Rroxscaffold_6G00415600

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015068
Physical Location & Seq
Reverse (-)
37735889 .. 37737166
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415600.1

Sequence Viewer

Length: 522 bp
ATGGTGAAGGATAGGAGGATTGGTGTGGCCATGGACTTCTCAAAGAGCAGCAAAAACGCTCTTCAATGGGCCGTAGACAACTTGGTCGACAAAGGTGACACCCTCTGCATCATCCACATCAACAGCAACAAACTCGACGAGTCTCGCAACGTCCTCTGGGCCAAATCTGGTTCTCGCTTGAAGGTTGTGTCTGATCTGGGTTTTATTGCAGCTCTTATTCCATTGTCTGAGTTCAGAGAGCCTGAGGTTATGAAAAAGTATGGGGTACAAACTGATATGGAAGTGCTTGATACACTCGACACTGCTTCTAGGCAGAAAGAGGTGAGCATTATTACAAAGCTGTACTGGGGAGATGCAAGGGAGAAGCTTCTTGAAGCAGTTGAGGATCTGAAATTAGACTCTCTGGTGATGGGAAGCAGAGGACTTGGTACCCTTAAAAGGGTTATACTTGGAAGTGTGAGCGACTATGTGATGACGAATGCTTCAATCCCTGTGACCATTGTCAAGGACCTTGACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

173

Amino Acids

19.27

Weight (kDa)

6.61

Isoelectric Point (pI)

21.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 169 7.6e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53990 AT3G53990
fragaria_vesca FvH4_6g12670
malus_domestica MD04G1139800.v1.1 MD12G1155300.v1.1
prunus_persica Prupe.6G265200_v2.0.a1
pyrus_communis pycom04g12770
rosa_chinensis RchiOBHm_Chr3g0464511
rosa_laevigata RLG00000024689
rosa_roxburghii Rroxscaffold_6G00415600
rosa_rugosa Rorug03G0008900 Rorug03G0072800
rosa_samantha Rh3BG135100 Rh3CG137700 Rh3DG136400
rosa_wichuraiana Rw3G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
Acc65I GGTACC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 428
AccI GTMKAC 2 cut(s) 75, 87
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 3 cut(s) 267, 344, 430
AfiI CCNNNNNNNGG 2 cut(s) 438, 439
AgsI TTSAA 4 cut(s) 65, 181, 374, 486
AluBI AGCT 3 cut(s) 212, 340, 367
AluI AGCT 3 cut(s) 212, 340, 367
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 393
AoxI GGCC 3 cut(s) 27, 69, 159
ApeKI GCWGC 2 cut(s) 48, 209
Asp718I GGTACC 1 cut(s) 428
AspS9I GGNCC 3 cut(s) 69, 159, 508
AsuHPI GGTGA 4 cut(s) 16, 107, 334, 418
AvaII GGWCC 1 cut(s) 508
AxyI CCTNAGG 1 cut(s) 243
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 428
BbvI GCAGC 2 cut(s) 60, 221
BccI CCATC 1 cut(s) 403
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 49, 210
BlsI GCNGC 2 cut(s) 50, 211
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 69, 159, 508
BmiI GGNNCC 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 117, 343
BmuI ACTGGG 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 439
Bse1I ACTGG 1 cut(s) 350
Bse21I CCTNAGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 438, 439
BseMII CTCAG 2 cut(s) 219, 234
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 60, 221
BshFI GGCC 3 cut(s) 29, 71, 161
BshNI GGYRCC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 438, 439
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 3 cut(s) 29, 71, 161
Bsp143I GATC 2 cut(s) 193, 385
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 3 cut(s) 29, 71, 161
BspCNI CTCAG 2 cut(s) 220, 235
BspLI GGNNCC 1 cut(s) 430
BspPI GGATC 1 cut(s) 393
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 428
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 193, 385
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 228, 243
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 2 cut(s) 196, 388
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 193, 385
BstPAI GACNNNNGTC 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 60, 221
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 3 cut(s) 29, 71, 161
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
Cfr13I GGNCC 3 cut(s) 69, 159, 508
Csp6I GTAC 3 cut(s) 266, 343, 429
CviAII CATG 1 cut(s) 31
CviJI RGCY 7 cut(s) 29, 71, 161, 212, 241, 340, 367
CviKI_1 RGCY 7 cut(s) 29, 71, 161, 212, 241, 340, 367
CviQI GTAC 3 cut(s) 266, 343, 429
DdeI CTNAG 2 cut(s) 228, 243
DpnI GATC 2 cut(s) 195, 387
DpnII GATC 2 cut(s) 193, 385
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 508
Eco81I CCTNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 32, 251, 261, 278, 446, 468
FatI CATG 1 cut(s) 30
FblI GTMKAC 2 cut(s) 75, 87
Fnu4HI GCNGC 2 cut(s) 49, 210
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 49, 210
FspBI CTAG 1 cut(s) 309
GluI GCNGC 2 cut(s) 49, 210
HaeIII GGCC 3 cut(s) 29, 71, 161
Hin1II CATG 1 cut(s) 34
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 140, 398
HphI GGTGA 4 cut(s) 16, 107, 334, 418
Hpy166II GTNNAC 2 cut(s) 76, 88
Hpy188I TCNGA 4 cut(s) 193, 229, 236, 390
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 76, 88
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 108, 209, 356
HpyF3I CTNAG 2 cut(s) 228, 243
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 34
KpnI GGTACC 1 cut(s) 432
Kzo9I GATC 2 cut(s) 193, 385
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 142, 153, 182, 255, 331, 389, 504
Lsp1109I GCAGC 2 cut(s) 60, 221
LweI GCATC 2 cut(s) 117, 343
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 95, 493
MalI GATC 2 cut(s) 195, 387
MboI GATC 2 cut(s) 193, 385
MboII GAAGA 1 cut(s) 53
MflI RGATCY 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 1 cut(s) 392
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 149, 392
MnlI CCTC 7 cut(s) 9, 113, 164, 238, 313, 376, 413
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 484
NcoI CCATGG 1 cut(s) 30
NdeII GATC 2 cut(s) 193, 385
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 2 cut(s) 95, 493
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 484
PkrI GCNGC 2 cut(s) 50, 211
PleI GAGTC 2 cut(s) 148, 392
PpsI GAGTC 2 cut(s) 148, 392
PpuMI RGGWCCY 1 cut(s) 508
PshAI GACNNNNGTC 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 3 cut(s) 69, 159, 508
PspPPI RGGWCCY 1 cut(s) 508
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 3 cut(s) 267, 344, 430
RsaNI GTAC 3 cut(s) 266, 343, 429
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 49, 210
Sau3AI GATC 2 cut(s) 193, 385
Sau96I GGNCC 3 cut(s) 69, 159, 508
SchI GAGTC 2 cut(s) 149, 392
SetI ASST 9 cut(s) 97, 153, 186, 214, 249, 324, 342, 369, 513
SfaNI GCATC 2 cut(s) 117, 343
SinI GGWCC 1 cut(s) 508
Sse9I AATT 1 cut(s) 392
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 87, 135, 297
TasI AATT 1 cut(s) 392
TatI WGTACW 1 cut(s) 342
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 95, 493
TseI GCWGC 2 cut(s) 48, 209
Tsp45I GTSAC 2 cut(s) 95, 493
TspDTI ATGAA 1 cut(s) 266
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 75, 87
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.