Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

11642928 .. 11644163

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTGAGGAAGAAGCAGTGAAGCTGTTTGGCACTTGGAGAAGCCCTTTTAGCCGCAGAGTGGAAATAGCTCTGAAGCTCAAAGGTGTCGACTTCAAATACTATGAAGAGGATCTGACCAACAAGAGCCATCTGCTTCTCAAATACAACCCAGTTCACAAGAAGATTCCTGTGCTCGTCCACAACGAAAAACCTATTGTAGAGTCCCTTGTCATTCTTGAATACATTGACGAGACCTGGAAAGAAGGATTCCCCATATTGCCTAAAGACCCTTGTCAAAGATCACATGCACGCTTCTGGGCTAGGTTCCTTGATGAAAAGTGCCTGCCTGCGATAGAGGAAGCTTGCTTGAGGAGTGTAGACCGTGAGAAGGCTGTGGAAGAAGCATGCGAGCTTCTAAAACTACTCGAAAATGAGCTCAAAGACAACAAGTTCTTTGGGGGAGAGACTATTGGACTGGTGGATATTGTCGCTAGTGTCATAAGCTGCTGGCTCAAAGCTTTTCAACAAGTTGCGGGAGTAGAGCTGTTAACCAAAGAGAAACTTCCCAAGCTTTGTGAATGGAGTGATGAGTTTGTCAGCCATGCTGTTATTAAGGGATGTCTACCTCCAAGTGATAAGCTACTTGCTTCACTCCGTGCTCACTTTGAAACTGTTGCATCCAAGGAACTTTGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

226

Amino Acids

25.87

Weight (kDa)

5.78

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	2.3e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	1.9e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 79	2.2e-15	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	121 - 194	1.9e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	90, 360, 604
AciI	CCGC	2 cut(s)	55, 515
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	2 cut(s)	61, 370
AgsI	TTSAA	4 cut(s)	97, 221, 506, 650
AjnI	CCWGG	1 cut(s)	236
Alw21I	GWGCWC	3 cut(s)	177, 420, 643
Alw26I	GTCTC	2 cut(s)	227, 440
AlwI	GGATC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	177, 420, 643
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	227, 440
BfaI	CTAG	2 cut(s)	303, 474
BisI	GCNGC	2 cut(s)	55, 487
BlsI	GCNGC	2 cut(s)	56, 488
Bme1390I	CCNGG	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	146
BoxI	GACNNNNGTC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 370
Bse1I	ACTGG	2 cut(s)	152, 462
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	2 cut(s)	605, 659
BseLI	CCNNNNNNNGG	2 cut(s)	61, 370
BseNI	ACTGG	2 cut(s)	152, 462
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	473
BsiHKAI	GWGCWC	3 cut(s)	177, 420, 643
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	61, 370
BsmAI	GTCTC	2 cut(s)	227, 440
BsmFI	GGGAC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	3 cut(s)	177, 420, 643
Bsp143I	GATC	2 cut(s)	112, 281
BspACI	CCGC	2 cut(s)	55, 515
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	152, 462
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	2 cut(s)	112, 281
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	365, 655
Bst6I	CTCTTC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	678
BstC8I	GCNNGC	7 cut(s)	292, 326, 330, 346, 388, 392, 491
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	605, 659
BstKTI	GATC	2 cut(s)	115, 284
BstMAI	GTCTC	2 cut(s)	227, 440
BstMBI	GATC	2 cut(s)	112, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	2 cut(s)	290, 390
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	605, 659
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	7 cut(s)	292, 326, 330, 346, 388, 392, 491
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	3 cut(s)	287, 387, 584
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	114, 283
DpnII	GATC	2 cut(s)	112, 281
DraIII	CACNNNGTG	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	3 cut(s)	290, 390, 587
FaiI	YATR	6 cut(s)	105, 257, 288, 388, 482, 585
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	3 cut(s)	286, 386, 583
FauI	CCCGC	1 cut(s)	508
FblI	GTMKAC	3 cut(s)	90, 360, 604
Fnu4HI	GCNGC	2 cut(s)	55, 487
FokI	GGATG	2 cut(s)	612, 646
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	55, 487
FspBI	CTAG	2 cut(s)	303, 474
GluI	GCNGC	2 cut(s)	55, 487
Hin1II	CATG	3 cut(s)	290, 390, 587
HincII	GTYRAC	2 cut(s)	91, 531
HindII	GTYRAC	2 cut(s)	91, 531
HindIII	AAGCTT	3 cut(s)	342, 498, 551
HinfI	GANTC	3 cut(s)	166, 203, 249
HpaI	GTTAAC	1 cut(s)	531
Hpy166II	GTNNAC	6 cut(s)	91, 157, 181, 361, 531, 605
Hpy188I	TCNGA	2 cut(s)	75, 117
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	6 cut(s)	91, 157, 181, 361, 531, 605
HpyAV	CCTTC	2 cut(s)	239, 364
HpyCH4III	ACNGT	2 cut(s)	365, 655
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	2 cut(s)	290, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	3 cut(s)	290, 390, 587
KspAI	GTTAAC	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	112, 281
LpnPI	CCDG	9 cut(s)	165, 183, 223, 250, 283, 338, 342, 443, 475
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	2 cut(s)	303, 474
MaeII	ACGT	1 cut(s)	677
MalI	GATC	2 cut(s)	114, 283
MboI	GATC	2 cut(s)	112, 281
MboII	GAAGA	4 cut(s)	23, 119, 175, 392
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	3 cut(s)	177, 420, 643
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	103, 331, 345, 618
MseI	TTAA	2 cut(s)	530, 594
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	112, 281
NlaIII	CATG	3 cut(s)	290, 390, 587
NlaIV	GGNNCC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	290, 390
PaeI	GCATGC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	166, 249
PkrI	GCNGC	2 cut(s)	56, 488
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	530, 594
SatI	GCNGC	2 cut(s)	55, 487
Sau3AI	GATC	2 cut(s)	112, 281
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	3 cut(s)	177, 420, 643
SfaNI	GCATC	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SphI	GCATGC	1 cut(s)	390
SsiI	CCGC	2 cut(s)	55, 515
SspMI	CTAG	2 cut(s)	303, 474
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	365, 655
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	2 cut(s)	90, 408
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	166, 249
Tru1I	TTAA	2 cut(s)	530, 594
Tru9I	TTAA	2 cut(s)	530, 594
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	486
TspDTI	ATGAA	2 cut(s)	120, 330
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	24
XceI	RCATGY	2 cut(s)	290, 390
XmiI	GTMKAC	3 cut(s)	90, 360, 604
XspI	CTAG	2 cut(s)	303, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.