Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

664166 .. 666892

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCAAGATTCAAAAGAAAAGTTGTTATTATAGATGGGGTGAGGCAAGATGAGGGCACCATCACCAACTATATGTTGGTGGCATGTATGGTTGCTGCCATGGGTGGTCTCATTTTCGGTTATGACTCAGGAGGGGTGGCTTCAAGGGAATTCTTCCTGAAGAAGTTTTTTCCAGCCTTATTCCCGATAGACAGTAATGAAAAGAATCACGCCAACCTATACTGCAAGGAACACAGAAAACAGTACTGTGGCCGAAACGTCTCCATGTGCCTTGCTGGACTTATCTACTTGGTCGGCGTTAGCATAAGCACAGTTGGGATAGTAGTGGCGAATTATGCGAACTATTTGACTGCTGATATAAAGGGTGGATGGGGATGGAGAATTGCTTTGAGTATCGCAATTATCCCAGCACTAATGCTTGGTGTTGGGTCTCTCTTCCTACCTAACTCTCCCAATTCTATGCTTGAAAGAGGCCAATCTGACAAGGCCAAAGAGTTGTTACAAAAACTACGCGGCGATAGTGATGTGGATCAGGAATTTCAGGACCTAGTTTTTGCATCCGAGGTTGCGAAAAAGGTAGACAATCCGTGGAAGGACATAATGAAGCCAAGATATAGGCCTTACCTTGTCATGTGCATTCTTATTCCATTTTTCCAGCAGTTCTCTGGCATTAATGCCATCATGTTCTATGCACCTCTTCTCTTCAGGGCTCTAGGCTTCGGTGAGAAGGCTTTGATGCTGTCTTCGGCCATCACTGGAGTTGTTAATGCCGTTTCCACTTGTGTTTCTATTGCCTTGGTTGACAGTAGTGGGAGGAGGCCTTTGCTCATTGTAGGTGGTATTCAAATGTCTATTTGTCAGGCAGCAATAGCTACCTTTATCGCCGCCAAGTTTGGAGTCTCGGGTCTGGGGGCTTTAACAAAAAGCGAAACGGATTTGATGGTAGCGCTCATTTGCTTCTATGTAGCAGCATTTGCATGGTCTTGGGGTCCTTTGGGTTGGTTAGTACCAAGTGAGATCTGCCCATTAGAGATCAGATCAGCAGCTAATGCTCTCAATGTCTCTGTGAACATGCTTTTCACCTTTGTGATTGCTCAATCTTCCTTTCTTATGTTTTGCCACCTCAAGTTTGGCCTCTTCTATCTCTTTGCCGGCTTCTGCGTGATCATGACCGTCTTTATATACTTCTTCCTGCCGGAGACCAAGCACGTCCCGATTGAAGATATGAACTCAGTGTGGAAGGAGCATTGGTTCTGGGGGAAGTATATCCCCGACGATGCTCTTCCTGACCGTAACGCATTTCGGAATCTCCATGTAGACTACTCTAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

444

Amino Acids

49.38

Weight (kDa)

8.53

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	102 - 413	3.5e-84	Sugar (and other) transporter
MFS_1	PF07690	106 - 362	7.5e-12	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccI	GTMKAC	2 cut(s)	579, 1317
AccII	CGCG	1 cut(s)	513
AciI	CCGC	2 cut(s)	513, 885
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	2 cut(s)	250, 747
AcsI	RAATTY	2 cut(s)	149, 536
AcuI	CTGAAG	2 cut(s)	179, 688
AfaI	GTAC	2 cut(s)	245, 1008
AfeI	AGCGCT	1 cut(s)	948
AgsI	TTSAA	5 cut(s)	13, 144, 467, 845, 1220
AjiI	CACGTC	1 cut(s)	1210
AleI	CACNNNNGTG	1 cut(s)	1085
AloI	GAACNNNNNNTCC	2 cut(s)	1235, 1267
AluBI	AGCT	2 cut(s)	872, 1046
AluI	AGCT	2 cut(s)	872, 1046
Alw26I	GTCTC	6 cut(s)	113, 265, 435, 904, 1066, 1193
AlwI	GGATC	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	901
Aor51HI	AGCGCT	1 cut(s)	948
AoxI	GGCC	7 cut(s)	250, 472, 486, 617, 747, 818, 1132
ApeKI	GCWGC	4 cut(s)	95, 863, 968, 1043
ApoI	RAATTY	2 cut(s)	149, 536
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AseI	ATTAAT	1 cut(s)	672
AspLEI	GCGC	1 cut(s)	949
AspS9I	GGNCC	2 cut(s)	544, 989
AsuHPI	GGTGA	4 cut(s)	52, 55, 734, 1072
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	2 cut(s)	544, 989
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	82, 875, 980, 1055
BccI	CCATC	7 cut(s)	29, 68, 363, 369, 686, 758, 934
BceAI	ACGGC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	1164
BcoDI	GTCTC	6 cut(s)	113, 265, 435, 904, 1066, 1193
BfaI	CTAG	2 cut(s)	548, 713
BfoI	RGCGCY	1 cut(s)	950
BglII	AGATCT	1 cut(s)	1017
BisI	GCNGC	6 cut(s)	96, 514, 864, 885, 969, 1044
BlsI	GCNGC	6 cut(s)	97, 515, 865, 886, 970, 1045
BmcAI	AGTACT	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	544, 989
BmeT110I	CYCGRG	1 cut(s)	901
BmgBI	CACGTC	1 cut(s)	1210
BmgT120I	GGNCC	2 cut(s)	544, 989
BmiI	GGNNCC	2 cut(s)	58, 990
BmsI	GCATC	3 cut(s)	566, 726, 1267
BpiI	GAAGAC	1 cut(s)	735
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	528
BsaI	GGTCTC	3 cut(s)	113, 435, 1193
BsaJI	CCNNGG	4 cut(s)	99, 561, 587, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	1235, 1265
Bse118I	RCCGGY	1 cut(s)	1151
Bse1I	ACTGG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	99, 561, 587, 795
BseGI	GGATG	3 cut(s)	374, 380, 557
BseJI	GATNNNNATC	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	141, 1245
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	1 cut(s)	829
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	82, 875, 980, 1055
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	7 cut(s)	252, 474, 488, 619, 749, 820, 1134
BshNI	GGYRCC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	1152, 1196
BslFI	GGGAC	1 cut(s)	1196
BsmAI	GTCTC	6 cut(s)	113, 265, 435, 904, 1066, 1193
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	1196
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	7 cut(s)	252, 474, 488, 619, 749, 820, 1134
Bso31I	GGTCTC	3 cut(s)	113, 435, 1193
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	59, 712
Bsp143I	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	513, 885
BspANI	GGCC	7 cut(s)	252, 474, 488, 619, 749, 820, 1134
BspCNI	CTCAG	2 cut(s)	140, 1244
BspFNI	CGCG	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	1167
BspLI	GGNNCC	2 cut(s)	58, 990
BspPI	GGATC	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	1287
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	3 cut(s)	113, 435, 1193
BsrFI	RCCGGY	1 cut(s)	1151
BsrI	ACTGG	1 cut(s)	760
BssAI	RCCGGY	1 cut(s)	1151
BssECI	CCNNGG	4 cut(s)	99, 561, 587, 795
BssMI	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
BssT1I	CCWWGG	2 cut(s)	99, 795
Bst4CI	ACNGT	7 cut(s)	194, 243, 248, 313, 806, 1174, 1292
Bst6I	CTCTTC	5 cut(s)	440, 702, 707, 1142, 1287
BstAPI	GCANNNNNTGC	2 cut(s)	974, 1049
BstC8I	GCNNGC	1 cut(s)	1153
BstDEI	CTNAG	2 cut(s)	127, 1231
BstDSI	CCRYGG	2 cut(s)	99, 587
BstF5I	GGATG	3 cut(s)	374, 380, 557
BstFNI	CGCG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	950
BstHHI	GCGC	1 cut(s)	949
BstKTI	GATC	5 cut(s)	532, 1020, 1035, 1040, 1167
BstMAI	GTCTC	6 cut(s)	113, 265, 435, 904, 1066, 1193
BstMBI	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 869, 974, 1049
BstNSI	RCATGY	2 cut(s)	87, 1075
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	4 cut(s)	82, 875, 980, 1055
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	1 cut(s)	1017
BstYI	RGATCY	1 cut(s)	1017
BsuRI	GGCC	7 cut(s)	252, 474, 488, 619, 749, 820, 1134
BtgI	CCRYGG	2 cut(s)	99, 587
BtrI	CACGTC	1 cut(s)	1210
BtsCI	GGATG	3 cut(s)	374, 380, 557
BtsIMutI	CAGTG	2 cut(s)	753, 1239
Cac8I	GCNNGC	1 cut(s)	1153
CciI	TCATGA	1 cut(s)	1167
CfoI	GCGC	1 cut(s)	949
Cfr10I	RCCGGY	1 cut(s)	1151
Cfr13I	GGNCC	2 cut(s)	544, 989
Csp6I	GTAC	2 cut(s)	244, 1007
CviAII	CATG	9 cut(s)	84, 100, 265, 631, 682, 978, 1072, 1168, 1313
CviQI	GTAC	2 cut(s)	244, 1007
DdeI	CTNAG	2 cut(s)	127, 1231
DpnI	GATC	5 cut(s)	531, 1019, 1034, 1039, 1166
DpnII	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
EaeI	YGGCCR	2 cut(s)	250, 747
Eam1104I	CTCTTC	5 cut(s)	440, 702, 707, 1142, 1287
EarI	CTCTTC	5 cut(s)	440, 702, 707, 1142, 1287
Eco130I	CCWWGG	2 cut(s)	99, 795
Eco147I	AGGCCT	2 cut(s)	619, 820
Eco24I	GRGCYC	1 cut(s)	712
Eco31I	GGTCTC	3 cut(s)	113, 435, 1193
Eco47I	GGWCC	2 cut(s)	544, 989
Eco47III	AGCGCT	1 cut(s)	948
Eco57I	CTGAAG	2 cut(s)	179, 688
Eco88I	CYCGRG	1 cut(s)	901
EcoO109I	RGGNCCY	2 cut(s)	544, 989
EcoRI	GAATTC	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	99, 795
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	99, 795
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	9 cut(s)	87, 103, 268, 634, 685, 981, 1075, 1171, 1316
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	9 cut(s)	83, 99, 264, 630, 681, 977, 1071, 1167, 1312
FbaI	TGATCA	1 cut(s)	1164
FblI	GTMKAC	2 cut(s)	579, 1317
Fnu4HI	GCNGC	6 cut(s)	96, 514, 864, 885, 969, 1044
FokI	GGATG	3 cut(s)	381, 387, 544
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	6 cut(s)	96, 514, 864, 885, 969, 1044
FspBI	CTAG	2 cut(s)	548, 713
GlaI	GCGC	1 cut(s)	948
GluI	GCNGC	6 cut(s)	96, 514, 864, 885, 969, 1044
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	950
HaeIII	GGCC	7 cut(s)	252, 474, 488, 619, 749, 820, 1134
HapII	CCGG	2 cut(s)	1152, 1196
HhaI	GCGC	1 cut(s)	949
Hin1II	CATG	9 cut(s)	87, 103, 268, 634, 685, 981, 1075, 1171, 1316
Hin6I	GCGC	1 cut(s)	947
HinP1I	GCGC	1 cut(s)	947
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	5 cut(s)	9, 125, 205, 897, 1306
HpaII	CCGG	2 cut(s)	1152, 1196
HphI	GGTGA	4 cut(s)	52, 55, 734, 1072
Hpy166II	GTNNAC	4 cut(s)	580, 802, 1069, 1318
Hpy188I	TCNGA	4 cut(s)	481, 562, 1037, 1305
Hpy188III	TCNNGA	8 cut(s)	129, 157, 184, 533, 542, 1168, 1213, 1286
Hpy8I	GTNNAC	4 cut(s)	580, 802, 1069, 1318
Hpy99I	CGWCG	1 cut(s)	1277
HpyAV	CCTTC	3 cut(s)	586, 721, 1234
HpyCH4III	ACNGT	7 cut(s)	194, 243, 248, 313, 806, 1174, 1292
HpyCH4IV	ACGT	2 cut(s)	258, 1209
HpyCH4V	TGCA	5 cut(s)	225, 557, 636, 692, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 869, 974, 1049
HpyF3I	CTNAG	2 cut(s)	127, 1231
HpySE526I	ACGT	2 cut(s)	258, 1209
Hsp92II	CATG	9 cut(s)	87, 103, 268, 634, 685, 981, 1075, 1171, 1316
HspAI	GCGC	1 cut(s)	947
KroI	GCCGGC	1 cut(s)	1151
KroNI	GCCGGC	1 cut(s)	1153
Ksp22I	TGATCA	1 cut(s)	1164
Kzo9I	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
LguI	GCTCTTC	1 cut(s)	1287
LmnI	GCTCC	1 cut(s)	1243
Lsp1109I	GCAGC	4 cut(s)	82, 875, 980, 1055
LweI	GCATC	3 cut(s)	566, 726, 1267
MaeI	CTAG	2 cut(s)	548, 713
MaeII	ACGT	2 cut(s)	258, 1209
MaeIII	GTNAC	2 cut(s)	498, 1292
MalI	GATC	5 cut(s)	531, 1019, 1034, 1039, 1166
MboI	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
MflI	RGATCY	1 cut(s)	1017
MhlI	GDGCHC	2 cut(s)	59, 712
MluCI	AATT	7 cut(s)	149, 331, 381, 399, 454, 536, 1327
MlyI	GAGTC	2 cut(s)	119, 906
MroNI	GCCGGC	1 cut(s)	1151
MseI	TTAA	3 cut(s)	672, 765, 917
MslI	CAYNNNNRTG	2 cut(s)	976, 1085
MspI	CCGG	2 cut(s)	1152, 1196
Mva1269I	GAATGC	1 cut(s)	636
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	335, 869, 974, 1049
NaeI	GCCGGC	1 cut(s)	1153
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
NgoMIV	GCCGGC	1 cut(s)	1151
NlaIII	CATG	9 cut(s)	87, 103, 268, 634, 685, 981, 1075, 1171, 1316
NlaIV	GGNNCC	2 cut(s)	58, 990
NspI	RCATGY	2 cut(s)	87, 1075
OliI	CACNNNNGTG	1 cut(s)	1085
PagI	TCATGA	1 cut(s)	1167
PceI	AGGCCT	2 cut(s)	619, 820
PciSI	GCTCTTC	1 cut(s)	1287
PctI	GAATGC	1 cut(s)	636
PdiI	GCCGGC	1 cut(s)	1153
PfeI	GAWTC	3 cut(s)	9, 205, 1306
PkrI	GCNGC	6 cut(s)	97, 515, 865, 886, 970, 1045
PleI	GAGTC	2 cut(s)	119, 905
PpsI	GAGTC	2 cut(s)	119, 905
PpuMI	RGGWCCY	2 cut(s)	544, 989
PshBI	ATTAAT	1 cut(s)	672
Psp5II	RGGWCCY	2 cut(s)	544, 989
PspFI	CCCAGC	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	58, 990
PspPI	GGNCC	2 cut(s)	544, 989
PspPPI	RGGWCCY	2 cut(s)	544, 989
PsuI	RGATCY	1 cut(s)	1017
RsaI	GTAC	2 cut(s)	245, 1008
RsaNI	GTAC	2 cut(s)	244, 1007
RseI	CAYNNNNRTG	2 cut(s)	976, 1085
SapI	GCTCTTC	1 cut(s)	1287
SaqAI	TTAA	3 cut(s)	672, 765, 917
SatI	GCNGC	6 cut(s)	96, 514, 864, 885, 969, 1044
Sau3AI	GATC	5 cut(s)	529, 1017, 1032, 1037, 1164
Sau96I	GGNCC	2 cut(s)	544, 989
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	2 cut(s)	119, 906
SduI	GDGCHC	2 cut(s)	59, 712
SfaNI	GCATC	3 cut(s)	566, 726, 1267
SinI	GGWCC	2 cut(s)	544, 989
SmiMI	CAYNNNNRTG	2 cut(s)	976, 1085
SmlI	CTYRAG	1 cut(s)	1124
SmoI	CTYRAG	1 cut(s)	1124
Sse9I	AATT	7 cut(s)	149, 331, 381, 399, 454, 536, 1327
SseBI	AGGCCT	2 cut(s)	619, 820
SsiI	CCGC	2 cut(s)	513, 885
SspMI	CTAG	2 cut(s)	548, 713
StuI	AGGCCT	2 cut(s)	619, 820
StyI	CCWWGG	2 cut(s)	99, 795
TaaI	ACNGT	7 cut(s)	194, 243, 248, 313, 806, 1174, 1292
TaiI	ACGT	2 cut(s)	261, 1212
TasI	AATT	7 cut(s)	149, 331, 381, 399, 454, 536, 1327
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	516, 887
TfiI	GAWTC	3 cut(s)	9, 205, 1306
Tru1I	TTAA	3 cut(s)	672, 765, 917
Tru9I	TTAA	3 cut(s)	672, 765, 917
TscAI	CASTG	2 cut(s)	760, 1239
TseI	GCWGC	4 cut(s)	95, 863, 968, 1043
TspDTI	ATGAA	3 cut(s)	213, 617, 1241
TspGWI	ACGGA	2 cut(s)	576, 947
TspRI	CASTG	2 cut(s)	760, 1239
VpaK11BI	GGWCC	2 cut(s)	544, 989
VspI	ATTAAT	1 cut(s)	672
XapI	RAATTY	2 cut(s)	149, 536
XceI	RCATGY	2 cut(s)	87, 1075
XcmI	CCANNNNNNNNNTGG	3 cut(s)	73, 662, 1127
XmiI	GTMKAC	2 cut(s)	579, 1317
XspI	CTAG	2 cut(s)	548, 713
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.