Rh3BG098100

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015399
Physical Location & Seq
Forward (+)
7836420 .. 7837186
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG098100.1

Sequence Viewer

Length: 594 bp
ATGAAAGCCTATGAGACTGTTGACGGTTCTGAGCCTCCTCGCTCTCGGAAGTGCAGAAACATCTGCCTTGCGGTGACCGCCGGCACTGTCGTGATCGTTCTCATTCTGGTCGTACTCTGTTTGACGGTGTTCAAAGCAAAGGACCCGGAAATAACGGTGAACTCAGTCGTTTTGAGGAACTTGCAAGCGGACTTTAACGTCAACAAATTCAGCGTCGACGTGAATATCACTCTCGACGTGCACTTGACGTTGAAGAATCCGAACAAGGTGGGAGTCAAGTACACCAACAGCACCGCGTCGTTGAACTACAGGGGTGAGCTGGTGGGCCAGGTCCCAATCGGAGCCGGAAAGATTTCCGCGGATCAGACCAAGCCCTTGGATATTACCCTCACCGTTATGGGCGACCGGTTCCTCGGAAAAACACAAGAGCTTTTACCTGATGTGGTCGCCGGTACGATTCCGCTCGACACTGTAGCCAAAATCTCCGGCAAAGTCTCTATCTTGGGTATCTTTAAGGTTCATGTGGTCTCGACCACCTCATGCGATATCAATGTCTATGTCAGAAACAACACCATCGGAAAAACATTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

197

Amino Acids

21.18

Weight (kDa)

9.19

Isoelectric Point (pI)

19.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 81 - 175 8.7e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54200
fragaria_vesca FvH4_6g09270
malus_domestica MD04G1179500.v1.1 MD12G1194600.v1.1
prunus_persica Prupe.6G299500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459631
rosa_laevigata RLG00000025071
rosa_multiflora Rmu_sc0000240.1_g000017 Rmu_sc0023706.1_g000007
rosa_roxburghii Rroxscaffold_6G00420110
rosa_rugosa Rorug03G0036800.1
rosa_samantha Rh3BG098100 Rh3CG100100 Rh3DG099500
rosa_wichuraiana Rw0G013810 Rw0G017610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 296, 359
AciI CCGC 7 cut(s) 71, 78, 188, 294, 357, 359, 461
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 3 cut(s) 114, 281, 454
AgeI ACCGGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 133, 253, 304
AjiI CACGTC 2 cut(s) 220, 238
AjnI CCWGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 319, 430
AluI AGCT 2 cut(s) 319, 430
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 8, 499, 532
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 369
AoxI GGCC 1 cut(s) 325
ApaLI GTGCAC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AsiGI ACCGGT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 142, 325, 331
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 85, 169, 326, 382
AvaII GGWCC 2 cut(s) 142, 331
BaeGI GKGCMC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 8, 499, 532
BfmI CTRYAG 2 cut(s) 307, 471
Bme1390I CCNGG 2 cut(s) 146, 329
Bme18I GGWCC 2 cut(s) 142, 331
BmgBI CACGTC 2 cut(s) 220, 238
BmgT120I GGNCC 3 cut(s) 142, 325, 331
BmiI GGNNCC 4 cut(s) 144, 333, 343, 410
BmrFI CCNGG 2 cut(s) 146, 329
BpuMI CCSGG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 357, 375, 412
BsaWI WCCGGW 1 cut(s) 405
Bse118I RCCGGY 3 cut(s) 80, 405, 449
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 357, 375, 412
BseMII CTCAG 2 cut(s) 21, 177
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 296, 359
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 1 cut(s) 327
BshTI ACCGGT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 3 cut(s) 8, 499, 532
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 93, 361
BspACI CCGC 7 cut(s) 71, 78, 188, 294, 357, 359, 461
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 22, 176
BspFNI CGCG 2 cut(s) 296, 359
BspLI GGNNCC 4 cut(s) 144, 333, 343, 410
BspPI GGATC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 532
BsrBI CCGCTC 1 cut(s) 463
BsrFI RCCGGY 3 cut(s) 80, 405, 449
BssAI RCCGGY 3 cut(s) 80, 405, 449
BssECI CCNNGG 3 cut(s) 357, 375, 412
BssMI GATC 2 cut(s) 93, 361
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 7 cut(s) 19, 26, 88, 127, 157, 394, 472
BstC8I GCNNGC 2 cut(s) 82, 186
BstDEI CTNAG 2 cut(s) 30, 163
BstDSI CCRYGG 1 cut(s) 357
BstEII GGTNACC 1 cut(s) 73
BstFNI CGCG 2 cut(s) 296, 359
BstKTI GATC 2 cut(s) 96, 364
BstMAI GTCTC 3 cut(s) 8, 499, 532
BstMBI GATC 2 cut(s) 93, 361
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 329
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 144, 327
BstSFI CTRYAG 2 cut(s) 307, 471
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 2 cut(s) 296, 359
BstXI CCANNNNNNTGG 1 cut(s) 376
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 357
BtrI CACGTC 2 cut(s) 220, 238
BtsIMutI CAGTG 2 cut(s) 84, 468
Cac8I GCNNGC 2 cut(s) 82, 186
Cfr10I RCCGGY 3 cut(s) 80, 405, 449
Cfr13I GGNCC 3 cut(s) 142, 325, 331
Cfr42I CCGCGG 1 cut(s) 360
CseI GACGC 2 cut(s) 202, 285
Csp6I GTAC 3 cut(s) 113, 280, 453
CspAI ACCGGT 1 cut(s) 405
CviAII CATG 2 cut(s) 521, 540
CviJI RGCY 8 cut(s) 8, 34, 319, 327, 344, 373, 430, 476
CviKI_1 RGCY 8 cut(s) 8, 34, 319, 327, 344, 373, 430, 476
CviQI GTAC 3 cut(s) 113, 280, 453
DdeI CTNAG 2 cut(s) 30, 163
DpnI GATC 2 cut(s) 95, 363
DpnII GATC 2 cut(s) 93, 361
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 142, 331
Eco91I GGTNACC 1 cut(s) 73
EcoO109I RGGNCCY 2 cut(s) 142, 331
EcoO65I GGTNACC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 327
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 2 cut(s) 524, 543
FaiI YATR 6 cut(s) 12, 398, 522, 541, 558, 592
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 520, 539
FblI GTMKAC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 327
HapII CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
HgaI GACGC 2 cut(s) 202, 285
Hin1II CATG 2 cut(s) 524, 543
HincII GTYRAC 3 cut(s) 22, 202, 217
HindII GTYRAC 3 cut(s) 22, 202, 217
HinfI GANTC 3 cut(s) 256, 273, 457
HpaII CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
HphI GGTGA 4 cut(s) 85, 169, 326, 382
Hpy166II GTNNAC 6 cut(s) 22, 160, 202, 217, 241, 282
Hpy188I TCNGA 8 cut(s) 31, 48, 261, 341, 366, 416, 563, 578
Hpy188III TCNNGA 3 cut(s) 91, 233, 529
Hpy8I GTNNAC 6 cut(s) 22, 160, 202, 217, 241, 282
Hpy99I CGWCG 4 cut(s) 218, 221, 239, 301
HpyCH4III ACNGT 7 cut(s) 19, 26, 88, 127, 157, 394, 472
HpyCH4IV ACGT 4 cut(s) 198, 219, 237, 248
HpyCH4V TGCA 3 cut(s) 54, 184, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 30, 163
HpySE526I ACGT 4 cut(s) 198, 219, 237, 248
Hsp92II CATG 2 cut(s) 524, 543
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 2 cut(s) 93, 361
LmnI GCTCC 1 cut(s) 341
MaeII ACGT 4 cut(s) 198, 219, 237, 248
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 95, 363
MbiI CCGCTC 1 cut(s) 463
MboI GATC 2 cut(s) 93, 361
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 206
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 6 cut(s) 45, 48, 168, 398, 422, 547
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 2 cut(s) 195, 513
MslI CAYNNNNRTG 2 cut(s) 89, 395
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 6 cut(s) 81, 146, 345, 406, 450, 486
MspR9I CCNGG 2 cut(s) 146, 329
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 2 cut(s) 296, 359
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 146
NdeII GATC 2 cut(s) 93, 361
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 524, 543
NlaIV GGNNCC 4 cut(s) 144, 333, 343, 410
NmuCI GTSAC 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 256, 457
PinAI ACCGGT 1 cut(s) 405
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PpuMI RGGWCCY 2 cut(s) 142, 331
Psp5II RGGWCCY 2 cut(s) 142, 331
Psp6I CCWGG 1 cut(s) 327
PspEI GGTNACC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 4 cut(s) 144, 333, 343, 410
PspPI GGNCC 3 cut(s) 142, 325, 331
PspPPI RGGWCCY 2 cut(s) 142, 331
RsaI GTAC 3 cut(s) 114, 281, 454
RsaNI GTAC 3 cut(s) 113, 280, 453
RseI CAYNNNNRTG 2 cut(s) 89, 395
SacII CCGCGG 1 cut(s) 360
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 195, 513
Sau3AI GATC 2 cut(s) 93, 361
Sau96I GGNCC 3 cut(s) 142, 325, 331
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 2 cut(s) 146, 329
SduI GDGCHC 1 cut(s) 243
SfcI CTRYAG 2 cut(s) 307, 471
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SgrDI CGTCGACG 1 cut(s) 215
SinI GGWCC 2 cut(s) 142, 331
SmiMI CAYNNNNRTG 2 cut(s) 89, 395
Sse9I AATT 1 cut(s) 206
SsiI CCGC 7 cut(s) 71, 78, 188, 294, 357, 359, 461
StyD4I CCNGG 2 cut(s) 144, 327
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 7 cut(s) 19, 26, 88, 127, 157, 394, 472
TaiI ACGT 4 cut(s) 201, 222, 240, 251
TaqI TCGA 4 cut(s) 216, 234, 465, 530
TasI AATT 1 cut(s) 206
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 2 cut(s) 256, 457
Tru1I TTAA 2 cut(s) 195, 513
Tru9I TTAA 2 cut(s) 195, 513
TscAI CASTG 2 cut(s) 91, 475
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 17, 509
TspRI CASTG 2 cut(s) 91, 475
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 142, 331
XapI RAATTY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.