472
BmiI GGNNCC 4 cut(s) 161, 394, 407, 474
BmrFI CCNGG 1 cut(s) 274
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 30, 388
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 157, 402
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 30, 388
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 156, 157, 402
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 161, 387
BshNI GGYRCC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 156, 157, 402
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 2 cut(s) 161, 387
BsoBI CYCGRG 1 cut(s) 206
Bsp120I GGGCCC 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 163, 207
Bsp143I GATC 3 cut(s) 210, 349, 405
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 2 cut(s) 161, 387
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 161, 394, 407, 474
BspPI GGATC 2 cut(s) 400, 413
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 30, 388
BssMI GATC 3 cut(s) 210, 349, 405
BssT1I CCWWGG 2 cut(s) 30, 388
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 482
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 213, 352, 408
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 3 cut(s) 210, 349, 405
BstNI CCWGG 1 cut(s) 274
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 349, 405
BstYI RGATCY 2 cut(s) 349, 405
BsuRI GGCC 2 cut(s) 161, 387
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 482
CciI TCATGA 1 cut(s) 213
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 159, 160, 472
Csp6I GTAC 3 cut(s) 147, 307, 393
CviAII CATG 3 cut(s) 31, 214, 373
CviJI RGCY 7 cut(s) 71, 161, 205, 331, 358, 387, 480
CviKI_1 RGCY 7 cut(s) 71, 161, 205, 331, 358, 387, 480
CviQI GTAC 3 cut(s) 147, 307, 393
DpnI GATC 3 cut(s) 212, 351, 407
DpnII GATC 3 cut(s) 210, 349, 405
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eco130I CCWWGG 2 cut(s) 30, 388
Eco147I AGGCCT 1 cut(s) 387
Eco24I GRGCYC 2 cut(s) 163, 207
Eco47I GGWCC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 30, 388
EcoT38I GRGCYC 2 cut(s) 163, 207
ErhI CCWWGG 2 cut(s) 30, 388
FaeI CATG 3 cut(s) 34, 217, 376
FaiI YATR 5 cut(s) 32, 215, 225, 374, 432
FatI CATG 3 cut(s) 30, 213, 372
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 2 cut(s) 163, 207
Fsp4HI GCNGC 1 cut(s) 49
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 49
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 2 cut(s) 161, 387
HhaI GCGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 34, 217, 376
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HindIII AAGCTT 2 cut(s) 329, 478
HinfI GANTC 3 cut(s) 140, 181, 362
HphI GGTGA 2 cut(s) 107, 298
Hpy166II GTNNAC 2 cut(s) 76, 289
Hpy188I TCNGA 3 cut(s) 180, 200, 354
Hpy188III TCNNGA 2 cut(s) 214, 251
Hpy8I GTNNAC 2 cut(s) 76, 289
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 320, 484
Hsp92II CATG 3 cut(s) 34, 217, 376
HspAI GCGC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 210, 349, 405
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 3 cut(s) 95, 295, 457
MalI GATC 3 cut(s) 212, 351, 407
MboI GATC 3 cut(s) 210, 349, 405
MboII GAAGA 4 cut(s) 28, 229, 326, 359
MflI RGATCY 2 cut(s) 349, 405
MhlI GDGCHC 2 cut(s) 163, 207
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 149, 356
MnlI CCTC 3 cut(s) 186, 277, 377
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 59
NcoI CCATGG 1 cut(s) 30
NdeII GATC 3 cut(s) 210, 349, 405
NlaIII CATG 3 cut(s) 34, 217, 376
NlaIV GGNNCC 4 cut(s) 161, 394, 407, 474
NmuCI GTSAC 3 cut(s) 95, 295, 457
PagI TCATGA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 387
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 2 cut(s) 148, 356
PpsI GAGTC 2 cut(s) 148, 356
PpuMI RGGWCCY 1 cut(s) 472
PshAI GACNNNNGTC 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 4 cut(s) 161, 394, 407, 474
PspOMI GGGCCC 1 cut(s) 159
PspPI GGNCC 3 cut(s) 159, 160, 472
PspPPI RGGWCCY 1 cut(s) 472
PsuI RGATCY 2 cut(s) 349, 405
RsaI GTAC 3 cut(s) 148, 308, 394
RsaNI GTAC 3 cut(s) 147, 307, 393
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 3 cut(s) 210, 349, 405
Sau96I GGNCC 3 cut(s) 159, 160, 472
SchI GAGTC 2 cut(s) 149, 356
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 2 cut(s) 163, 207
SetI ASST 4 cut(s) 288, 333, 360, 482
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 472
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 387
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 2 cut(s) 30, 388
TaaI ACNGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 3 cut(s) 95, 295, 457
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 3 cut(s) 95, 295, 457
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.