MD12G1155300.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015068
Physical Location & Seq
Reverse (-)
23575695 .. 23577750
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1155300.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGGAAAGGATAGGAAGATTGGTGTGGCGATGGACTTCTCGAAGAGCAGCAAGAACGCTTTGGAATGGGCGATTGCCAACTTGGCTGACAAGGGTGACACCCTTTATATCATCCACATCAACCCCAACTCCCTCGACGAGTCCCGCACCCAGCTCTGGGCCCAATCCGGTTCTCCTCTGATTCCATTGACAGAGTTTAGGGAGCCTGAGATTATGACGAAGTACGGTGTCCAAACTGATACAGAAGTTCTTGACACACTCGACACTGCTTCCAGGCAGAGAGAGGTGAATGTTGTGACAAAATTGTATTGGGGAGATGCAAGGGAGAAGCTGCTTCAAGCAGTTGAAGATCTGAAACTGGACTCTTTGGTCATGGGGAGCAGAGGCCTTGGCACCATCAAAAGGATCCTACTGGGGAGTGTGAGCAACTATGTGCTCACGAATGCTCCAATCCCTGTGACCGTCGTCAAGGACCCAAGCATGCAACACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

165

Amino Acids

18.24

Weight (kDa)

5.91

Isoelectric Point (pI)

24.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 157 1.2e-32 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53990 AT3G53990
fragaria_vesca FvH4_6g12670
malus_domestica MD04G1139800.v1.1 MD12G1155300.v1.1
prunus_persica Prupe.6G265200_v2.0.a1
pyrus_communis pycom04g12770
rosa_chinensis RchiOBHm_Chr3g0464511
rosa_laevigata RLG00000024689
rosa_roxburghii Rroxscaffold_6G00415600
rosa_rugosa Rorug03G0008900 Rorug03G0072800
rosa_samantha Rh3BG135100 Rh3CG137700 Rh3DG136400
rosa_wichuraiana Rw3G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 392
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 400, 413
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 3 cut(s) 156, 157, 402
AgsI TTSAA 2 cut(s) 338, 347
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 2 cut(s) 154, 331
AluI AGCT 2 cut(s) 154, 331
Alw21I GWGCWC 1 cut(s) 438
AlwI GGATC 2 cut(s) 400, 413
AoxI GGCC 2 cut(s) 159, 385
ApaI GGGCCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 48, 331
AspS9I GGNCC 3 cut(s) 159, 160, 472
AsuHPI GGTGA 2 cut(s) 107, 298
AvaII GGWCC 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BamHI GGATCC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 60, 318
BccI CCATC 2 cut(s) 25, 404
BciT130I CCWGG 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 49, 332
BlsI GCNGC 2 cut(s) 50, 333
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 159, 160, 472
BmiI GGNNCC 5 cut(s) 161, 204, 394, 407, 474
BmrFI CCNGG 1 cut(s) 274
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 422
BoxI GACNNNNGTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 157, 402
Bse1I ACTGG 2 cut(s) 363, 417
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 156, 157, 402
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 363, 417
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 60, 318
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 2 cut(s) 161, 387
BshNI GGYRCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 156, 157, 402
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 2 cut(s) 161, 387
Bsp120I GGGCCC 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 163, 438
Bsp143I GATC 2 cut(s) 349, 405
BspACI CCGC 1 cut(s) 145
BspANI GGCC 2 cut(s) 161, 387
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 5 cut(s) 161, 204, 394, 407, 474
BspPI GGATC 2 cut(s) 400, 413
BspQI GCTCTTC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 363, 417
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 2 cut(s) 349, 405
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 227, 463
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 2 cut(s) 352, 408
BstMBI GATC 2 cut(s) 349, 405
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 484
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 60, 318
BstX2I RGATCY 2 cut(s) 349, 405
BstYI RGATCY 2 cut(s) 349, 405
BsuRI GGCC 2 cut(s) 161, 387
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 3 cut(s) 159, 160, 472
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 373, 481
CviJI RGCY 6 cut(s) 86, 154, 161, 205, 331, 387
CviKI_1 RGCY 6 cut(s) 86, 154, 161, 205, 331, 387
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 351, 407
DpnII GATC 2 cut(s) 349, 405
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 2 cut(s) 376, 484
FaiI YATR 5 cut(s) 108, 215, 374, 432, 482
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 372, 480
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 49, 332
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 49, 332
GluI GCNGC 2 cut(s) 49, 332
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 2 cut(s) 161, 387
HapII CCGG 1 cut(s) 168
Hin1II CATG 2 cut(s) 376, 484
HinfI GANTC 3 cut(s) 140, 181, 362
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 107, 298
Hpy188I TCNGA 2 cut(s) 180, 354
Hpy188III TCNNGA 3 cut(s) 40, 251, 439
Hpy99I CGWCG 2 cut(s) 140, 467
HpyCH4III ACNGT 2 cut(s) 227, 463
HpyCH4V TGCA 2 cut(s) 320, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 2 cut(s) 376, 484
Kzo9I GATC 2 cut(s) 349, 405
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 3 cut(s) 202, 378, 451
LpnPI CCDG 9 cut(s) 142, 164, 181, 219, 259, 286, 344, 398, 468
Lsp1109I GCAGC 2 cut(s) 60, 318
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 3 cut(s) 95, 295, 457
MalI GATC 2 cut(s) 351, 407
MboI GATC 2 cut(s) 349, 405
MboII GAAGA 3 cut(s) 28, 55, 359
MflI RGATCY 2 cut(s) 349, 405
MhlI GDGCHC 2 cut(s) 163, 438
MluCI AATT 1 cut(s) 302
MlyI GAGTC 2 cut(s) 149, 356
MnlI CCTC 4 cut(s) 143, 186, 277, 377
MseI TTAA 1 cut(s) 493
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 349, 405
NlaIII CATG 2 cut(s) 376, 484
NlaIV GGNNCC 5 cut(s) 161, 204, 394, 407, 474
NmuCI GTSAC 3 cut(s) 95, 295, 457
NspI RCATGY 1 cut(s) 484
PaeI GCATGC 1 cut(s) 484
PceI AGGCCT 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 38
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 50, 333
PleI GAGTC 2 cut(s) 148, 356
PpsI GAGTC 2 cut(s) 148, 356
PpuMI RGGWCCY 1 cut(s) 472
PshAI GACNNNNGTC 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 5 cut(s) 161, 204, 394, 407, 474
PspOMI GGGCCC 1 cut(s) 159
PspPI GGNCC 3 cut(s) 159, 160, 472
PspPPI RGGWCCY 1 cut(s) 472
PsuI RGATCY 2 cut(s) 349, 405
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 493
SatI GCNGC 2 cut(s) 49, 332
Sau3AI GATC 2 cut(s) 349, 405
Sau96I GGNCC 3 cut(s) 159, 160, 472
SchI GAGTC 2 cut(s) 149, 356
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 2 cut(s) 163, 438
SetI ASST 3 cut(s) 156, 288, 333
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 472
SphI GCATGC 1 cut(s) 484
Sse9I AATT 1 cut(s) 302
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 1 cut(s) 145
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 227, 463
TaqI TCGA 3 cut(s) 41, 135, 261
TasI AATT 1 cut(s) 302
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 493
Tru9I TTAA 1 cut(s) 493
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 3 cut(s) 95, 295, 457
TseI GCWGC 2 cut(s) 48, 331
Tsp45I GTSAC 3 cut(s) 95, 295, 457
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 472
XceI RCATGY 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.