Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002031.1

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

64553 .. 66394

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002031.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgactatgcacctcctgccgacgcatccccgccgcagtctccggcagcaaatacttccaacccatcaccactgggctcagcctttgcccaccaccaaggcagtcgacaagaaccaaggccgatatgctgctcaacggtcacccaaaacctcaaatccggcaataggatcacattggagaacagctccatatgcattgcccaaacctgagatcaagcccaaaggcccaggcaaaggcaaaactagcaagaggacgatgactatgcacctcctgccgacgcatccccgccgcagtctccggcagcaaatacttccaacccatcaccactgggctcagcctttgcccaccaccaaggcagtcgacaagaaccaaggccgatatgctgctcaacgcagtatggctgaggaagaagcagtgaagctgtttggcacttggagaagcccttttagccgcagagtggaaatagctctgaagctcaaaggtgtcgacttcaaatactatgaagaggatctgaccaacaagagccatctgcttctcaaatacaacccagttcacaagaagattcctgtgctcgtccacaacgaaaaaccgattgtagagtcccttgtcattcttgaatacattgacgagacctggaaagaaggcaggggcggaaccaggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

221

Amino Acids

25.49

Weight (kDa)

10.37

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	105, 360, 486
AciI	CCGC	6 cut(s)	31, 34, 286, 289, 451, 651
AclWI	GGATC	2 cut(s)	175, 516
AcuI	CTGAAG	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	164, 233, 457
AgsI	TTSAA	2 cut(s)	493, 617
AjnI	CCWGG	3 cut(s)	226, 632, 656
AluBI	AGCT	4 cut(s)	185, 421, 467, 475
AluI	AGCT	4 cut(s)	185, 421, 467, 475
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	3 cut(s)	44, 299, 623
AlwI	GGATC	2 cut(s)	175, 516
AoxI	GGCC	3 cut(s)	118, 223, 373
ApeKI	GCWGC	4 cut(s)	46, 128, 301, 383
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	59, 132, 314
BanII	GRGCYC	2 cut(s)	79, 334
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	58, 115, 313, 370
BccI	CCATC	3 cut(s)	72, 327, 534
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	3 cut(s)	228, 634, 658
BcoDI	GTCTC	3 cut(s)	44, 299, 623
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	7 cut(s)	34, 47, 129, 289, 302, 384, 451
BlpI	GCTNAGC	2 cut(s)	78, 333
BlsI	GCNGC	7 cut(s)	35, 48, 130, 290, 303, 385, 452
Bme1390I	CCNGG	3 cut(s)	228, 634, 658
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	3 cut(s)	228, 634, 658
BmrI	ACTGGG	3 cut(s)	82, 337, 542
BmsI	GCATC	2 cut(s)	34, 289
BmuI	ACTGGG	3 cut(s)	82, 337, 542
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu1102I	GCTNAGC	2 cut(s)	78, 333
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	5 cut(s)	96, 115, 226, 351, 370
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 233, 457
Bse1I	ACTGG	3 cut(s)	77, 332, 548
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	3 cut(s)	228, 634, 658
BseDI	CCNNGG	5 cut(s)	96, 115, 226, 351, 370
BseGI	GGATG	2 cut(s)	25, 280
BseLI	CCNNNNNNNGG	3 cut(s)	164, 233, 457
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	4 cut(s)	92, 198, 347, 393
BseNI	ACTGG	3 cut(s)	77, 332, 548
BseXI	GCAGC	4 cut(s)	58, 115, 313, 370
BshFI	GGCC	3 cut(s)	120, 225, 375
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	43, 158, 298
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	164, 233, 457
BsmAI	GTCTC	3 cut(s)	44, 299, 623
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	120, 225, 375
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	3 cut(s)	79, 334, 573
Bsp143I	GATC	3 cut(s)	167, 210, 508
Bsp1720I	GCTNAGC	2 cut(s)	78, 333
BspACI	CCGC	6 cut(s)	31, 34, 286, 289, 451, 651
BspANI	GGCC	3 cut(s)	120, 225, 375
BspCNI	CTCAG	4 cut(s)	91, 199, 346, 394
BspLI	GGNNCC	1 cut(s)	655
BspPI	GGATC	2 cut(s)	175, 516
BspTNI	GGTCTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	77, 332, 548
BssECI	CCNNGG	5 cut(s)	96, 115, 226, 351, 370
BssMI	GATC	3 cut(s)	167, 210, 508
BssT1I	CCWWGG	4 cut(s)	96, 115, 351, 370
Bst2UI	CCWGG	3 cut(s)	228, 634, 658
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	498
BstAPI	GCANNNNNTGC	2 cut(s)	16, 271
BstDEI	CTNAG	4 cut(s)	78, 207, 333, 402
BstEII	GGTNACC	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	25, 280
BstKTI	GATC	3 cut(s)	170, 213, 511
BstMAI	GTCTC	3 cut(s)	44, 299, 623
BstMBI	GATC	3 cut(s)	167, 210, 508
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 191, 243, 271, 447
BstNI	CCWGG	3 cut(s)	228, 634, 658
BstPI	GGTNACC	1 cut(s)	138
BstSCI	CCNGG	3 cut(s)	226, 632, 656
BstV1I	GCAGC	4 cut(s)	58, 115, 313, 370
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	3 cut(s)	120, 225, 375
BtsCI	GGATG	2 cut(s)	25, 280
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	70, 325, 420
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	2 cut(s)	31, 286
DdeI	CTNAG	4 cut(s)	78, 207, 333, 402
DpnI	GATC	3 cut(s)	169, 212, 510
DpnII	GATC	3 cut(s)	167, 210, 508
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	666
Eco130I	CCWWGG	4 cut(s)	96, 115, 351, 370
Eco24I	GRGCYC	2 cut(s)	79, 334
Eco31I	GGTCTC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	491
Eco91I	GGTNACC	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	226, 632, 656
EcoT14I	CCWWGG	4 cut(s)	96, 115, 351, 370
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	79, 334
ErhI	CCWWGG	4 cut(s)	96, 115, 351, 370
FaiI	YATR	8 cut(s)	8, 126, 190, 192, 263, 381, 398, 501
FaqI	GGGAC	1 cut(s)	586
FauI	CCCGC	2 cut(s)	38, 293
FauNDI	CATATG	1 cut(s)	190
FblI	GTMKAC	3 cut(s)	105, 360, 486
Fnu4HI	GCNGC	7 cut(s)	34, 47, 129, 289, 302, 384, 451
FokI	GGATG	2 cut(s)	12, 267
FriOI	GRGCYC	2 cut(s)	79, 334
Fsp4HI	GCNGC	7 cut(s)	34, 47, 129, 289, 302, 384, 451
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	7 cut(s)	34, 47, 129, 289, 302, 384, 451
HaeIII	GGCC	3 cut(s)	120, 225, 375
HapII	CCGG	3 cut(s)	43, 158, 298
HgaI	GACGC	2 cut(s)	31, 286
HincII	GTYRAC	3 cut(s)	106, 361, 487
HindII	GTYRAC	3 cut(s)	106, 361, 487
HinfI	GANTC	2 cut(s)	562, 599
HpaII	CCGG	3 cut(s)	43, 158, 298
HphI	GGTGA	3 cut(s)	59, 132, 314
Hpy166II	GTNNAC	5 cut(s)	106, 361, 487, 553, 577
Hpy188I	TCNGA	2 cut(s)	471, 513
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	5 cut(s)	106, 361, 487, 553, 577
Hpy99I	CGWCG	2 cut(s)	25, 280
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	10, 194, 265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 191, 243, 271, 447
HpyF3I	CTNAG	4 cut(s)	78, 207, 333, 402
Kzo9I	GATC	3 cut(s)	167, 210, 508
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	4 cut(s)	58, 115, 313, 370
LweI	GCATC	2 cut(s)	34, 289
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	3 cut(s)	169, 212, 510
MboI	GATC	3 cut(s)	167, 210, 508
MboII	GAAGA	3 cut(s)	419, 515, 571
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	79, 334, 573
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	83, 338
MnlI	CCTC	6 cut(s)	23, 160, 243, 278, 397, 499
Mph1103I	ATGCAT	1 cut(s)	196
MspI	CCGG	3 cut(s)	43, 158, 298
MspR9I	CCNGG	3 cut(s)	228, 634, 658
MvaI	CCWGG	3 cut(s)	228, 634, 658
MwoI	GCNNNNNNNGC	5 cut(s)	16, 191, 243, 271, 447
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	3 cut(s)	167, 210, 508
NlaIV	GGNNCC	1 cut(s)	655
NmuCI	GTSAC	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	7 cut(s)	35, 48, 130, 290, 303, 385, 452
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp6I	CCWGG	3 cut(s)	226, 632, 656
PspEI	GGTNACC	1 cut(s)	138
PspGI	CCWGG	3 cut(s)	226, 632, 656
PspN4I	GGNNCC	1 cut(s)	655
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	508
SalI	GTCGAC	3 cut(s)	104, 359, 485
SatI	GCNGC	7 cut(s)	34, 47, 129, 289, 302, 384, 451
Sau3AI	GATC	3 cut(s)	167, 210, 508
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	228, 634, 658
SduI	GDGCHC	3 cut(s)	79, 334, 573
SfaNI	GCATC	2 cut(s)	34, 289
SsiI	CCGC	6 cut(s)	31, 34, 286, 289, 451, 651
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	226, 632, 656
StyI	CCWWGG	4 cut(s)	96, 115, 351, 370
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	105, 360, 486
TauI	GCSGC	3 cut(s)	36, 291, 453
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	3 cut(s)	77, 332, 420
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	4 cut(s)	46, 128, 301, 383
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	77, 332, 420
XmiI	GTMKAC	3 cut(s)	105, 360, 486
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.