FvH4_6g09270

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015399
Physical Location & Seq
Forward (+)
5506341 .. 5507397
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09270.t1

Sequence Viewer

Length: 642 bp
ATGACTAGTGAGCTAGAAAGTATCATGAAAGCCAACGGTGACGGCGGCAGTACTTCTGAGCCTCCTCATCGCTCTCGGAAGCGCAGAAACATCTGCCTTGCGGCGACCGCCGCCGTTGTCGTGACCGTTCTCATTCTGGTCATATTCTGTCTGACTGTGTTCAAAGCCAAGGACCCTGAAACGACGGAGAACTCGGTCGTTTTGAGGAACCTGCAAACCGACTTCAACATCAACAGAGCCACCGTCGACGTGAACATCACTCTCGATGTGGACATGACGGTGAAGAACCCTAACAAGTTGGGAATGAAGTACACCAACAGCACCGCGTTATTGAACTACAGGGGTGAGTTGGTGGGCCAGGCTCCAATCGTAGCCGGAGATATTTCCGCCGGTGAGACCAAGTCTATGGATGTTACACTTACCGTTATGGCAGACCGGTTTTTGGGGAAAACATCGGAGCTTTTACAGGATGTAATCGCCGGTAGCATTCCGTTCAACACTGTCACCAAAATTTCCGGCAAAGTCACTATATTGGGTATCTTCAAGGTTCATGTGGTATCCACCTCGTCATGCGATTTCAATGTCCATGTCGGAAGGAACACAGCCGGAGACCAAAAGTGTACGTACAAGACAAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.0

Weight (kDa)

8.88

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 92 - 185 4.1e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54200
fragaria_vesca FvH4_6g09270
malus_domestica MD04G1179500.v1.1 MD12G1194600.v1.1
prunus_persica Prupe.6G299500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459631
rosa_laevigata RLG00000025071
rosa_multiflora Rmu_sc0000240.1_g000017 Rmu_sc0023706.1_g000007
rosa_roxburghii Rroxscaffold_6G00420110
rosa_rugosa Rorug03G0036800.1
rosa_samantha Rh3BG098100 Rh3CG100100 Rh3DG099500
rosa_wichuraiana Rw0G013810 Rw0G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 326
AciI CCGC 6 cut(s) 45, 101, 108, 111, 324, 387
AcsI RAATTY 1 cut(s) 510
AfaI GTAC 4 cut(s) 52, 311, 622, 626
AfiI CCNNNNNNNGG 1 cut(s) 442
AgeI ACCGGT 1 cut(s) 435
AgsI TTSAA 6 cut(s) 163, 226, 334, 496, 544, 580
AhlI ACTAGT 1 cut(s) 5
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 2 cut(s) 13, 460
AluI AGCT 2 cut(s) 13, 460
Alw26I GTCTC 2 cut(s) 389, 603
AoxI GGCC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 510
AsiGI ACCGGT 1 cut(s) 435
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 172, 355
AsuHPI GGTGA 5 cut(s) 50, 292, 356, 404, 496
AvaII GGWCC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 58, 98
BciT130I CCWGG 1 cut(s) 359
BciVI GTATCC 1 cut(s) 568
BcoDI GTCTC 2 cut(s) 389, 603
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 14
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 219
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 3 cut(s) 46, 102, 111
BlsI GCNGC 3 cut(s) 47, 103, 112
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 172, 355
BmiI GGNNCC 3 cut(s) 174, 209, 363
BmrFI CCNGG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 624
BsaI GGTCTC 2 cut(s) 389, 603
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 435
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse118I RCCGGY 3 cut(s) 389, 435, 479
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 415, 475
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 326
Bsh1285I CGRYCG 2 cut(s) 108, 198
BshFI GGCC 1 cut(s) 357
BshTI ACCGGT 1 cut(s) 435
BsiEI CGRYCG 2 cut(s) 108, 198
BsiSI CCGG 6 cut(s) 375, 390, 436, 480, 516, 606
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 389, 603
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 1 cut(s) 357
Bso31I GGTCTC 2 cut(s) 389, 603
BspACI CCGC 6 cut(s) 45, 101, 108, 111, 324, 387
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 326
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 174, 209, 363
BspMI ACCTGC 1 cut(s) 219
BspTNI GGTCTC 2 cut(s) 389, 603
BsrFI RCCGGY 3 cut(s) 389, 435, 479
BssAI RCCGGY 3 cut(s) 389, 435, 479
BssECI CCNNGG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 7 cut(s) 38, 127, 157, 244, 280, 424, 502
BstBAI YACGTR 1 cut(s) 624
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 415, 475
BstFNI CGCG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 389, 603
BstMCI CGRYCG 2 cut(s) 108, 198
BstMWI GCNNNNNNNGC 2 cut(s) 107, 110
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 337
BstSNI TACGTA 1 cut(s) 624
BstUI CGCG 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 406
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 415, 475
BtsIMutI CAGTG 1 cut(s) 498
BveI ACCTGC 1 cut(s) 219
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 3 cut(s) 389, 435, 479
Cfr13I GGNCC 2 cut(s) 172, 355
Csp6I GTAC 4 cut(s) 51, 310, 621, 625
CspAI ACCGGT 1 cut(s) 435
CviAII CATG 5 cut(s) 25, 274, 551, 570, 587
CviQI GTAC 4 cut(s) 51, 310, 621, 625
DdeI CTNAG 1 cut(s) 57
EciI GGCGGA 1 cut(s) 376
Eco105I TACGTA 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 389, 603
Eco47I GGWCC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 5 cut(s) 28, 277, 554, 573, 590
FaiI YATR 9 cut(s) 26, 143, 275, 407, 428, 530, 552, 571, 588
FatI CATG 5 cut(s) 24, 273, 550, 569, 586
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 46, 102, 111
FokI GGATG 2 cut(s) 422, 482
Fsp4HI GCNGC 3 cut(s) 46, 102, 111
FspBI CTAG 2 cut(s) 6, 14
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 46, 102, 111
HaeIII GGCC 1 cut(s) 357
HapII CCGG 6 cut(s) 375, 390, 436, 480, 516, 606
HhaI GCGC 1 cut(s) 84
Hin1II CATG 5 cut(s) 28, 277, 554, 573, 590
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaII CCGG 6 cut(s) 375, 390, 436, 480, 516, 606
HphI GGTGA 5 cut(s) 50, 292, 356, 404, 496
Hpy166II GTNNAC 5 cut(s) 247, 253, 271, 312, 621
Hpy188I TCNGA 5 cut(s) 58, 78, 153, 457, 593
Hpy188III TCNNGA 3 cut(s) 25, 121, 263
Hpy8I GTNNAC 5 cut(s) 247, 253, 271, 312, 621
Hpy99I CGWCG 3 cut(s) 187, 248, 251
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 7 cut(s) 38, 127, 157, 244, 280, 424, 502
HpyCH4IV ACGT 2 cut(s) 249, 623
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 110
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 249, 623
Hsp92II CATG 5 cut(s) 28, 277, 554, 573, 590
HspAI GCGC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 367, 457
MaeI CTAG 2 cut(s) 6, 14
MaeII ACGT 2 cut(s) 249, 623
MaeIII GTNAC 5 cut(s) 38, 121, 412, 502, 523
MboII GAAGA 2 cut(s) 295, 532
MluCI AATT 2 cut(s) 510, 635
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 4 cut(s) 72, 75, 198, 574
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 6 cut(s) 375, 390, 436, 480, 516, 606
MspR9I CCNGG 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 107, 110
NlaIII CATG 5 cut(s) 28, 277, 554, 573, 590
NlaIV GGNNCC 3 cut(s) 174, 209, 363
NmuCI GTSAC 4 cut(s) 38, 121, 502, 523
PagI TCATGA 1 cut(s) 24
PctI GAATGC 1 cut(s) 486
PflFI GACNNNGTC 1 cut(s) 400
PinAI ACCGGT 1 cut(s) 435
PkrI GCNGC 3 cut(s) 47, 103, 112
Ppu21I YACGTR 1 cut(s) 624
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 3 cut(s) 174, 209, 363
PspPI GGNCC 2 cut(s) 172, 355
PspPPI RGGWCCY 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 400
RsaI GTAC 4 cut(s) 52, 311, 622, 626
RsaNI GTAC 4 cut(s) 51, 310, 621, 625
RseI CAYNNNNRTG 1 cut(s) 278
SalI GTCGAC 1 cut(s) 245
SatI GCNGC 3 cut(s) 46, 102, 111
Sau96I GGNCC 2 cut(s) 172, 355
ScaI AGTACT 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 359
SetI ASST 7 cut(s) 15, 213, 252, 462, 549, 566, 626
SfcI CTRYAG 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 389
SgrDI CGTCGACG 1 cut(s) 245
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 278
SnaBI TACGTA 1 cut(s) 624
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 2 cut(s) 510, 635
SsiI CCGC 6 cut(s) 45, 101, 108, 111, 324, 387
SspMI CTAG 2 cut(s) 6, 14
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 7 cut(s) 38, 127, 157, 244, 280, 424, 502
TaiI ACGT 2 cut(s) 252, 626
TaqI TCGA 2 cut(s) 246, 264
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 510, 635
TatI WGTACW 2 cut(s) 50, 309
TauI GCSGC 3 cut(s) 48, 104, 113
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 4 cut(s) 38, 121, 502, 523
Tsp45I GTSAC 4 cut(s) 38, 121, 502, 523
TspDTI ATGAA 3 cut(s) 41, 320, 539
TspGWI ACGGA 2 cut(s) 200, 480
TspRI CASTG 1 cut(s) 505
Tth111I GACNNNGTC 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 6, 14
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.