Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

23574767 .. 23575195

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1155200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTGATTCTTACTAGAATGTTTTGCAAGCCGGGAATAATCAAAGCTTTCTTTGAGAAGGAGGACCGTGAGAAGGCGGTGGACGAAGCGCGTGGGCTTCTAAAACTACTTGAAAATGAGCTCAAGGACAACAAGTTCTTTGGGGGAGAGACTATTGGATTCGTAGACATTGCTGCTAACTTGATAGGCCACTGGCTTAAACCAGCTCAAGAAGCTTTGGAGTTGGGTCTGCTGAGCAAAGAGAAATCTCCTAAGCTCTGGGATTGGTATGATGAGTTTGTCAGTTTTGTTAAGGAAACTCTGCCTCCTACAGATAACCTAATTGGCCTCATCCTTAGTCGCGCAAGTTCGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

119

Amino Acids

13.4

Weight (kDa)

5.23

Isoelectric Point (pI)

25.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	15 - 94	1e-10	Glutathione S-transferase, C-terminal domain
DUF7962	PF25907	21 - 99	6.5e-07	Domain of unknown function (DUF7962)
GST_C_2	PF13410	23 - 91	3.5e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	2 cut(s)	91, 342
AciI	CCGC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	5 cut(s)	47, 121, 206, 215, 256
AluI	AGCT	5 cut(s)	47, 121, 206, 215, 256
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	143
AoxI	GGCC	2 cut(s)	187, 325
ApeKI	GCWGC	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	91, 344
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	107, 192
BpuMI	CCSGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	91, 342
BshFI	GGCC	2 cut(s)	189, 327
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	189, 327
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	189, 327
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	91, 342
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	233, 252, 335
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	2 cut(s)	91, 342
BstHHI	GCGC	2 cut(s)	91, 344
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	91, 342
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	189, 327
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	2 cut(s)	91, 344
Cfr13I	GGNCC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	233, 252, 335
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	123
FaiI	YATR	2 cut(s)	270, 355
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	2 cut(s)	90, 343
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	189, 327
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	2 cut(s)	91, 344
Hin6I	GCGC	2 cut(s)	89, 342
HinP1I	GCGC	2 cut(s)	89, 342
HindIII	AAGCTT	2 cut(s)	45, 213
HinfI	GANTC	2 cut(s)	7, 159
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	82, 166
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	82, 166
HpyAV	CCTTC	2 cut(s)	52, 67
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	233, 252, 335
HspAI	GCGC	2 cut(s)	89, 342
LpnPI	CCDG	4 cut(s)	45, 178, 216, 244
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	321
MnlI	CCTC	3 cut(s)	55, 315, 338
MseI	TTAA	2 cut(s)	198, 291
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
MvnI	CGCG	2 cut(s)	91, 342
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	7, 159
PkrI	GCNGC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	64
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	198, 291
SatI	GCNGC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	49, 123, 208, 217, 258, 321
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	122, 207
SmoI	CTYRAG	2 cut(s)	122, 207
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	350
TasI	AATT	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	7, 159
Tru1I	TTAA	2 cut(s)	198, 291
Tru9I	TTAA	2 cut(s)	198, 291
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	1 cut(s)	173
TspRI	CASTG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.