AT3G54200

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015399
Physical Location & Seq
Forward (+)
20065607 .. 20066617
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54200.1

Sequence Viewer

Length: 708 bp
ATGAGTGATTTTTCAATCAAACCCGATGATAAAAAGGAAGAGGAGAAGCCAGCAACAGCCATGTTACCACCACCCAAACCAAACGCTTCTTCCATGGAAACGCAATCTGCTAACACCGGAACCGCTAAAAAACTGCGGCGGAAACGCAACTGCAAAATCTGTATCTGTTTCACTATCCTTCTCATTCTCCTAATCGCCATAGTTATCGTCATCTTAGCTTTCACTCTCTTCAAACCAAAACGCCCAACTACTACAATCGATTCCGTCACCGTTGATCGTCTCCAAGCTTCCGTCAATCCTCTCCTTCTCAAAGTCCTCCTAAACCTAACGCTCAACGTCGATCTCTCTCTCAAAAACCCTAACCGCATCGGGTTTAGCTACGATTCGTCGTCGGCGTTGTTGAATTACAGAGGCCAAGTGATCGGTGAAGCTCCTCTTCCGGCTAACCGAATCGCGGCGCGGAAAACGGTGCCGTTGAATATAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAAACGCAGCTTTTATCTGACGTCATGGCTGGCGTCATTCCGCTTAATACTTTTGTTAAAGTCACTGGTAAAGTAACCGTTCTTAAAATCTTTAAGATTAAAGTCCAATCGTCTTCTTCGTGTGATCTCAGTATCTCTGTTTCGGATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

235

Amino Acids

25.78

Weight (kDa)

9.82

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 115 - 213 3.5e-14 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54200
fragaria_vesca FvH4_6g09270
malus_domestica MD04G1179500.v1.1 MD12G1194600.v1.1
prunus_persica Prupe.6G299500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459631
rosa_laevigata RLG00000025071
rosa_multiflora Rmu_sc0000240.1_g000017 Rmu_sc0023706.1_g000007
rosa_roxburghii Rroxscaffold_6G00420110
rosa_rugosa Rorug03G0036800.1
rosa_samantha Rh3BG098100 Rh3CG100100 Rh3DG099500
rosa_wichuraiana Rw0G013810 Rw0G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 706
AatII GACGTC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 469
AccII CGCG 2 cut(s) 455, 460
AciI CCGC 8 cut(s) 123, 136, 139, 364, 455, 460, 500, 557
AclI AACGTT 1 cut(s) 485
AclWI GGATC 2 cut(s) 510, 669
AcyI GRCGYC 2 cut(s) 537, 549
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 4 cut(s) 15, 232, 403, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 5 cut(s) 218, 287, 378, 431, 526
AluI AGCT 5 cut(s) 218, 287, 378, 431, 526
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 2 cut(s) 510, 669
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 523
AspLEI GCGC 1 cut(s) 460
AsuHPI GGTGA 2 cut(s) 259, 437
BanI GGYRCC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 535
BceAI ACGGC 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 284
BisI GCNGC 3 cut(s) 137, 456, 524
BlsI GCNGC 3 cut(s) 138, 457, 525
BmiI GGNNCC 2 cut(s) 121, 471
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 621
Bsa29I ATCGAT 1 cut(s) 258
BsaHI GRCGYC 2 cut(s) 537, 549
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 586
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 658
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 2 cut(s) 56, 423
BseXI GCAGC 1 cut(s) 535
Bsh1236I CGCG 2 cut(s) 455, 460
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 469
BshVI ATCGAT 1 cut(s) 258
BsiSI CCGG 2 cut(s) 117, 440
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 284
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 414
Bsp143I GATC 6 cut(s) 274, 340, 420, 502, 640, 661
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 8 cut(s) 123, 136, 139, 364, 455, 460, 500, 557
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 657
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 2 cut(s) 455, 460
BspLI GGNNCC 2 cut(s) 121, 471
BspPI GGATC 2 cut(s) 510, 669
BspT107I GGYRCC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 586
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 6 cut(s) 274, 340, 420, 502, 640, 661
BssNI GRCGYC 2 cut(s) 537, 549
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 271, 469, 595, 686
Bst6I CTCTTC 3 cut(s) 33, 233, 441
BstACI GRCGYC 2 cut(s) 537, 549
BstC8I GCNNGC 2 cut(s) 51, 547
BstDEI CTNAG 3 cut(s) 214, 644, 699
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 2 cut(s) 455, 460
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 6 cut(s) 277, 343, 423, 505, 643, 664
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 6 cut(s) 274, 340, 420, 502, 640, 661
BstUI CGCG 2 cut(s) 455, 460
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 579, 682
Cac8I GCNNGC 2 cut(s) 51, 547
CfoI GCGC 1 cut(s) 460
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 2 cut(s) 499, 538
CviAII CATG 3 cut(s) 61, 94, 541
DdeI CTNAG 3 cut(s) 214, 644, 699
DpnI GATC 6 cut(s) 276, 342, 422, 504, 642, 663
DpnII GATC 6 cut(s) 274, 340, 420, 502, 640, 661
Eam1104I CTCTTC 3 cut(s) 33, 233, 441
EarI CTCTTC 3 cut(s) 33, 233, 441
EciI GGCGGA 2 cut(s) 154, 515
Eco130I CCWWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 3 cut(s) 64, 97, 544
FaiI YATR 6 cut(s) 62, 95, 200, 482, 542, 706
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 3 cut(s) 60, 93, 540
Fnu4HI GCNGC 3 cut(s) 137, 456, 524
Fsp4HI GCNGC 3 cut(s) 137, 456, 524
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 137, 456, 524
HaeIII GGCC 1 cut(s) 414
HapII CCGG 2 cut(s) 117, 440
HgaI GACGC 2 cut(s) 499, 538
HhaI GCGC 1 cut(s) 460
Hin1I GRCGYC 2 cut(s) 537, 549
Hin1II CATG 3 cut(s) 64, 97, 544
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 2 cut(s) 489, 680
HindII GTYRAC 2 cut(s) 489, 680
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 4 cut(s) 260, 383, 450, 676
HpaII CCGG 2 cut(s) 117, 440
HphI GGTGA 2 cut(s) 259, 437
Hpy166II GTNNAC 2 cut(s) 489, 680
Hpy188I TCNGA 3 cut(s) 517, 535, 661
Hpy8I GTNNAC 2 cut(s) 489, 680
Hpy99I CGWCG 3 cut(s) 341, 391, 394
HpyAV CCTTC 2 cut(s) 188, 314
HpyCH4III ACNGT 4 cut(s) 271, 469, 595, 686
HpyCH4IV ACGT 3 cut(s) 336, 485, 537
HpyCH4V TGCA 1 cut(s) 153
HpyF3I CTNAG 3 cut(s) 214, 644, 699
HpySE526I ACGT 3 cut(s) 336, 485, 537
Hsp92I GRCGYC 2 cut(s) 537, 549
Hsp92II CATG 3 cut(s) 64, 97, 544
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 6 cut(s) 274, 340, 420, 502, 640, 661
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 5 cut(s) 63, 130, 453, 531, 567
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 1 cut(s) 375
MaeII ACGT 3 cut(s) 336, 485, 537
MaeIII GTNAC 6 cut(s) 63, 265, 507, 577, 589, 670
MalI GATC 6 cut(s) 276, 342, 422, 504, 642, 663
MboI GATC 6 cut(s) 274, 340, 420, 502, 640, 661
MboII GAAGA 6 cut(s) 50, 81, 220, 428, 621, 624
MluCI AATT 1 cut(s) 403
MlyI GAGTC 1 cut(s) 685
MnlI CCTC 5 cut(s) 34, 309, 326, 404, 444
MseI TTAA 5 cut(s) 561, 573, 600, 609, 615
MspI CCGG 2 cut(s) 117, 440
MvnI CGCG 2 cut(s) 455, 460
NcoI CCATGG 1 cut(s) 93
NdeII GATC 6 cut(s) 274, 340, 420, 502, 640, 661
NlaIII CATG 3 cut(s) 64, 97, 544
NlaIV GGNNCC 2 cut(s) 121, 471
NmuCI GTSAC 2 cut(s) 265, 577
PcsI WCGNNNNNNNCGW 2 cut(s) 392, 632
PfeI GAWTC 3 cut(s) 260, 383, 450
PkrI GCNGC 3 cut(s) 138, 457, 525
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PsiI TTATAA 1 cut(s) 706
Psp1406I AACGTT 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 121, 471
SaqAI TTAA 5 cut(s) 561, 573, 600, 609, 615
SatI GCNGC 3 cut(s) 137, 456, 524
Sau3AI GATC 6 cut(s) 274, 340, 420, 502, 640, 661
SchI GAGTC 1 cut(s) 685
SetI ASST 9 cut(s) 220, 289, 327, 339, 380, 433, 488, 528, 540
SfaNI GCATC 1 cut(s) 375
Sse9I AATT 1 cut(s) 403
SsiI CCGC 8 cut(s) 123, 136, 139, 364, 455, 460, 500, 557
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 4 cut(s) 271, 469, 595, 686
TaiI ACGT 3 cut(s) 339, 488, 540
TaqI TCGA 3 cut(s) 258, 339, 695
TasI AATT 1 cut(s) 403
TauI GCSGC 2 cut(s) 139, 458
TfiI GAWTC 3 cut(s) 260, 383, 450
Tru1I TTAA 5 cut(s) 561, 573, 600, 609, 615
Tru9I TTAA 5 cut(s) 561, 573, 600, 609, 615
TscAI CASTG 2 cut(s) 586, 689
TseFI GTSAC 2 cut(s) 265, 577
TseI GCWGC 1 cut(s) 523
Tsp45I GTSAC 2 cut(s) 265, 577
TspGWI ACGGA 2 cut(s) 253, 280
TspRI CASTG 2 cut(s) 586, 689
ZraI GACGTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.