Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002031.1

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Forward (+)

66788 .. 67382

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002031.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtcacgcagttcctggatgcttcacaaggaaccacttccgagttgcctgcctgcgatagaggaagcttgcttgaggagtgtagaccgtgagaaggctgtggaagaagcatgcgagcttctaaaactactcgaaaatgagctcaaagacaacaagttctttgggggagagactattggactggtggatattgttgctagtgtcataagctgctggctcaaagcttttcaacaagttgcgggagtagagctgttaaccaaagagaaacttcccaagctttgtgaatggagtgatgagtttgtcagccatgctgttattaagggatgtctacctccaagtgataagctacttgcttcactccgtgctcactttgaaactgttgcatccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

130

Amino Acids

14.47

Weight (kDa)

5.42

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	84, 328
AciI	CCGC	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	230, 374
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	8 cut(s)	68, 118, 142, 210, 224, 250, 277, 346
AluI	AGCT	8 cut(s)	68, 118, 142, 210, 224, 250, 277, 346
Alw21I	GWGCWC	2 cut(s)	144, 367
Alw26I	GTCTC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	144, 367
BbvI	GCAGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	24, 329, 383
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	197
BsiHKAI	GWGCWC	2 cut(s)	144, 367
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	144, 367
BspACI	CCGC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	89, 379
BstC8I	GCNNGC	6 cut(s)	50, 54, 70, 112, 116, 215
BstF5I	GGATG	3 cut(s)	24, 329, 383
BstMAI	GTCTC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	24, 329, 383
Cac8I	GCNNGC	6 cut(s)	50, 54, 70, 112, 116, 215
CaiI	CAGNNNCTG	1 cut(s)	15
CviAII	CATG	2 cut(s)	111, 308
DraIII	CACNNNGTG	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	2 cut(s)	114, 311
FaiI	YATR	3 cut(s)	112, 206, 309
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	2 cut(s)	110, 307
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	84, 328
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	3 cut(s)	31, 336, 370
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	114, 311
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HindIII	AAGCTT	3 cut(s)	66, 222, 275
HpaI	GTTAAC	1 cut(s)	255
Hpy166II	GTNNAC	3 cut(s)	85, 255, 329
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	3 cut(s)	85, 255, 329
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	89, 379
HpyCH4V	TGCA	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	114, 311
KspAI	GTTAAC	1 cut(s)	255
LpnPI	CCDG	5 cut(s)	28, 62, 66, 167, 199
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	144, 367
MnlI	CCTC	3 cut(s)	55, 69, 342
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	254, 318
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
NlaIII	CATG	2 cut(s)	114, 311
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	114
PaeI	GCATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	254, 318
SatI	GCNGC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	144, 367
SetI	ASST	9 cut(s)	70, 120, 144, 212, 226, 252, 279, 334, 348
SfaNI	GCATC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SphI	GCATGC	1 cut(s)	114
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	89, 379
TaqI	TCGA	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	254, 318
Tru9I	TTAA	2 cut(s)	254, 318
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	1 cut(s)	350
XceI	RCATGY	1 cut(s)	114
XmiI	GTMKAC	2 cut(s)	84, 328
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.