Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

11450919 .. 11461670

Gene Structure 10752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTGTCTTCCTGCGCTAAAGAAAGCTCTCGCGAGTATGGCTGAGGAGCGTGACAATGCCGTGGAAGAAGCATGTGAGCTTCTACAACTACTTGAAAATGAGCTCAAGCATAAGAAGTACTTTGGAGGAGATTGTATTGGACTGGTGGACATTGTTGCCAACTTCATAAGCCATTGGCTTAAAGTTCTTCAAGAAGTTGTGGGAGTGGAGCTGTTAACCATAAAGAAATTTCCCAAGCTATGCGAATGGAGTGAGAACTTTGTCTGCCATCATGCTGTTAAGGAATGTCTGCCTCCTAAAGACAAGCTTCTCACTTGGTTCCATTCTCACTATGGAAGCGGTACTACTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

118

Amino Acids

13.38

Weight (kDa)

6.29

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7962	PF25907	11 - 87	4.8e-07	Domain of unknown function (DUF7962)
GST_C	PF00043	12 - 87	1.4e-12	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	2 cut(s)	119, 343
AgsI	TTSAA	2 cut(s)	95, 191
AluBI	AGCT	6 cut(s)	26, 79, 103, 211, 238, 307
AluI	AGCT	6 cut(s)	26, 79, 103, 211, 238, 307
Alw21I	GWGCWC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	44
BmcAI	AGTACT	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	59, 141
Bsh1236I	CGCG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	42, 351
BstDSI	CCRYGG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	75
BstUI	CGCG	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	60
BtuMI	TCGCGA	1 cut(s)	32
CfoI	GCGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	118, 342
CviAII	CATG	2 cut(s)	72, 272
CviJI	RGCY	9 cut(s)	26, 41, 79, 103, 171, 178, 211, 238, 307
CviKI_1	RGCY	9 cut(s)	26, 41, 79, 103, 171, 178, 211, 238, 307
CviQI	GTAC	2 cut(s)	118, 342
DdeI	CTNAG	2 cut(s)	42, 351
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	75, 275
FaiI	YATR	8 cut(s)	38, 73, 111, 167, 221, 241, 273, 333
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 291, 323
FatI	CATG	2 cut(s)	71, 271
FriOI	GRGCYC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	75, 275
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	305
HpaI	GTTAAC	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	148, 216
Hpy188III	TCNNGA	2 cut(s)	31, 191
Hpy8I	GTNNAC	2 cut(s)	148, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	42, 351
Hsp92II	CATG	2 cut(s)	75, 275
HspAI	GCGC	1 cut(s)	14
KspAI	GTTAAC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	46, 208
LpnPI	CCDG	2 cut(s)	24, 128
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	77, 179
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	227
MnlI	CCTC	3 cut(s)	37, 119, 303
MseI	TTAA	3 cut(s)	180, 215, 279
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	75, 275
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	50
NruI	TCGCGA	1 cut(s)	32
NspI	RCATGY	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	320
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	2 cut(s)	119, 343
RsaNI	GTAC	2 cut(s)	118, 342
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	180, 215, 279
ScaI	AGTACT	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	6 cut(s)	28, 81, 105, 213, 240, 309
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	105
TasI	AATT	1 cut(s)	227
TatI	WGTACW	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	180, 215, 279
Tru9I	TTAA	3 cut(s)	180, 215, 279
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	154
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.