Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

50576115 .. 50576517

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTGAGGAAGTGAAGCTTTTTGGTGTTTGGGGAAGCCCTTTCAGTCGGAGAGTGGAAATGGCTCTGAAGCTGAAAGGTGTCGAATACGAATACTTTGAAGAGGACCTGCAAAACAAGAGCGATTTGCTTCTCAAATACAACCCAGTTCACAAGAAGATCCCTGTGCTCCTACACAAAGGAAAACCAATAGCAGAGTCTGCTGTTATTCTTGAATACATCGATGAGACATGGAAGGGCTTTCCTCTATTGCCTAAAGACCCTTATCAAAGAGCCACAGCTCGGTTTTGGGCTAGGTTCGTTGAGGAAAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

105

Amino Acids

12.38

Weight (kDa)

7.91

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	3.4e-21	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 77	6.8e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 77	4.9e-17	Glutathione S-transferase, N-terminal domain
CLIC-like_N	PF22441	13 - 77	2.2e-06	CLIC-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	101, 215
AluBI	AGCT	3 cut(s)	19, 73, 281
AluI	AGCT	3 cut(s)	19, 73, 281
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	159
BspDI	ATCGAT	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	222
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	8 cut(s)	19, 39, 65, 73, 240, 275, 281, 293
CviKI_1	RGCY	8 cut(s)	19, 39, 65, 73, 240, 275, 281, 293
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	106
FaeI	CATG	1 cut(s)	234
FaiI	YATR	2 cut(s)	232, 316
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	1 cut(s)	230
FspBI	CTAG	1 cut(s)	294
Hin1II	CATG	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	51, 69
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	3 cut(s)	122, 159, 177
MaeI	CTAG	1 cut(s)	294
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	113, 169
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	3 cut(s)	97, 255, 298
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	234
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	21, 75, 82, 111, 283, 299
SgeI	CNNG	9 cut(s)	121, 130, 158, 166, 176, 224, 243, 294, 306
SinI	GGWCC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	294
TaqI	TCGA	2 cut(s)	84, 222
VpaK11BI	GGWCC	1 cut(s)	106
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.