MD12G1194600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015399
Physical Location & Seq
Reverse (-)
27590175 .. 27590780
606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1194600.v1.1.491

Sequence Viewer

Length: 606 bp
ATGAAAGCCGCGTACGGCGGAGATGCCTCCCCACGCCGCCGGACGTGCAGAAACGTCTGCCTGGCGGCGACAGCTGCCGTCTTCGTCGCAACGATCGTACTCGTGATCCTCTGCCTGACGGTGTTCAAGGCAAAGAATCCCACGACGACGGTCAACTCCGCCGTTCTGAAGGACCTCGACGTGTCACTCAACATTCCACGTGTCAGCGTGGACATGAACTTGACCCTGGGCGTGGATCTATCCGTGAAAAATCCGAATAAAGTCGGGTTCAAGTACAAAAACAGCACCGCTTCTTTGAACTACAGGGGGACCCAGGTAGGCGAGGCCCAAATCGGGTCGGGCAAGATATCCGCGGACCAGACGAAGCCCATGAACGTGACGCTGACCATCATGGCGGATCGGCTGCTGGGGAAATCATCGGAGCTCTTTTCGGACGTGCGGGCCGGAACGCTGCCGTTGAATACTTTTACCAAAATCTCCGGGAAGGTCATCGTTTTGGGGATCTTTAAGATTCATGTCGTTTCGACCTCCTCCTGCGACTTCAGTATCGATGTCGGTAACCGCACTGTTGGACAGCAACGCTGCACACACAAGACGAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

202

Amino Acids

21.51

Weight (kDa)

9.91

Isoelectric Point (pI)

17.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 80 - 175 1.7e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54200
fragaria_vesca FvH4_6g09270
malus_domestica MD04G1179500.v1.1 MD12G1194600.v1.1
prunus_persica Prupe.6G299500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459631
rosa_laevigata RLG00000025071
rosa_multiflora Rmu_sc0000240.1_g000017 Rmu_sc0023706.1_g000007
rosa_roxburghii Rroxscaffold_6G00420110
rosa_rugosa Rorug03G0036800.1
rosa_samantha Rh3BG098100 Rh3CG100100 Rh3DG099500
rosa_wichuraiana Rw0G013810 Rw0G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 11, 353
AclWI GGATC 4 cut(s) 100, 243, 405, 509
AcuI CTGAAG 2 cut(s) 188, 526
AcvI CACGTG 1 cut(s) 200
AfaI GTAC 3 cut(s) 14, 99, 275
AfiI CCNNNNNNNGG 2 cut(s) 232, 333
AflIII ACRYGT 2 cut(s) 180, 199
AgsI TTSAA 4 cut(s) 127, 271, 298, 460
AjiI CACGTC 3 cut(s) 45, 181, 436
AjnI CCWGG 3 cut(s) 60, 225, 312
AluBI AGCT 2 cut(s) 74, 424
AluI AGCT 2 cut(s) 74, 424
Alw21I GWGCWC 1 cut(s) 426
AlwI GGATC 4 cut(s) 100, 243, 405, 509
AoxI GGCC 2 cut(s) 324, 441
ApeKI GCWGC 4 cut(s) 74, 403, 451, 582
AspS9I GGNCC 5 cut(s) 172, 309, 325, 355, 441
AsuC2I CCSGG 1 cut(s) 481
AvaII GGWCC 3 cut(s) 172, 309, 355
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 61, 390, 438, 569
BccI CCATC 1 cut(s) 395
BceAI ACGGC 4 cut(s) 31, 62, 146, 439
BciT130I CCWGG 3 cut(s) 62, 227, 314
BcnI CCSGG 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 7 cut(s) 9, 37, 66, 75, 404, 452, 583
BlsI GCNGC 7 cut(s) 10, 38, 67, 76, 405, 453, 584
Bme1390I CCNGG 4 cut(s) 62, 227, 314, 481
Bme18I GGWCC 3 cut(s) 172, 309, 355
BmgBI CACGTC 3 cut(s) 45, 181, 436
BmgT120I GGNCC 5 cut(s) 172, 309, 325, 355, 441
BmiI GGNNCC 2 cut(s) 310, 311
BmrFI CCNGG 4 cut(s) 62, 227, 314, 481
BmsI GCATC 1 cut(s) 13
BoxI GACNNNNGTC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 549
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 4 cut(s) 225, 226, 312, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 333
BseBI CCWGG 3 cut(s) 62, 227, 314
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 4 cut(s) 225, 226, 312, 351
BseLI CCNNNNNNNGG 2 cut(s) 232, 333
BseRI GAGGAG 1 cut(s) 520
BseXI GCAGC 4 cut(s) 61, 390, 438, 569
BseYI CCCAGC 1 cut(s) 406
BsgI GTGCAG 2 cut(s) 67, 568
Bsh1236I CGCG 2 cut(s) 11, 353
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 326, 443
BshVI ATCGAT 1 cut(s) 549
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 3 cut(s) 40, 444, 480
BsiWI CGTACG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 232, 333
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 326, 443
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 5 cut(s) 93, 105, 235, 397, 501
BspANI GGCC 2 cut(s) 326, 443
BspDI ATCGAT 1 cut(s) 549
BspFNI CGCG 2 cut(s) 11, 353
BspLI GGNNCC 2 cut(s) 310, 311
BspPI GGATC 4 cut(s) 100, 243, 405, 509
BssECI CCNNGG 4 cut(s) 225, 226, 312, 351
BssMI GATC 5 cut(s) 93, 105, 235, 397, 501
BssSI CACGAG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 3 cut(s) 62, 227, 314
Bst4CI ACNGT 3 cut(s) 121, 151, 568
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 441
BstDSI CCRYGG 1 cut(s) 351
BstEII GGTNACC 1 cut(s) 557
BstFNI CGCG 2 cut(s) 11, 353
BstKTI GATC 5 cut(s) 96, 108, 238, 400, 504
BstMBI GATC 5 cut(s) 93, 105, 235, 397, 501
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 45, 71, 74
BstNI CCWGG 3 cut(s) 62, 227, 314
BstPAI GACNNNNGTC 1 cut(s) 149
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 4 cut(s) 60, 225, 312, 479
BstSFI CTRYAG 1 cut(s) 301
BstUI CGCG 2 cut(s) 11, 353
BstV1I GCAGC 4 cut(s) 61, 390, 438, 569
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 235, 501
BstYI RGATCY 2 cut(s) 235, 501
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 2 cut(s) 326, 443
BsuTUI ATCGAT 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 3 cut(s) 45, 181, 436
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 441
Cfr13I GGNCC 5 cut(s) 172, 309, 325, 355, 441
Cfr42I CCGCGG 1 cut(s) 354
ClaI ATCGAT 1 cut(s) 549
CseI GACGC 1 cut(s) 388
Csp6I GTAC 3 cut(s) 13, 98, 274
CviAII CATG 4 cut(s) 214, 370, 391, 515
CviJI RGCY 7 cut(s) 8, 74, 326, 367, 403, 424, 443
CviKI_1 RGCY 7 cut(s) 8, 74, 326, 367, 403, 424, 443
CviQI GTAC 3 cut(s) 13, 98, 274
DpnI GATC 5 cut(s) 95, 107, 237, 399, 503
DpnII GATC 5 cut(s) 93, 105, 235, 397, 501
EciI GGCGGA 3 cut(s) 33, 148, 410
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco32I GATATC 1 cut(s) 348
Eco47I GGWCC 3 cut(s) 172, 309, 355
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 2 cut(s) 188, 526
Eco72I CACGTG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 424
EcoO109I RGGNCCY 2 cut(s) 172, 309
EcoO65I GGTNACC 1 cut(s) 557
EcoRII CCWGG 3 cut(s) 60, 225, 312
EcoRV GATATC 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 4 cut(s) 217, 373, 394, 518
FaiI YATR 5 cut(s) 215, 371, 392, 516, 604
FaqI GGGAC 1 cut(s) 322
FatI CATG 4 cut(s) 213, 369, 390, 514
FauI CCCGC 1 cut(s) 432
Fnu4HI GCNGC 7 cut(s) 9, 37, 66, 75, 404, 452, 583
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 7 cut(s) 9, 37, 66, 75, 404, 452, 583
GluI GCNGC 7 cut(s) 9, 37, 66, 75, 404, 452, 583
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 2 cut(s) 326, 443
HapII CCGG 3 cut(s) 40, 444, 480
HgaI GACGC 1 cut(s) 388
Hin1II CATG 4 cut(s) 217, 373, 394, 518
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 136, 511
HpaII CCGG 3 cut(s) 40, 444, 480
Hpy166II GTNNAC 2 cut(s) 154, 211
Hpy188I TCNGA 4 cut(s) 168, 255, 421, 433
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 154, 211
Hpy99I CGWCG 4 cut(s) 89, 148, 151, 182
HpyAV CCTTC 2 cut(s) 163, 478
HpyCH4III ACNGT 3 cut(s) 121, 151, 568
HpyCH4IV ACGT 6 cut(s) 44, 54, 180, 199, 375, 435
HpyCH4V TGCA 2 cut(s) 48, 585
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 71, 74
HpySE526I ACGT 6 cut(s) 44, 54, 180, 199, 375, 435
Hsp92II CATG 4 cut(s) 217, 373, 394, 518
KflI GGGWCCC 1 cut(s) 309
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 5 cut(s) 93, 105, 235, 397, 501
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 4 cut(s) 61, 390, 438, 569
LweI GCATC 1 cut(s) 13
MaeII ACGT 6 cut(s) 44, 54, 180, 199, 375, 435
MaeIII GTNAC 3 cut(s) 183, 376, 557
MalI GATC 5 cut(s) 95, 107, 237, 399, 503
MboI GATC 5 cut(s) 93, 105, 235, 397, 501
MboII GAAGA 1 cut(s) 73
MflI RGATCY 2 cut(s) 235, 501
MhlI GDGCHC 1 cut(s) 426
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 6 cut(s) 37, 119, 185, 316, 538, 541
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 74, 353
MspI CCGG 3 cut(s) 40, 444, 480
MspR9I CCNGG 4 cut(s) 62, 227, 314, 481
MvaI CCWGG 3 cut(s) 62, 227, 314
MvnI CGCG 2 cut(s) 11, 353
MwoI GCNNNNNNNGC 3 cut(s) 45, 71, 74
NciI CCSGG 1 cut(s) 481
NdeII GATC 5 cut(s) 93, 105, 235, 397, 501
NlaIII CATG 4 cut(s) 217, 373, 394, 518
NlaIV GGNNCC 2 cut(s) 310, 311
NmuCI GTSAC 2 cut(s) 183, 376
PasI CCCWGGG 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 2 cut(s) 136, 511
Pfl23II CGTACG 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 7 cut(s) 10, 38, 67, 76, 405, 453, 584
Ple19I CGATCG 1 cut(s) 96
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 200
PpuMI RGGWCCY 2 cut(s) 172, 309
PshAI GACNNNNGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 426
Psp5II RGGWCCY 2 cut(s) 172, 309
Psp6I CCWGG 3 cut(s) 60, 225, 312
PspCI CACGTG 1 cut(s) 200
PspEI GGTNACC 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 3 cut(s) 60, 225, 312
PspLI CGTACG 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 310, 311
PspPI GGNCC 5 cut(s) 172, 309, 325, 355, 441
PspPPI RGGWCCY 2 cut(s) 172, 309
PsuI RGATCY 2 cut(s) 235, 501
PvuI CGATCG 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 3 cut(s) 14, 99, 275
RsaNI GTAC 3 cut(s) 13, 98, 274
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 426
SacII CCGCGG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 7 cut(s) 9, 37, 66, 75, 404, 452, 583
Sau3AI GATC 5 cut(s) 93, 105, 235, 397, 501
Sau96I GGNCC 5 cut(s) 172, 309, 325, 355, 441
ScrFI CCNGG 4 cut(s) 62, 227, 314, 481
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 301
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SinI GGWCC 3 cut(s) 172, 309, 355
SmiMI CAYNNNNRTG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 4 cut(s) 60, 225, 312, 479
TaaI ACNGT 3 cut(s) 121, 151, 568
TaiI ACGT 6 cut(s) 47, 57, 183, 202, 378, 438
TaqI TCGA 3 cut(s) 177, 524, 549
TatI WGTACW 1 cut(s) 273
TauI GCSGC 3 cut(s) 11, 39, 68
TfiI GAWTC 2 cut(s) 136, 511
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 2 cut(s) 183, 376
TseI GCWGC 4 cut(s) 74, 403, 451, 582
Tsp45I GTSAC 2 cut(s) 183, 376
TspDTI ATGAA 4 cut(s) 17, 230, 386, 503
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 172, 309, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.