FvH4_6g12670

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015068
Physical Location & Seq
Forward (+)
7670657 .. 7671929
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12670.t1

Sequence Viewer

Length: 486 bp
ATGGTGAAGGATAGGAGGATTGGTGTGGCCATGGACTTCTCCAAGAGCAGCAAGAACGCTCTTCAATGGGCTATTGACAACTTGGTCGACAAAGGTGACACCCTACACATCATCCACATCAACAACAACAAACACGATGAGTCTCGCAACGTCCTCTGGGCCAAATCTGGTTCTCCTCTTATTCCATTGTCTGAGTTTAGAGAGCTCGAGGTGATGAAAAAGTATGGTGTGCCGACTGATATGGAGGTGCTTGATATGCTTGACACTGTTTCTAGGCAGAAAGAGGTGACCATTATTACAAAGGTGTACTGGGGAGATGCAAGGGAGAAGCTTCTTCAAGCAGTTGAGGATCTGAAACTAGACTCTTTGGTGATGGGAAGCAGAGGACTTGGCACCCTCAAAAGGATTGTACTTGGAAGTGTGAGCAACTATGTGATGACACAGGCTCCAATCCCTGTGACCATCGTCAAGGACTTTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

162

Amino Acids

18.14

Weight (kDa)

7.93

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 157 3.3e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53990 AT3G53990
fragaria_vesca FvH4_6g12670
malus_domestica MD04G1139800.v1.1 MD12G1155300.v1.1
prunus_persica Prupe.6G265200_v2.0.a1
pyrus_communis pycom04g12770
rosa_chinensis RchiOBHm_Chr3g0464511
rosa_laevigata RLG00000024689
rosa_roxburghii Rroxscaffold_6G00415600
rosa_rugosa Rorug03G0008900 Rorug03G0072800
rosa_samantha Rh3BG135100 Rh3CG137700 Rh3DG136400
rosa_wichuraiana Rw3G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 87
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 2 cut(s) 308, 411
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 2 cut(s) 65, 338
AluBI AGCT 2 cut(s) 205, 331
AluI AGCT 2 cut(s) 205, 331
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 27, 159
ApeKI GCWGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 5 cut(s) 16, 107, 223, 298, 382
AvaI CYCGRG 1 cut(s) 206
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 60
BccI CCATC 2 cut(s) 367, 470
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 273, 359
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 394, 447
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 430, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 2 cut(s) 29, 161
BshNI GGYRCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 2 cut(s) 29, 161
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 349
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 2 cut(s) 29, 161
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 394, 447
BspPI GGATC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 464
BstPI GGTNACC 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 2 cut(s) 29, 161
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 307, 410
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 29, 71, 161, 205, 331, 446
CviKI_1 RGCY 6 cut(s) 29, 71, 161, 205, 331, 446
CviQI GTAC 2 cut(s) 307, 410
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 34
FaiI YATR 5 cut(s) 32, 225, 242, 257, 432
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 2 cut(s) 273, 359
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 2 cut(s) 29, 161
Hin1II CATG 1 cut(s) 34
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 140, 362
HphI GGTGA 5 cut(s) 16, 107, 223, 298, 382
Hpy166II GTNNAC 2 cut(s) 88, 307
Hpy188I TCNGA 2 cut(s) 193, 354
Hpy8I GTNNAC 2 cut(s) 88, 307
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 5 cut(s) 142, 153, 295, 428, 468
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 273, 359
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 95, 286, 457
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 2 cut(s) 53, 326
MfeI CAATTG 1 cut(s) 481
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 1 cut(s) 481
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 149, 356
MnlI CCTC 9 cut(s) 9, 164, 186, 202, 238, 277, 340, 377, 407
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
MunI CAATTG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 256
NcoI CCATGG 1 cut(s) 30
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 394, 447
NmuCI GTSAC 3 cut(s) 95, 286, 457
PaeR7I CTCGAG 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 2 cut(s) 148, 356
PpsI GAGTC 2 cut(s) 148, 356
PshAI GACNNNNGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 207
PspEI GGTNACC 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 394, 447
PspPI GGNCC 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 206
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 2 cut(s) 308, 411
RsaNI GTAC 2 cut(s) 307, 410
SacI GAGCTC 1 cut(s) 207
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 2 cut(s) 149, 356
SduI GDGCHC 1 cut(s) 207
SetI ASST 8 cut(s) 97, 153, 207, 213, 249, 288, 306, 333
SfaNI GCATC 1 cut(s) 307
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 273, 359
SstI GAGCTC 1 cut(s) 207
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 87, 207
TasI AATT 1 cut(s) 481
TatI WGTACW 2 cut(s) 306, 409
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 3 cut(s) 95, 286, 457
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 3 cut(s) 95, 286, 457
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 273, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.