Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

38210213 .. 38211174

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTGAGGAAGTGAAGCTTTTTGGTGTTTGGGGAAGCCCTTTCAGTCGGAGAGTGGAAATGGCTCTGAAGCTGAAGGGTGTCGAATACGAATACTTTGAAGAGGACCTGCAAAACAAGAGCGATCTGCTTCTCAAATACAACCCAGTTCACAAGAAGATCCCTGTGCTCCTACACAAAGGAAAACCAATAGCAGAGTCTGCAGTTATTCTTGAATACATCGATGAGACATGGAAGGGCTTTCCCCTATTGCCTAAAGACCCTTATCAAAGAGCCACAGCTCGGTTTTGGGCTAGGTTCGTTGAGGAAAAGTGCATGCCTGCGCTATTCAACTGCACTGTCGCGGAGGATCCAGAAATCAAAGATCGTGTTAAAATTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

6.74

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	5.9e-21	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 77	1.2e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 77	8.2e-17	Glutathione S-transferase, N-terminal domain
CLIC-like_N	PF22441	13 - 77	3.7e-06	CLIC-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccII	CGCG	1 cut(s)	344
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	3 cut(s)	154, 344, 357
AcsI	RAATTY	1 cut(s)	375
AcuI	CTGAAG	2 cut(s)	89, 95
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	101, 215, 331
AluBI	AGCT	3 cut(s)	19, 73, 281
AluI	AGCT	3 cut(s)	19, 73, 281
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	154, 344, 357
AlwNI	CAGNNNCTG	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	124, 159, 349, 364
BspACI	CCGC	1 cut(s)	344
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	154, 344, 357
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	4 cut(s)	124, 159, 349, 364
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	317, 321
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	127, 162, 352, 367
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	124, 159, 349, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	159, 349
BstYI	RGATCY	2 cut(s)	159, 349
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	317, 321
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	222
CviAII	CATG	2 cut(s)	231, 316
CviJI	RGCY	8 cut(s)	19, 39, 65, 73, 240, 275, 281, 293
CviKI_1	RGCY	8 cut(s)	19, 39, 65, 73, 240, 275, 281, 293
DpnI	GATC	4 cut(s)	126, 161, 351, 366
DpnII	GATC	4 cut(s)	124, 159, 349, 364
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	89, 95
EcoO109I	RGGNCCY	1 cut(s)	106
FaeI	CATG	2 cut(s)	234, 319
FaiI	YATR	2 cut(s)	232, 317
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	2 cut(s)	230, 315
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	234, 319
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	51, 69
Hpy188III	TCNNGA	3 cut(s)	212, 353, 381
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	70, 229
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	112, 203, 315, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	234, 319
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	124, 159, 349, 364
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	5 cut(s)	122, 159, 177, 333, 366
MaeI	CTAG	1 cut(s)	294
MalI	GATC	4 cut(s)	126, 161, 351, 366
MboI	GATC	4 cut(s)	124, 159, 349, 364
MboII	GAAGA	2 cut(s)	113, 169
MflI	RGATCY	2 cut(s)	159, 349
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	3 cut(s)	97, 298, 340
MseI	TTAA	1 cut(s)	372
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	4 cut(s)	124, 159, 349, 364
NlaIII	CATG	2 cut(s)	234, 319
NlaIV	GGNNCC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	159, 349
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	124, 159, 349, 364
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	21, 75, 111, 283, 299
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	106
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	84, 222
TasI	AATT	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	343
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.