Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

11299480 .. 11302004

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG137900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGATCATGAATGCCTGCCTGCGATAGAGGAAGCTTGCTTGAGGAGTGTAGACCGTGAGAAGGCTGTGGAAGAAGCATGCGAGCTTCTAAAACTACTCGAAAATGAGCTCAAAGACAACAAGTTCTTTGGGGGAGAGACTATTGGACTGGTGGATATTGTCGCTAGTGTCATAAGCTGCTGGCTCAAAGCTTTTCAACAAGTTGCGGGAGTAGAGCTGTTAACCAAAGAGAAACTTCCCAAGCTTTGTGAATGGAGTGATGAGTTTGTCAGCCATGCTGTTATTAAGGGATGTCTACCTCCAAGTGATAAGCTACTTGCTTCACTCCGTGCTCACTTTGAAACTGTTGCATCCAAGGAACTTTGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

123

Amino Acids

13.66

Weight (kDa)

4.87

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	19 - 91	5.1e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 295
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	197, 341
AluBI	AGCT	8 cut(s)	35, 85, 109, 177, 191, 217, 244, 313
AluI	AGCT	8 cut(s)	35, 85, 109, 177, 191, 217, 244, 313
Alw21I	GWGCWC	2 cut(s)	111, 334
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 334
BbvI	GCAGC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmsI	GCATC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	296, 350
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	111, 334
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	111, 334
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	7
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	56, 346
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	6 cut(s)	17, 21, 37, 79, 83, 182
BstF5I	GGATG	2 cut(s)	296, 350
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	4
BstNSI	RCATGY	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	296, 350
Cac8I	GCNNGC	6 cut(s)	17, 21, 37, 79, 83, 182
CciI	TCATGA	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	3 cut(s)	8, 78, 275
CviQI	GTAC	1 cut(s)	366
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraIII	CACNNNGTG	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	3 cut(s)	11, 81, 278
FaiI	YATR	4 cut(s)	9, 79, 173, 276
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	3 cut(s)	7, 77, 274
FauI	CCCGC	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	51, 295
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	2 cut(s)	303, 337
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	11, 81, 278
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	3 cut(s)	33, 189, 242
HpaI	GTTAAC	1 cut(s)	222
Hpy166II	GTNNAC	3 cut(s)	52, 222, 296
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	3 cut(s)	52, 222, 296
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	56, 346
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	11, 81, 278
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	29, 33, 134, 166
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	368
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	111, 334
MnlI	CCTC	3 cut(s)	22, 36, 309
MseI	TTAA	2 cut(s)	221, 285
Mva1269I	GAATGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	11, 81, 278
NspI	RCATGY	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	81
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	221, 285
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	4
SduI	GDGCHC	2 cut(s)	111, 334
SfaNI	GCATC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	81
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	56, 346
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	221, 285
Tru9I	TTAA	2 cut(s)	221, 285
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	81
XmiI	GTMKAC	2 cut(s)	51, 295
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.