Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

17233729 .. 17241806

Gene Structure 8078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTTTTTGCCCAGTGCAAGCCGGGAATAATCAAAGCTTTCTTTGAGAAGGAGGACCGTGAGAAGGTGGTGGACGAAGCGCGTGAGCTTCTAAAACTACTTGAAAATGAGCTCAAGGACAAGAATGCTGCTAACTTGATAGGCCACTGGCTTAAACCAGCTCAAGAAGCTTTGGAGTTGGATCTGCTGAACAAAGAGAAATGTCCGAAACTCTGGGATTGGTGTGATGAGTTTGTCAATCACAGTGTCGTTGAGGAAACTCTGCCTCCAACAGATAACCTAATTGGTCTCATCCTTGTCGCGCAAGTTCGACAACAAAGATGTTCATTGAACCGTGTCTTGTGGTCAATTGGGATGGCTATGATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

124

Amino Acids

14.26

Weight (kDa)

5.13

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	82, 302
AclWI	GGATC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	104, 331, 368
AluBI	AGCT	5 cut(s)	38, 88, 112, 161, 170
AluI	AGCT	5 cut(s)	38, 88, 112, 161, 170
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	82, 304
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	7
BmuI	ACTGGG	1 cut(s)	7
BpuEI	CTTGAG	2 cut(s)	98, 147
BpuMI	CCSGG	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	13, 152
BseGI	GGATG	2 cut(s)	291, 360
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseNI	ACTGG	2 cut(s)	13, 152
BseXI	GCAGC	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	82, 302
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	144
BspFNI	CGCG	2 cut(s)	82, 302
BspPI	GGATC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	13, 152
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	3 cut(s)	59, 245, 335
BstC8I	GCNNGC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	291, 360
BstFNI	CGCG	2 cut(s)	82, 302
BstHHI	GCGC	2 cut(s)	82, 304
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	82, 302
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	291, 360
BtsIMutI	CAGTG	3 cut(s)	20, 145, 250
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	2 cut(s)	82, 304
Cfr13I	GGNCC	1 cut(s)	55
CviJI	RGCY	9 cut(s)	22, 38, 88, 112, 144, 151, 161, 170, 359
CviKI_1	RGCY	9 cut(s)	22, 38, 88, 112, 144, 151, 161, 170, 359
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	114
FaiI	YATR	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	2 cut(s)	278, 367
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	129
GlaI	GCGC	2 cut(s)	81, 303
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	82, 304
Hin6I	GCGC	2 cut(s)	80, 302
HinP1I	GCGC	2 cut(s)	80, 302
HindIII	AAGCTT	2 cut(s)	36, 168
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	43, 58
HpyCH4III	ACNGT	3 cut(s)	59, 245, 335
HpyCH4V	TGCA	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HspAI	GCGC	2 cut(s)	80, 302
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	26, 36, 133, 171, 199
Lsp1109I	GCAGC	1 cut(s)	115
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	282, 348
MmeI	TCCRAC	2 cut(s)	159, 293
MnlI	CCTC	3 cut(s)	46, 247, 276
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	130
MvnI	CGCG	2 cut(s)	82, 302
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	181
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	40, 69, 90, 114, 163, 172, 282
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	113, 162
SmoI	CTYRAG	2 cut(s)	113, 162
Sse9I	AATT	2 cut(s)	282, 348
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	3 cut(s)	59, 245, 335
TaqI	TCGA	1 cut(s)	310
TasI	AATT	2 cut(s)	282, 348
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	3 cut(s)	20, 152, 250
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	3 cut(s)	20, 152, 250
VpaK11BI	GGWCC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.