Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002879

Physical Location & Seq

Genomic Coordinates Reverse (-)

11630667 .. 11631608

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTGAGGAAGTGAAGCTTTTTGGTGTTTGGGGAAGCCCTTTCAGTCGGAGGGTGGAAATGGCTCTGAAGCTGAAAGGTGTCGAATACGAATACTTTGAAGAGGACCTGCAAAACAAGAGCGATCTGCTTCTCAAATACAACCCAGTTCACAAGAAGATCCCTGTGCTCCTACACAAAGGAAAACCAATAGCAGAGTCTGCTGTTATTCTTGAATACATCGATGAGACATGGAAGGGCTTTCCTCTATTGCCTAAAGACCCTTATCAAAGAGCCACAGCTCGGTTTTGGGCTAGGTTCGTTGAGGAAAAGTGCATGCCTGCGTTATTCAACTGCACTGTCGCGGAGGATCGTAAAAAGGCTGTGGAGGAAGCTCATGAGACTCTGAAACTACTTGAAAATGAGCTCAAGGATAAGAAGTTCTTTGGGGGAGAGGACATTGGATTTGTGGACATTATTGCTGACTTCATAGGAGGCTACTGGCTTAGAGATATTCAAGAGATTGTCGGATTGGAGCTCTTAACAAAAGAGAAATTTCCCAAGCTATGTGAATGGAGCGATGAGTTTGTCAACCACGCTGCTATTAAGGAATGTCTGCCTCCTAGAGACAAGCTAATTGCTTTCTTCCGCACCCGCTTTGGTGCAAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

217

Amino Acids

25.22

Weight (kDa)

5.93

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 76	2.1e-20	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 77	4.2e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 77	2.7e-16	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	115 - 192	1.4e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09270
fragaria_vesca	FvH4_6g12680 FvH4_6g12690
malus_domestica	MD04G1139400.v1.1 MD04G1139500.v1.1 MD04G1139600.v1.1 MD12G1155200.v1.1
prunus_persica	Prupe.6G264900_v2.0.a1 Prupe.6G265000_v2.0.a1
pyrus_communis	pycom12g14730
rosa_chinensis	RchiOBHm_Chr3g0464521 RchiOBHm_Chr3g0464531 RchiOBHm_Chr3g0464541
rosa_laevigata	RLG00000024684 RLG00000024685 RLG00000024688
rosa_multiflora	Rmu_sc0002031.1_g000017 Rmu_sc0002031.1_g000018 Rmu_sc0002031.1_g000021 Rmu_sc0032314.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321260 Rroxscaffold_6G00415560 Rroxscaffold_6G00415580 Rroxscaffold_6G00415590
rosa_rugosa	Rorug03G0008900 Rorug03G0008900 Rorug03G0072900 Rorug03G0073000 Rorug03G0073000
rosa_samantha	Rh3BG135200 Rh3CG137800 Rh3CG137900 Rh3DG136500 Rh3DG136700 Rh3DG136800
rosa_wichuraiana	Rw3G011050 Rw3G011060 Rw3G011070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
AccII	CGCG	1 cut(s)	344
AciI	CCGC	3 cut(s)	344, 628, 634
AclWI	GGATC	2 cut(s)	154, 357
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	5 cut(s)	101, 215, 331, 398, 497
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	8 cut(s)	19, 73, 281, 374, 406, 517, 544, 613
AluI	AGCT	8 cut(s)	19, 73, 281, 374, 406, 517, 544, 613
Alw21I	GWGCWC	3 cut(s)	171, 408, 519
Alw26I	GTCTC	3 cut(s)	221, 374, 600
AlwI	GGATC	2 cut(s)	154, 357
AlwNI	CAGNNNCTG	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	408, 519
Bbv12I	GWGCWC	3 cut(s)	171, 408, 519
BbvI	GCAGC	1 cut(s)	565
BcoDI	GTCTC	3 cut(s)	221, 374, 600
BfaI	CTAG	2 cut(s)	294, 603
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	146, 485
BseCI	ATCGAT	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	146, 485
BseXI	GCAGC	1 cut(s)	565
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	3 cut(s)	171, 408, 519
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	3 cut(s)	221, 374, 600
Bsp1286I	GDGCHC	3 cut(s)	171, 408, 519
Bsp143I	GATC	3 cut(s)	124, 159, 349
BspACI	CCGC	3 cut(s)	344, 628, 634
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	154, 357
BsrI	ACTGG	2 cut(s)	146, 485
BssMI	GATC	3 cut(s)	124, 159, 349
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	317, 321
BstDEI	CTNAG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	3 cut(s)	127, 162, 352
BstMAI	GTCTC	3 cut(s)	221, 374, 600
BstMBI	GATC	3 cut(s)	124, 159, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	319
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	565
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	317, 321
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	222
CviAII	CATG	3 cut(s)	231, 316, 377
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	3 cut(s)	126, 161, 351
DpnII	GATC	3 cut(s)	124, 159, 349
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	406, 517
Eco24I	GRGCYC	2 cut(s)	408, 519
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	406, 517
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	2 cut(s)	406, 517
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	2 cut(s)	408, 519
FaeI	CATG	3 cut(s)	234, 319, 380
FaiI	YATR	6 cut(s)	232, 317, 378, 470, 547, 652
FalI	AAGNNNNNCTT	3 cut(s)	35, 407, 439
FatI	CATG	3 cut(s)	230, 315, 376
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	579
FriOI	GRGCYC	2 cut(s)	408, 519
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	294, 603
GluI	GCNGC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	234, 319, 380
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	197, 382
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	151, 451, 571
Hpy188I	TCNGA	4 cut(s)	51, 69, 387, 509
Hpy188III	TCNNGA	3 cut(s)	212, 377, 497
Hpy8I	GTNNAC	3 cut(s)	151, 451, 571
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	112, 315, 336, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	485
Hsp92II	CATG	3 cut(s)	234, 319, 380
Kzo9I	GATC	3 cut(s)	124, 159, 349
LmnI	GCTCC	3 cut(s)	174, 514, 555
LpnPI	CCDG	5 cut(s)	122, 159, 177, 333, 466
Lsp1109I	GCAGC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	294, 603
MalI	GATC	3 cut(s)	126, 161, 351
MboI	GATC	3 cut(s)	124, 159, 349
MboII	GAAGA	3 cut(s)	113, 169, 616
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	171, 408, 519
MluCI	AATT	2 cut(s)	533, 615
MlyI	GAGTC	2 cut(s)	206, 376
MmeI	TCCRAC	2 cut(s)	29, 487
MnlI	CCTC	9 cut(s)	45, 97, 255, 298, 340, 361, 427, 467, 609
MseI	TTAA	2 cut(s)	521, 585
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	3 cut(s)	124, 159, 349
NlaIII	CATG	3 cut(s)	234, 319, 380
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	2 cut(s)	205, 376
PpsI	GAGTC	2 cut(s)	205, 376
PpuMI	RGGWCCY	1 cut(s)	106
Psp124BI	GAGCTC	2 cut(s)	408, 519
Psp5II	RGGWCCY	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	159
SacI	GAGCTC	2 cut(s)	408, 519
SaqAI	TTAA	2 cut(s)	521, 585
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	3 cut(s)	124, 159, 349
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	206, 376
SduI	GDGCHC	3 cut(s)	171, 408, 519
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	2 cut(s)	533, 615
SsiI	CCGC	3 cut(s)	344, 628, 634
SspMI	CTAG	2 cut(s)	294, 603
SstI	GAGCTC	2 cut(s)	408, 519
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	84, 222
TasI	AATT	2 cut(s)	533, 615
Tru1I	TTAA	2 cut(s)	521, 585
Tru9I	TTAA	2 cut(s)	521, 585
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	2 cut(s)	294, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.