Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

7677449 .. 7678918

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCCGAGGAGGAAGTGAAGCTGTATGGAACTTGGAGGAGCCCATATAGTCGCAGGGTGGAAATAGCTCTGAAACTCAAAGGTGTCCAACACAAGTACTATGAAGAAGACCTGACCAACAAGAGCCCTGCGCTCCTCAAGTACAACCCGGTTCACAAGAAGATCCCCGTGCTTGTTCATGGTGAGAAAGTAATTGCAGAGTCTCATGTCATTCTGGAGTACATCGACGAGACCTGGAAGGGCTATAACATACTACCTAAAGATCCTTGTGAAAAGGCCAAGGCGCGCTTCTGGGCTAGGTTCATCGATGAAAAGTGTATTCCTGCGCTAAAGAAAGCTTGCGCGAGTATTGCTGAGGAGCGTGAGAAGGCCGTGGAAGAAGCATGTGAGCTTCTACAGCTGCTTGAAGATGAGCTCAAGCATAAGAAGTACTTTGGAGGAGATTGTATTGGACTGGTGGACATTGTTGCCAACTTCATAAGCCACTGGCTTAAAGTTGTCCAAGAAGTTGTGGGAGTGGAGCTGTTAACCATAAAGAAATTTCCCAGGCTGTGTGAATGGAGCGAGCACTTTGTGTGCCACCATGCTGTTAAGGACTGTCTGCCTCCTAAAGAAAAGCTTCTCGCTGTGTTCCATTCTCACTATGGAAGCGCTACAACTTCTAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

224

Amino Acids

25.69

Weight (kDa)

7.6

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 77	3e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 78	6.1e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 78	6.7e-17	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	118 - 191	1.9e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	286, 344
AclWI	GGATC	2 cut(s)	157, 257
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	539
AdeI	CACNNNGTG	1 cut(s)	574
AfaI	GTAC	4 cut(s)	98, 143, 221, 431
AfeI	AGCGCT	1 cut(s)	652
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	233, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	8 cut(s)	22, 68, 338, 391, 400, 415, 523, 619
AluI	AGCT	8 cut(s)	22, 68, 338, 391, 400, 415, 523, 619
Alw21I	GWGCWC	2 cut(s)	417, 570
Alw26I	GTCTC	2 cut(s)	207, 224
AlwI	GGATC	2 cut(s)	157, 257
Aor51HI	AGCGCT	1 cut(s)	652
AoxI	GGCC	3 cut(s)	3, 276, 369
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	6 cut(s)	133, 286, 288, 328, 344, 653
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	3 cut(s)	44, 128, 417
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	417, 570
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	2 cut(s)	235, 547
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	207, 224
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	654
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
BmcAI	AGTACT	2 cut(s)	98, 431
Bme1390I	CCNGG	3 cut(s)	149, 235, 547
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	3 cut(s)	149, 235, 547
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	122, 401
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	6, 279, 372, 545
Bse1I	ACTGG	2 cut(s)	459, 491
BseBI	CCWGG	2 cut(s)	235, 547
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	6, 279, 372, 545
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	459, 491
BsePI	GCGCGC	1 cut(s)	284
BseRI	GAGGAG	5 cut(s)	23, 52, 125, 371, 453
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	2 cut(s)	286, 344
BshFI	GGCC	3 cut(s)	5, 278, 371
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	417, 570
BsiSI	CCGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	207, 224
BsnI	GGCC	3 cut(s)	5, 278, 371
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	4 cut(s)	44, 128, 417, 570
Bsp143I	GATC	2 cut(s)	162, 262
BspANI	GGCC	3 cut(s)	5, 278, 371
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	2 cut(s)	286, 344
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	2 cut(s)	157, 257
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	459, 491
BssECI	CCNNGG	4 cut(s)	6, 279, 372, 545
BssHII	GCGCGC	1 cut(s)	284
BssMI	GATC	2 cut(s)	162, 262
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	235, 547
Bst4CI	ACNGT	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	286, 340, 566
BstDEI	CTNAG	2 cut(s)	354, 663
BstDSI	CCRYGG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	286, 344
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	6 cut(s)	133, 286, 288, 328, 344, 653
BstKTI	GATC	2 cut(s)	165, 265
BstMAI	GTCTC	2 cut(s)	207, 224
BstMBI	GATC	2 cut(s)	162, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 397
BstNI	CCWGG	2 cut(s)	235, 547
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	147, 233, 545
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	2 cut(s)	286, 344
BstV1I	GCAGC	1 cut(s)	387
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	162, 262
BstYI	RGATCY	2 cut(s)	162, 262
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	5, 278, 371
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	286, 340, 566
CfoI	GCGC	6 cut(s)	133, 286, 288, 328, 344, 653
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	4 cut(s)	97, 142, 220, 430
CviAII	CATG	4 cut(s)	179, 206, 384, 584
CviQI	GTAC	4 cut(s)	97, 142, 220, 430
DdeI	CTNAG	2 cut(s)	354, 663
DpnI	GATC	2 cut(s)	164, 264
DpnII	GATC	2 cut(s)	162, 262
DraIII	CACNNNGTG	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	3 cut(s)	44, 128, 417
Eco31I	GGTCTC	1 cut(s)	224
Eco47III	AGCGCT	1 cut(s)	652
Eco53kI	GAGCTC	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	233, 545
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	3 cut(s)	44, 128, 417
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	182, 209, 387, 587
FalI	AAGNNNNNCTT	6 cut(s)	272, 304, 416, 448, 603, 635
FatI	CATG	4 cut(s)	178, 205, 383, 583
Fnu4HI	GCNGC	1 cut(s)	401
FriOI	GRGCYC	3 cut(s)	44, 128, 417
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	6 cut(s)	132, 285, 287, 327, 343, 652
GluI	GCNGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	5, 278, 371
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	6 cut(s)	133, 286, 288, 328, 344, 653
Hin1II	CATG	4 cut(s)	182, 209, 387, 587
Hin6I	GCGC	6 cut(s)	131, 284, 286, 326, 342, 651
HinP1I	GCGC	6 cut(s)	131, 284, 286, 326, 342, 651
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	2 cut(s)	336, 617
HinfI	GANTC	1 cut(s)	200
HpaI	GTTAAC	1 cut(s)	528
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	154, 460, 528
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	154, 460, 528
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	232, 361
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 397
HpyF3I	CTNAG	2 cut(s)	354, 663
Hsp92II	CATG	4 cut(s)	182, 209, 387, 587
HspAI	GCGC	6 cut(s)	131, 284, 286, 326, 342, 651
KspAI	GTTAAC	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	162, 262
LmnI	GCTCC	5 cut(s)	39, 138, 358, 520, 561
Lsp1109I	GCAGC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	297
MalI	GATC	2 cut(s)	164, 264
MboI	GATC	2 cut(s)	162, 262
MboII	GAAGA	5 cut(s)	116, 119, 172, 389, 419
MflI	RGATCY	2 cut(s)	162, 262
MhlI	GDGCHC	4 cut(s)	44, 128, 417, 570
MluCI	AATT	2 cut(s)	192, 539
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	4, 30, 146, 349, 431, 615
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	3 cut(s)	492, 527, 591
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	149, 235, 547
MvaI	CCWGG	2 cut(s)	235, 547
MvnI	CGCG	2 cut(s)	286, 344
MwoI	GCNNNNNNNGC	2 cut(s)	350, 397
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	162, 262
NlaIII	CATG	4 cut(s)	182, 209, 387, 587
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	31
NspI	RCATGY	1 cut(s)	387
PauI	GCGCGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	618
PkrI	GCNGC	1 cut(s)	402
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	233, 545
PspGI	CCWGG	2 cut(s)	233, 545
PspN4I	GGNNCC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	162, 262
PteI	GCGCGC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	4 cut(s)	98, 143, 221, 431
RsaNI	GTAC	4 cut(s)	97, 142, 220, 430
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	492, 527, 591
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	2 cut(s)	162, 262
ScaI	AGTACT	2 cut(s)	98, 431
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	149, 235, 547
SduI	GDGCHC	4 cut(s)	44, 128, 417, 570
SfcI	CTRYAG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	137, 416
SmoI	CTYRAG	2 cut(s)	137, 416
Sse9I	AATT	2 cut(s)	192, 539
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	147, 233, 545
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	599
TaqI	TCGA	2 cut(s)	225, 306
TasI	AATT	2 cut(s)	192, 539
TatI	WGTACW	4 cut(s)	96, 141, 219, 429
Tru1I	TTAA	3 cut(s)	492, 527, 591
Tru9I	TTAA	3 cut(s)	492, 527, 591
TscAI	CASTG	1 cut(s)	491
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	117, 167, 292, 324, 466
TspRI	CASTG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	2 cut(s)	98, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.