Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

11633974 .. 11637895

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTCCCAGCAACTATGAGATTGCACGGTGCATGCCTGCGTTATTCAACTGCACTGTCGCGGAGGATCGTAAAAAGGCTGTGGAGGAAGCTCATGAGACTCTGAAACTACTTGAAAATGAGCTCAAGGATAAGAAGTTCTTTGGGGGAGAGGACATTGGATTTGTGGACATTATTGCTGACTTCATAGGAGGCTACTGGCTTAGAGATATTCAAGAGATTGTCGGATTGGAGCTCTTAACAAAAGAGAAATTTCCCAAGCTATGTGAATGGAGCGATGAGTTTGTCAACCACGCTGCTATTAAGGAATGTCTGCCTCCTAGAGACAAGCTAATTGCTTTCTTCCGCACCCGCTTTGGTGCAAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

123

Amino Acids

14.14

Weight (kDa)

5.26

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	21 - 98	4e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	62, 346, 352
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	49, 116, 215
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	5 cut(s)	92, 124, 235, 262, 331
AluI	AGCT	5 cut(s)	92, 124, 235, 262, 331
Alw21I	GWGCWC	2 cut(s)	126, 237
Alw26I	GTCTC	2 cut(s)	92, 318
AlwI	GGATC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
BanII	GRGCYC	2 cut(s)	126, 237
Bbv12I	GWGCWC	2 cut(s)	126, 237
BbvI	GCAGC	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	92, 318
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	126, 237
BsmAI	GTCTC	2 cut(s)	92, 318
Bsp1286I	GDGCHC	2 cut(s)	126, 237
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	3 cut(s)	62, 346, 352
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	30, 58
BstC8I	GCNNGC	2 cut(s)	35, 39
BstDEI	CTNAG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	2 cut(s)	92, 318
BstMBI	GATC	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	37
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	35, 39
CciI	TCATGA	1 cut(s)	94
CviAII	CATG	2 cut(s)	34, 95
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Ecl136II	GAGCTC	2 cut(s)	124, 235
Eco24I	GRGCYC	2 cut(s)	126, 237
Eco53kI	GAGCTC	2 cut(s)	124, 235
EcoICRI	GAGCTC	2 cut(s)	124, 235
EcoT38I	GRGCYC	2 cut(s)	126, 237
FaeI	CATG	2 cut(s)	37, 98
FaiI	YATR	6 cut(s)	18, 35, 96, 188, 265, 370
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	2 cut(s)	33, 94
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	297
FriOI	GRGCYC	2 cut(s)	126, 237
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	1 cut(s)	297
GsaI	CCCAGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	37, 98
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	169, 289
Hpy188I	TCNGA	2 cut(s)	105, 227
Hpy188III	TCNNGA	2 cut(s)	95, 215
Hpy8I	GTNNAC	2 cut(s)	169, 289
HpyCH4III	ACNGT	2 cut(s)	30, 58
HpyCH4V	TGCA	4 cut(s)	26, 33, 54, 362
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	37, 98
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	3 cut(s)	10, 232, 273
LpnPI	CCDG	3 cut(s)	22, 51, 184
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	321
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	126, 237
MluCI	AATT	2 cut(s)	251, 333
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	58, 79, 145, 185, 327
MseI	TTAA	2 cut(s)	239, 303
MvnI	CGCG	1 cut(s)	62
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	37, 98
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	37
PaeI	GCATGC	1 cut(s)	37
PagI	TCATGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp124BI	GAGCTC	2 cut(s)	126, 237
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	6
SacI	GAGCTC	2 cut(s)	126, 237
SaqAI	TTAA	2 cut(s)	239, 303
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	126, 237
SetI	ASST	5 cut(s)	94, 126, 237, 264, 333
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SphI	GCATGC	1 cut(s)	37
Sse9I	AATT	2 cut(s)	251, 333
SsiI	CCGC	3 cut(s)	62, 346, 352
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	2 cut(s)	126, 237
TaaI	ACNGT	2 cut(s)	30, 58
TasI	AATT	2 cut(s)	251, 333
Tru1I	TTAA	2 cut(s)	239, 303
Tru9I	TTAA	2 cut(s)	239, 303
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.