Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

5790334 .. 5791899

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGACAGGGATGGAGGATCCAACGGCGGATCTTGCTACTACTCCGTCCTCGGGATCCGCAAGGATGCCTCCGTCTCTGATATCCGCACCGCTTACCGTAAACTCGCCATGAAATGGCATCCGGATAGGTGGGCCCGGAACCAGAACCCGTCGGTGGCCGGAGAAGCGAATCGGCGGTTTCAGCAAATCCAAGAAGCCTATTCGGTTCTCTCGGATCAGGGGAAGAGGTCAATGTACGACGCCGGGGTCTACGACCCGCTTGAAGAAGAAGACGAAGAATTTGGGGACTTCATGCAAGAGATGATTTCCATGATGAACAGTGTGAAGGACGAGGGGGACAGTTTTGAAGATCTCCAGAGGATGTTTGTGGAAATGGTTGGTGGAGATGGGAGCCACGGAATGGGGTTTGACATCGGCGGCATGGATTCAACGGCCGCAAAGAAGGCACGTGTCGGTTCGTCCAGAAGCAACTCTAACGCCGCCAATCGGGGCACGTCGCGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

168

Amino Acids

18.66

Weight (kDa)

4.98

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	13 - 80	2e-23	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB7I	CCANNNNNTGG	2 cut(s)	114, 400
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	499
AccIII	TCCGGA	1 cut(s)	121
AclWI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 222
AcoI	YGGCCR	2 cut(s)	156, 432
AcsI	RAATTY	1 cut(s)	278
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	5 cut(s)	51, 114, 154, 400, 486
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	263, 347, 429
AjiI	CACGTC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 222
Ama87I	CYCGRG	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	3 cut(s)	132, 156, 432
ApaI	GGGCCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	2 cut(s)	132, 133
AsuC2I	CCSGG	2 cut(s)	136, 244
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	2 cut(s)	136, 494
BamHI	GGATCC	2 cut(s)	17, 54
BanII	GRGCYC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	2 cut(s)	5, 380
BceAI	ACGGC	2 cut(s)	40, 447
BcnI	CCSGG	2 cut(s)	136, 244
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	3 cut(s)	418, 435, 480
BlsI	GCNGC	3 cut(s)	419, 436, 481
Bme1390I	CCNGG	2 cut(s)	136, 244
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	5 cut(s)	19, 56, 134, 140, 392
BmrFI	CCNGG	2 cut(s)	136, 244
BmsI	GCATC	2 cut(s)	55, 127
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	338
BpuMI	CCSGG	2 cut(s)	136, 244
BsaAI	YACGTR	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	49, 243, 394
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 114, 154, 400, 486
BseAI	TCCGGA	1 cut(s)	121
BseDI	CCNNGG	3 cut(s)	49, 243, 394
BseGI	GGATG	4 cut(s)	16, 70, 118, 366
BseLI	CCNNNNNNNGG	5 cut(s)	51, 114, 154, 400, 486
BseSI	GKGCMC	2 cut(s)	136, 494
BseX3I	CGGCCG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	499
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	134, 158, 434
BsiEI	CGRYCG	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	122, 136, 159, 243
BslFI	GGGAC	2 cut(s)	299, 350
BslI	CCNNNNNNNGG	5 cut(s)	51, 114, 154, 400, 486
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	299, 350
BsnI	GGCC	3 cut(s)	134, 158, 434
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	136, 494
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	17, 29, 54, 214, 349
BspANI	GGCC	3 cut(s)	134, 158, 434
BspEI	TCCGGA	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	5 cut(s)	19, 56, 134, 140, 392
BspPI	GGATC	6 cut(s)	12, 25, 37, 49, 62, 222
BssECI	CCNNGG	3 cut(s)	49, 243, 394
BssMI	GATC	5 cut(s)	17, 29, 54, 214, 349
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	98, 320, 341
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	449
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	4 cut(s)	16, 70, 118, 366
BstFNI	CGCG	1 cut(s)	499
BstKTI	GATC	5 cut(s)	20, 32, 57, 217, 352
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	5 cut(s)	17, 29, 54, 214, 349
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
BstSCI	CCNGG	2 cut(s)	134, 242
BstSLI	GKGCMC	2 cut(s)	136, 494
BstUI	CGCG	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	4 cut(s)	17, 29, 54, 349
BstYI	RGATCY	4 cut(s)	17, 29, 54, 349
BstZI	CGGCCG	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	134, 158, 434
BtgI	CCRYGG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	4 cut(s)	16, 70, 118, 366
BtsIMutI	CAGTG	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	132, 133
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	109, 292, 310, 421
CviJI	RGCY	5 cut(s)	134, 158, 197, 393, 434
CviKI_1	RGCY	5 cut(s)	134, 158, 197, 393, 434
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	5 cut(s)	19, 31, 56, 216, 351
DpnII	GATC	5 cut(s)	17, 29, 54, 214, 349
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	156, 432
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	4 cut(s)	112, 295, 313, 424
FaiI	YATR	4 cut(s)	110, 293, 311, 422
FaqI	GGGAC	2 cut(s)	299, 350
FatI	CATG	4 cut(s)	108, 291, 309, 420
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	418, 435, 480
FokI	GGATG	4 cut(s)	23, 77, 105, 373
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	418, 435, 480
FspBI	CTAG	1 cut(s)	505
GluI	GCNGC	3 cut(s)	418, 435, 480
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	134, 158, 434
HapII	CCGG	4 cut(s)	122, 136, 159, 243
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	112, 295, 313, 424
HinfI	GANTC	2 cut(s)	169, 425
HpaII	CCGG	4 cut(s)	122, 136, 159, 243
Hpy166II	GTNNAC	2 cut(s)	101, 250
Hpy188I	TCNGA	2 cut(s)	79, 214
Hpy188III	TCNNGA	4 cut(s)	52, 122, 355, 462
Hpy8I	GTNNAC	2 cut(s)	101, 250
Hpy99I	CGWCG	3 cut(s)	154, 242, 499
HpyAV	CCTTC	2 cut(s)	319, 436
HpyCH4III	ACNGT	3 cut(s)	98, 320, 341
HpyCH4IV	ACGT	2 cut(s)	448, 494
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
HpySE526I	ACGT	2 cut(s)	448, 494
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	112, 295, 313, 424
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	17, 29, 54, 214, 349
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	8 cut(s)	135, 149, 155, 172, 203, 256, 368, 475
LweI	GCATC	2 cut(s)	55, 127
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	2 cut(s)	448, 494
MalI	GATC	5 cut(s)	19, 31, 56, 216, 351
MboI	GATC	5 cut(s)	17, 29, 54, 214, 349
MboII	GAAGA	6 cut(s)	235, 275, 278, 281, 287, 359
MflI	RGATCY	4 cut(s)	17, 29, 54, 349
MhlI	GDGCHC	2 cut(s)	136, 494
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	8, 59, 79, 219, 325, 351
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	4 cut(s)	122, 136, 159, 243
MspR9I	CCNGG	2 cut(s)	136, 244
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	33, 164, 181, 443
NciI	CCSGG	2 cut(s)	136, 244
NdeII	GATC	5 cut(s)	17, 29, 54, 214, 349
NlaIII	CATG	4 cut(s)	112, 295, 313, 424
NlaIV	GGNNCC	5 cut(s)	19, 56, 134, 140, 392
PfeI	GAWTC	2 cut(s)	169, 425
PflMI	CCANNNNNTGG	2 cut(s)	114, 400
PkrI	GCNGC	3 cut(s)	419, 436, 481
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
PspCI	CACGTG	1 cut(s)	449
PspN4I	GGNNCC	5 cut(s)	19, 56, 134, 140, 392
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
PsuI	RGATCY	4 cut(s)	17, 29, 54, 349
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	3 cut(s)	418, 435, 480
Sau3AI	GATC	5 cut(s)	17, 29, 54, 214, 349
Sau96I	GGNCC	2 cut(s)	132, 133
ScrFI	CCNGG	2 cut(s)	136, 244
SduI	GDGCHC	2 cut(s)	136, 494
SetI	ASST	4 cut(s)	131, 230, 451, 497
SfaNI	GCATC	2 cut(s)	55, 127
Sse9I	AATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	134, 242
TaaI	ACNGT	3 cut(s)	98, 320, 341
TaiI	ACGT	2 cut(s)	451, 497
TasI	AATT	1 cut(s)	278
TauI	GCSGC	3 cut(s)	420, 437, 482
TfiI	GAWTC	2 cut(s)	169, 425
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	125, 280, 329
TspGWI	ACGGA	3 cut(s)	34, 61, 411
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	2 cut(s)	114, 400
XapI	RAATTY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.