Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

2848183 .. 2849686

Gene Structure 1504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAACCAAGAAGAGCACGTAAAGCTTCTGGGCTTATGGGGAAGTCCTTTTAGCAAAAGAGTAGAGATGGTCCTAAAACTTAAGGGCATACCTTATGAGTACATTGAAGAAGATGTTTATGGAAACAGGAGCCCTATGCTTCTCAAGTACAACCCTATACACAAGAAGGTCCCTGTCCTCATCCACAATGGTAGATCGATAGCCGAATCATTGGTGATTGTCGAATACATCGAAGATACGTGGAAGACAACTCACACGATCTTGCCTCAAGATCCTTATGAACGTGCCATGGCCCGGTTTTGGGCTAAGTATGTGGATGAAAAGGTAATGTTAGCAGTGAAGAAAGCTTGTTGGGGACCGGAGAGTGAAAGAGAAAAAGAAGTGAAAGAGGCTTATGAGGGTTTGAAATGTTTAGAAAAGGAGCTTGGAGATAAACTTTTTTTCGGAGGAGAGACAATTGGATTTGTCGATATAGCAGCTGATTTCATAGGATATTGGTTAGGGATTTTCCAAGAAGCTTCAGGCGTCACGATCATGACCGCGGAGGAGTTTCCAAAACTTCAACGTTGGTCGGAAGATTTCGTGGGAAATAACTTTATTAAGGAAGTCTTGCCCCCTAAGGAGAAGCTCGTGGCTGTTTTGAAGGCCATGTTTGGAAGTGTTACATCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

224

Amino Acids

25.71

Weight (kDa)

5.56

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	5.6e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	11 - 80	5.9e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 79	1.6e-15	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	102 - 195	5.2e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	542
AciI	CCGC	2 cut(s)	540, 542
AclI	AACGTT	1 cut(s)	565
AclWI	GGATC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	101, 149
AfiI	CCNNNNNNNGG	3 cut(s)	294, 300, 301
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	107, 406, 563, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	6 cut(s)	25, 347, 424, 479, 518, 628
AluI	AGCT	6 cut(s)	25, 347, 424, 479, 518, 628
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	291, 645
ApeKI	GCWGC	1 cut(s)	476
AspS9I	GGNCC	4 cut(s)	70, 169, 292, 356
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	3 cut(s)	70, 169, 356
AxyI	CCTNAGG	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	3 cut(s)	70, 169, 356
BmgT120I	GGNCC	4 cut(s)	70, 169, 292, 356
BmiI	GGNNCC	3 cut(s)	131, 171, 357
BmrFI	CCNGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	128, 252
BpuMI	CCSGG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	197
BsaAI	YACGTR	2 cut(s)	19, 240
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	288, 540
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 300, 301
Bse21I	CCTNAGG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	288, 540
BseGI	GGATG	2 cut(s)	180, 322
BseLI	CCNNNNNNNGG	3 cut(s)	294, 300, 301
BseRI	GAGGAG	2 cut(s)	462, 560
BseXI	GCAGC	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	293, 647
BshVI	ATCGAT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	295, 359
BslFI	GGGAC	2 cut(s)	155, 369
BslI	CCNNNNNNNGG	3 cut(s)	294, 300, 301
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	155, 369
BsnI	GGCC	2 cut(s)	293, 647
Bsp1286I	GDGCHC	2 cut(s)	18, 134
Bsp143I	GATC	4 cut(s)	194, 258, 271, 531
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	2 cut(s)	540, 542
BspANI	GGCC	2 cut(s)	293, 647
BspDI	ATCGAT	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	131, 171, 357
BspPI	GGATC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	288, 540
BssMI	GATC	4 cut(s)	194, 258, 271, 531
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	629
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	80
BstBAI	YACGTR	2 cut(s)	19, 240
BstDEI	CTNAG	2 cut(s)	306, 618
BstDSI	CCRYGG	2 cut(s)	288, 540
BstF5I	GGATG	2 cut(s)	180, 322
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	4 cut(s)	197, 261, 274, 534
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	4 cut(s)	194, 258, 271, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	197
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	293, 647
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	2 cut(s)	288, 540
BtsCI	GGATG	2 cut(s)	180, 322
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
CciI	TCATGA	1 cut(s)	534
Cfr13I	GGNCC	4 cut(s)	70, 169, 292, 356
Cfr42I	CCGCGG	1 cut(s)	543
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	100, 148
CviAII	CATG	3 cut(s)	289, 535, 649
CviQI	GTAC	2 cut(s)	100, 148
DdeI	CTNAG	2 cut(s)	306, 618
DpnI	GATC	4 cut(s)	196, 260, 273, 533
DpnII	GATC	4 cut(s)	194, 258, 271, 531
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	70, 169, 356
Eco57I	CTGAAG	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	292, 538, 652
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	2 cut(s)	155, 369
FatI	CATG	3 cut(s)	288, 534, 648
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	2 cut(s)	167, 329
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	293, 647
HapII	CCGG	2 cut(s)	295, 359
HgaI	GACGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	292, 538, 652
HindIII	AAGCTT	3 cut(s)	23, 345, 516
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	295, 359
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	446, 574
Hpy188III	TCNNGA	3 cut(s)	269, 529, 535
HpyAV	CCTTC	2 cut(s)	160, 637
HpyCH4IV	ACGT	4 cut(s)	18, 239, 283, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	306, 618
HpySE526I	ACGT	4 cut(s)	18, 239, 283, 565
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	3 cut(s)	292, 538, 652
KspI	CCGCGG	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	194, 258, 271, 531
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	129, 421
LpnPI	CCDG	6 cut(s)	14, 112, 186, 308, 372, 507
Lsp1109I	GCAGC	1 cut(s)	488
MaeII	ACGT	4 cut(s)	18, 239, 283, 565
MaeIII	GTNAC	2 cut(s)	526, 661
MalI	GATC	4 cut(s)	196, 260, 273, 533
MboI	GATC	4 cut(s)	194, 258, 271, 531
MboII	GAAGA	7 cut(s)	23, 119, 122, 245, 256, 352, 587
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	18, 134
MluCI	AATT	2 cut(s)	456, 670
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	6 cut(s)	188, 276, 382, 391, 440, 538
MseI	TTAA	3 cut(s)	81, 600, 673
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	2 cut(s)	479, 542
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	2 cut(s)	295, 359
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	194, 258, 271, 531
NlaIII	CATG	3 cut(s)	292, 538, 652
NlaIV	GGNNCC	3 cut(s)	131, 171, 357
NmuCI	GTSAC	1 cut(s)	526
PagI	TCATGA	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	478
Ppu21I	YACGTR	2 cut(s)	19, 240
PpuMI	RGGWCCY	1 cut(s)	169
Psp1406I	AACGTT	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	131, 171, 357
PspPI	GGNCC	4 cut(s)	70, 169, 292, 356
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	2 cut(s)	101, 149
RsaNI	GTAC	2 cut(s)	100, 148
RseI	CAYNNNNRTG	1 cut(s)	533
SacII	CCGCGG	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	81, 600, 673
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	4 cut(s)	194, 258, 271, 531
Sau96I	GGNCC	4 cut(s)	70, 169, 292, 356
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	18, 134
Sfr303I	CCGCGG	1 cut(s)	543
SgrBI	CCGCGG	1 cut(s)	543
SinI	GGWCC	3 cut(s)	70, 169, 356
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	80, 143, 267
SmoI	CTYRAG	3 cut(s)	80, 143, 267
Sse9I	AATT	2 cut(s)	456, 670
SsiI	CCGC	2 cut(s)	540, 542
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	288
TaiI	ACGT	4 cut(s)	21, 242, 286, 568
TaqI	TCGA	4 cut(s)	197, 222, 231, 468
TasI	AATT	2 cut(s)	456, 670
TatI	WGTACW	2 cut(s)	99, 147
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	3 cut(s)	81, 600, 673
Tru9I	TTAA	3 cut(s)	81, 600, 673
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	4 cut(s)	17, 294, 333, 475
TspRI	CASTG	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	3 cut(s)	70, 169, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.