Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

7672743 .. 7674102

Gene Structure 1360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAGAGGAAGTGAAGCTTTTTGGTGTTTGGGGAAGCCCTTTCAGTAAGAGAGTGGAAATGGCTCTGAAGCTGAAAGGTGTCGAATACGACTTCTTTGATGAGGACCTGCAAAACAAGAGTGAACTGCTTCTCAAATACAACCCAGTTCACAAGAAGATCCCTGTGCTCGTACACAAAGGAAAACCAATAGCAGAGTCTGCTATTATTCTTGAATACATAGATGAGACATGGGAGGGCTTTGCCCTTTTGCCTAAAGACCCTTATCAAAGAGCAACTGCTCGCTTTTGGGCCAGGTTCGTCGAGGAAAAGTGCATGCCTGCGATGTTCAAATGCTCTGTCGGTACAGAGGATCGTGAAAAGGCTGTGGAAGAAGCTTATGAGACTCTGAAACTGCTTGAAAATGAGCTCAAGGGTAAGAAGTTCTTTGGGGGAGAGGAGATTGGGTTTGTGGACATTGTTGCTGACTTCATAGGAGGCTACTGGCTTAGAGATTTTCAAGAGGTTGTCGGAATGGAGCTCTTAACAAAGGAGAAACTTCCCAAGCTATGTGAATGGAGTGATGAGTTTGTCAACCATGCTGTTATCAAGGAAGTTCTGCCTCCTAGAGATAAGCTTATTGCTTTCTTCCGCACCCGCTTTGGTTCAAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

219

Amino Acids

25.25

Weight (kDa)

5.47

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	4.3e-20	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 77	4.8e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 77	1.3e-14	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	116 - 193	7.3e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AciI	CCGC	2 cut(s)	631, 637
AclWI	GGATC	2 cut(s)	154, 360
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	174, 346
AgsI	TTSAA	5 cut(s)	215, 331, 401, 500, 648
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	7 cut(s)	19, 73, 377, 409, 520, 547, 616
AluI	AGCT	7 cut(s)	19, 73, 377, 409, 520, 547, 616
Alw21I	GWGCWC	3 cut(s)	171, 411, 522
Alw26I	GTCTC	2 cut(s)	221, 377
AlwI	GGATC	2 cut(s)	154, 360
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	106, 291
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	411, 522
Bbv12I	GWGCWC	3 cut(s)	171, 411, 522
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	221, 377
BfaI	CTAG	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	106, 291
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 431, 461
Bse1I	ACTGG	2 cut(s)	146, 488
BseBI	CCWGG	1 cut(s)	295
BseNI	ACTGG	2 cut(s)	146, 488
BseRI	GAGGAG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	3 cut(s)	171, 411, 522
BsmAI	GTCTC	2 cut(s)	221, 377
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	3 cut(s)	171, 411, 522
Bsp143I	GATC	2 cut(s)	159, 352
BspACI	CCGC	2 cut(s)	631, 637
BspANI	GGCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	154, 360
BsrI	ACTGG	2 cut(s)	146, 488
BssMI	GATC	2 cut(s)	159, 352
Bst2UI	CCWGG	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	283, 317, 321
BstDEI	CTNAG	1 cut(s)	488
BstKTI	GATC	2 cut(s)	162, 355
BstMAI	GTCTC	2 cut(s)	221, 377
BstMBI	GATC	2 cut(s)	159, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	283, 317, 321
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	106, 291
Csp6I	GTAC	2 cut(s)	173, 345
CviAII	CATG	3 cut(s)	231, 316, 578
CviQI	GTAC	2 cut(s)	173, 345
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	2 cut(s)	161, 354
DpnII	GATC	2 cut(s)	159, 352
Ecl136II	GAGCTC	2 cut(s)	409, 520
Eco24I	GRGCYC	2 cut(s)	411, 522
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	409, 520
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	2 cut(s)	409, 520
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	293
EcoT38I	GRGCYC	2 cut(s)	411, 522
FaeI	CATG	3 cut(s)	234, 319, 581
FaiI	YATR	8 cut(s)	221, 232, 317, 381, 473, 550, 579, 655
FalI	AAGNNNNNCTT	3 cut(s)	35, 410, 442
FatI	CATG	3 cut(s)	230, 315, 577
FauI	CCCGC	1 cut(s)	644
FriOI	GRGCYC	2 cut(s)	411, 522
FspBI	CTAG	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	234, 319, 581
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	3 cut(s)	17, 375, 614
HinfI	GANTC	2 cut(s)	197, 385
Hpy166II	GTNNAC	5 cut(s)	125, 151, 175, 454, 574
Hpy188I	TCNGA	3 cut(s)	69, 390, 512
Hpy188III	TCNNGA	3 cut(s)	212, 356, 500
Hpy8I	GTNNAC	5 cut(s)	125, 151, 175, 454, 574
Hpy99I	CGWCG	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	112, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	234, 319, 581
Kzo9I	GATC	2 cut(s)	159, 352
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	7 cut(s)	122, 159, 177, 280, 307, 333, 469
MaeI	CTAG	1 cut(s)	606
MalI	GATC	2 cut(s)	161, 354
MboI	GATC	2 cut(s)	159, 352
MboII	GAAGA	3 cut(s)	169, 383, 619
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	171, 411, 522
MlyI	GAGTC	2 cut(s)	206, 379
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	8 cut(s)	97, 229, 298, 343, 430, 470, 496, 612
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	159, 352
NlaIII	CATG	3 cut(s)	234, 319, 581
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	129
PleI	GAGTC	2 cut(s)	205, 379
PpsI	GAGTC	2 cut(s)	205, 379
PpuMI	RGGWCCY	1 cut(s)	106
Psp124BI	GAGCTC	2 cut(s)	411, 522
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	106, 291
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	2 cut(s)	174, 346
RsaNI	GTAC	2 cut(s)	173, 345
SacI	GAGCTC	2 cut(s)	411, 522
SaqAI	TTAA	1 cut(s)	524
Sau3AI	GATC	2 cut(s)	159, 352
Sau96I	GGNCC	2 cut(s)	106, 291
SchI	GAGTC	2 cut(s)	206, 379
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	171, 411, 522
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	319
SsiI	CCGC	2 cut(s)	631, 637
SspMI	CTAG	1 cut(s)	606
SstI	GAGCTC	2 cut(s)	411, 522
StyD4I	CCNGG	1 cut(s)	293
TaqI	TCGA	2 cut(s)	84, 303
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.