Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

10741179 .. 10742016

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G011070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTGGGGAGGACGTGAAGCTGTATGGAACTTGGAGGAGCCCGTATAGTCGCAGGGTTGAAATAGCTCTGAAACTCAAAGGTGTCCAACACAAGTACTATGAAGAAGACCTGACCAATAAGAGCCCTTCGCTCCTCAAGTACAACCCAGTTCACAAGAAGATCCCTGTGCTTGTTCATGGTGAGAAAGTAATTTCAGAGTCCCATGTCATTCTCGAGTACATCGACGAGACGTGGAAGGGCTATGACATACTGCCTAAAGATCCTTGTGAAAAGGCCAAGGCACGCTTCTGGGCTAGGTTCATCGATGAAAAGTGTCTTCCTGCGCTAAAGAAAGCTCTCGCGAGTATGGCTGAGGAGCGTGACAATGCCGTGGAAGAAGCATGTGAGCTTCTACAACTACTTGAAAATGAGCTCAAGCATAAGAAGTACTTTGGAGGAGATTGTATTGGACTGGTGGACATTGTTGCCAACTTCATAAGCCATTGGCTTAAAGTTCTTCAAGAAGTTGTGGGAGTGGAGCTGTTAACCATAAAGAAATTTCCCAAGCTATGCGAATGGAGTGAGAACTTTGTCTGCCATCATGCTGTTAAGGAATGTCTGCCTCCTAAAGACAAGCTTCTCACTTGGTTCCATTCTCACTATGGAAGCGCTACTACTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

222

Amino Acids

25.61

Weight (kDa)

7.62

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 77	4.3e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 78	6.9e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 78	1.2e-16	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	113 - 191	3.9e-12	Glutathione S-transferase, C-terminal domain
DUF7962	PF25907	115 - 191	1.8e-06	Domain of unknown function (DUF7962)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	344
AclWI	GGATC	2 cut(s)	157, 257
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	4 cut(s)	98, 143, 221, 431
AfeI	AGCGCT	1 cut(s)	652
AgsI	TTSAA	3 cut(s)	62, 407, 503
AjiI	CACGTC	2 cut(s)	16, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	8 cut(s)	22, 68, 338, 391, 415, 523, 550, 619
AluI	AGCT	8 cut(s)	22, 68, 338, 391, 415, 523, 550, 619
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	157, 257
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	652
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	539
AspLEI	GCGC	2 cut(s)	328, 653
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	215
BanII	GRGCYC	3 cut(s)	44, 128, 417
BarI	GAAGNNNNNNTAC	1 cut(s)	640
BbsI	GAAGAC	2 cut(s)	114, 311
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	588
BceAI	ACGGC	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	654
BmcAI	AGTACT	2 cut(s)	98, 431
BmeT110I	CYCGRG	1 cut(s)	215
BmgBI	CACGTC	2 cut(s)	16, 234
BmiI	GGNNCC	2 cut(s)	41, 632
BmrI	ACTGGG	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	114, 311
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	122, 401
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	279, 372
Bse1I	ACTGG	2 cut(s)	149, 459
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	279, 372
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	149, 459
BseRI	GAGGAG	4 cut(s)	52, 125, 371, 453
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	44, 128, 417
Bsp143I	GATC	2 cut(s)	162, 262
Bsp68I	TCGCGA	1 cut(s)	344
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	41, 632
BspPI	GGATC	2 cut(s)	157, 257
BsrI	ACTGG	2 cut(s)	149, 459
BssECI	CCNNGG	2 cut(s)	279, 372
BssMI	GATC	2 cut(s)	162, 262
BssT1I	CCWWGG	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	354, 663
BstDSI	CCRYGG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	328, 653
BstKTI	GATC	2 cut(s)	165, 265
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	162, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	387
BstUI	CGCG	1 cut(s)	344
BstV2I	GAAGAC	2 cut(s)	114, 311
BstX2I	RGATCY	2 cut(s)	162, 262
BstYI	RGATCY	2 cut(s)	162, 262
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	372
BtrI	CACGTC	2 cut(s)	16, 234
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	2 cut(s)	328, 653
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	4 cut(s)	97, 142, 220, 430
CviAII	CATG	4 cut(s)	179, 206, 384, 584
CviQI	GTAC	4 cut(s)	97, 142, 220, 430
DdeI	CTNAG	2 cut(s)	354, 663
DpnI	GATC	2 cut(s)	164, 264
DpnII	GATC	2 cut(s)	162, 262
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	3 cut(s)	44, 128, 417
Eco47III	AGCGCT	1 cut(s)	652
Eco53kI	GAGCTC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	3 cut(s)	44, 128, 417
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	4 cut(s)	182, 209, 387, 587
FalI	AAGNNNNNCTT	6 cut(s)	272, 304, 416, 448, 603, 635
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	4 cut(s)	178, 205, 383, 583
FriOI	GRGCYC	3 cut(s)	44, 128, 417
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	327, 652
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	328, 653
Hin1II	CATG	4 cut(s)	182, 209, 387, 587
Hin6I	GCGC	2 cut(s)	326, 651
HinP1I	GCGC	2 cut(s)	326, 651
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	1 cut(s)	200
HpaI	GTTAAC	1 cut(s)	528
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	154, 460, 528
Hpy188I	TCNGA	2 cut(s)	72, 199
Hpy188III	TCNNGA	3 cut(s)	215, 343, 503
Hpy8I	GTNNAC	3 cut(s)	154, 460, 528
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	138, 232
HpyCH4IV	ACGT	2 cut(s)	15, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	354, 663
HpySE526I	ACGT	2 cut(s)	15, 233
Hsp92II	CATG	4 cut(s)	182, 209, 387, 587
HspAI	GCGC	2 cut(s)	326, 651
KspAI	GTTAAC	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	162, 262
LmnI	GCTCC	4 cut(s)	39, 138, 358, 520
LpnPI	CCDG	7 cut(s)	40, 125, 162, 180, 277, 336, 440
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	2 cut(s)	15, 233
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	164, 264
MboI	GATC	2 cut(s)	162, 262
MboII	GAAGA	6 cut(s)	116, 119, 172, 311, 389, 491
MflI	RGATCY	2 cut(s)	162, 262
MhlI	GDGCHC	3 cut(s)	44, 128, 417
MluCI	AATT	2 cut(s)	192, 539
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	4, 30, 146, 349, 431, 615
MseI	TTAA	3 cut(s)	492, 527, 591
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	162, 262
NlaIII	CATG	4 cut(s)	182, 209, 387, 587
NlaIV	GGNNCC	2 cut(s)	41, 632
NmuCI	GTSAC	1 cut(s)	362
NruI	TCGCGA	1 cut(s)	344
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	41, 632
PsuI	RGATCY	2 cut(s)	162, 262
RruI	TCGCGA	1 cut(s)	344
RsaI	GTAC	4 cut(s)	98, 143, 221, 431
RsaNI	GTAC	4 cut(s)	97, 142, 220, 430
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	492, 527, 591
Sau3AI	GATC	2 cut(s)	162, 262
ScaI	AGTACT	2 cut(s)	98, 431
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	3 cut(s)	44, 128, 417
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	137, 215, 416
SmoI	CTYRAG	3 cut(s)	137, 215, 416
Sse9I	AATT	2 cut(s)	192, 539
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	2 cut(s)	18, 236
TaqI	TCGA	3 cut(s)	216, 225, 306
TasI	AATT	2 cut(s)	192, 539
TatI	WGTACW	4 cut(s)	96, 141, 219, 429
Tru1I	TTAA	3 cut(s)	492, 527, 591
Tru9I	TTAA	3 cut(s)	492, 527, 591
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	117, 167, 292, 324, 466
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	2 cut(s)	98, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.