Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

38185756 .. 38186593

Gene Structure 838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTGGGGAGGACGTGAAGCTGTATGGAACTTGGAGGAGCCCATATAGTCGCAGGGTTGAAATAGCTCTGAAACTCAAAGGTGTCCAACACAAGTACTATGAAGAAGACCTGACCAACAAGAGCCCTTCGCTCCTCAAGTACAACCCGGTTCACAAGAAGATCCCTGTGCTTGTTCATGGTGAGAAAGTAATTTCAGAGTCCCATGTCATTCTCGAGTACATCGACGAGACGTGGAAGGGCTATGACATACTGCCTAAAGATCCTTGTGAAAAGGCCAAGGCACGCTTCTGGGCTAGGTTCATCGATGAAAAGTGTCTTCCTGCGCTAAAGAAAGCACTCGCGAGTACGGCTGAGGAGCGTGACAAGGCCGTGGAAGAAGCATGTGAGCTTCTACAACTACTTGAAAATGAGCTCAAGCATAAGAAGTACTTTGGAGGAGATTGTATTGGACTGGTGGACATTGTTGCGAACTTCATAAGCCATTGGCTTAAAGTTCTTCAAGACGTTGTGGGAGTGGAGCTGTTAAACATAAAGAAATTTCCCAAGCTATGCGAATGGAGTGAGAACTTTGTCTGCCACCATGCTGTTAAGGAATGTCTGCCTCCTAAAGACAAGCTTCTCGTTTGGTTCCATTCTCACTATGGAAGCGCTACTACTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

223

Amino Acids

25.59

Weight (kDa)

8.07

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 77	4.3e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 78	6.9e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 78	1.2e-16	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	108 - 191	6.3e-12	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	344
AclWI	GGATC	2 cut(s)	157, 257
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	5 cut(s)	98, 143, 221, 349, 431
AfeI	AGCGCT	1 cut(s)	652
AgsI	TTSAA	3 cut(s)	62, 407, 503
AjiI	CACGTC	2 cut(s)	16, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	7 cut(s)	22, 68, 391, 415, 523, 550, 619
AluI	AGCT	7 cut(s)	22, 68, 391, 415, 523, 550, 619
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	157, 257
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	652
AoxI	GGCC	2 cut(s)	276, 369
ApoI	RAATTY	1 cut(s)	539
AspLEI	GCGC	2 cut(s)	328, 653
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	215
BanII	GRGCYC	3 cut(s)	44, 128, 417
BarI	GAAGNNNNNNTAC	1 cut(s)	640
BbsI	GAAGAC	2 cut(s)	114, 311
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	354
BceAI	ACGGC	2 cut(s)	356, 366
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	654
BmcAI	AGTACT	2 cut(s)	98, 431
Bme1390I	CCNGG	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	215
BmgBI	CACGTC	2 cut(s)	16, 234
BmiI	GGNNCC	2 cut(s)	41, 632
BmrFI	CCNGG	1 cut(s)	149
BpiI	GAAGAC	2 cut(s)	114, 311
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	122, 401
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	279, 372
Bse1I	ACTGG	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	279, 372
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	4 cut(s)	52, 125, 371, 453
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	278, 371
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	278, 371
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	44, 128, 417
Bsp143I	GATC	2 cut(s)	162, 262
Bsp68I	TCGCGA	1 cut(s)	344
BspANI	GGCC	2 cut(s)	278, 371
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	41, 632
BspPI	GGATC	2 cut(s)	157, 257
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	279, 372
BssMI	GATC	2 cut(s)	162, 262
BssT1I	CCWWGG	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	354, 663
BstDSI	CCRYGG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	328, 653
BstKTI	GATC	2 cut(s)	165, 265
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	162, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	344
BstV2I	GAAGAC	2 cut(s)	114, 311
BstX2I	RGATCY	2 cut(s)	162, 262
BstYI	RGATCY	2 cut(s)	162, 262
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	278, 371
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	372
BtrI	CACGTC	2 cut(s)	16, 234
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	2 cut(s)	328, 653
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	5 cut(s)	97, 142, 220, 348, 430
CviAII	CATG	4 cut(s)	179, 206, 384, 584
CviQI	GTAC	5 cut(s)	97, 142, 220, 348, 430
DdeI	CTNAG	2 cut(s)	354, 663
DpnI	GATC	2 cut(s)	164, 264
DpnII	GATC	2 cut(s)	162, 262
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	3 cut(s)	44, 128, 417
Eco47III	AGCGCT	1 cut(s)	652
Eco53kI	GAGCTC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	3 cut(s)	44, 128, 417
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	4 cut(s)	182, 209, 387, 587
FalI	AAGNNNNNCTT	6 cut(s)	272, 304, 416, 448, 603, 635
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	4 cut(s)	178, 205, 383, 583
FriOI	GRGCYC	3 cut(s)	44, 128, 417
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	327, 652
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	278, 371
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	2 cut(s)	328, 653
Hin1II	CATG	4 cut(s)	182, 209, 387, 587
Hin6I	GCGC	2 cut(s)	326, 651
HinP1I	GCGC	2 cut(s)	326, 651
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	154, 460
Hpy188I	TCNGA	2 cut(s)	72, 199
Hpy188III	TCNNGA	3 cut(s)	215, 343, 503
Hpy8I	GTNNAC	2 cut(s)	154, 460
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	138, 232
HpyCH4IV	ACGT	3 cut(s)	15, 233, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	354, 663
HpySE526I	ACGT	3 cut(s)	15, 233, 507
Hsp92II	CATG	4 cut(s)	182, 209, 387, 587
HspAI	GCGC	2 cut(s)	326, 651
Kzo9I	GATC	2 cut(s)	162, 262
LmnI	GCTCC	4 cut(s)	39, 138, 358, 520
LpnPI	CCDG	7 cut(s)	40, 125, 162, 180, 277, 336, 440
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	3 cut(s)	15, 233, 507
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	2 cut(s)	164, 264
MboI	GATC	2 cut(s)	162, 262
MboII	GAAGA	6 cut(s)	116, 119, 172, 311, 389, 491
MflI	RGATCY	2 cut(s)	162, 262
MhlI	GDGCHC	3 cut(s)	44, 128, 417
MluCI	AATT	2 cut(s)	192, 539
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	4, 30, 146, 349, 431, 615
MseI	TTAA	3 cut(s)	492, 527, 591
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	162, 262
NlaIII	CATG	4 cut(s)	182, 209, 387, 587
NlaIV	GGNNCC	2 cut(s)	41, 632
NmuCI	GTSAC	1 cut(s)	362
NruI	TCGCGA	1 cut(s)	344
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	41, 632
PsuI	RGATCY	2 cut(s)	162, 262
RruI	TCGCGA	1 cut(s)	344
RsaI	GTAC	5 cut(s)	98, 143, 221, 349, 431
RsaNI	GTAC	5 cut(s)	97, 142, 220, 348, 430
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	492, 527, 591
Sau3AI	GATC	2 cut(s)	162, 262
ScaI	AGTACT	2 cut(s)	98, 431
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	3 cut(s)	44, 128, 417
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	137, 215, 416
SmoI	CTYRAG	3 cut(s)	137, 215, 416
Sse9I	AATT	2 cut(s)	192, 539
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	3 cut(s)	18, 236, 510
TaqI	TCGA	3 cut(s)	216, 225, 306
TasI	AATT	2 cut(s)	192, 539
TatI	WGTACW	4 cut(s)	96, 141, 219, 429
Tru1I	TTAA	3 cut(s)	492, 527, 591
Tru9I	TTAA	3 cut(s)	492, 527, 591
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	117, 167, 292, 324, 466
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	2 cut(s)	98, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.