Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032314.1

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

5332 .. 5739

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032314.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggctgaggaagaagcagtgaagctgtttggcacttggagaagcccttttagccgcagggtggaaatagctctgaagctcaaaggtgtcgacttcaaatactatgaagaggatctgaccaacaagagccatctgcttctcaaatacaacccagttcacaagaagattcctgtgctcgtccacaacgaaaaacctattgtagagtcccttgtcattcttgaatacattgacgagacctggaaagaaggattccccatattgcctaaagtcccttgtcaaagatcacatgcacgcttctgggctaggttccttgatgaaaaggtaataaaatacaatgctttgcatttggggactcgtttgttcgacagtgcttttagaaatgttaacttgtttagtagaaatagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

135

Amino Acids

15.96

Weight (kDa)

9.35

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	97, 221
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	25, 71, 79
AluI	AGCT	3 cut(s)	25, 71, 79
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	3 cut(s)	190, 254, 364
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	3 cut(s)	190, 254, 364
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	112, 281
BspACI	CCGC	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	112, 281
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	115, 284
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	112, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 373
Cac8I	GCNNGC	1 cut(s)	292
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	8 cut(s)	5, 25, 45, 54, 71, 79, 129, 302
CviKI_1	RGCY	8 cut(s)	5, 25, 45, 54, 71, 79, 129, 302
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	114, 283
DpnII	GATC	2 cut(s)	112, 281
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	236
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	105, 257, 288
FaqI	GGGAC	3 cut(s)	190, 254, 364
FatI	CATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	2 cut(s)	91, 385
HindII	GTYRAC	2 cut(s)	91, 385
HinfI	GANTC	4 cut(s)	166, 203, 249, 352
HpaI	GTTAAC	1 cut(s)	385
Hpy166II	GTNNAC	4 cut(s)	91, 157, 181, 385
Hpy188I	TCNGA	2 cut(s)	75, 117
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	4 cut(s)	91, 157, 181, 385
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	290, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	290
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	112, 281
LpnPI	CCDG	6 cut(s)	43, 165, 183, 223, 250, 283
MaeI	CTAG	1 cut(s)	303
MalI	GATC	2 cut(s)	114, 283
MboI	GATC	2 cut(s)	112, 281
MboII	GAAGA	3 cut(s)	23, 119, 175
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	177
MlyI	GAGTC	2 cut(s)	212, 346
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	384, 406
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	112, 281
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	166, 249
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	211, 346
PpsI	GAGTC	2 cut(s)	211, 346
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	384, 406
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	112, 281
SchI	GAGTC	2 cut(s)	212, 346
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	8 cut(s)	27, 73, 81, 88, 196, 239, 308, 324
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	90, 363
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	166, 249
Tru1I	TTAA	2 cut(s)	384, 406
Tru9I	TTAA	2 cut(s)	384, 406
TscAI	CASTG	2 cut(s)	24, 373
TspDTI	ATGAA	2 cut(s)	120, 330
TspRI	CASTG	2 cut(s)	24, 373
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.